Wall clock time and date at job start Tue Mar 31 2020 00:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00016 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00033 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99692 * 180.02562 * 11 10 9 14 14 N 1.46902 * 109.46840 * 180.02562 * 13 11 10 15 15 C 1.48529 * 111.00088 * 52.60469 * 14 13 11 16 16 C 1.54939 * 103.22861 * 159.72003 * 15 14 13 17 17 C 1.54595 * 102.92156 * 322.58445 * 16 15 14 18 18 H 1.08997 * 110.30961 * 263.04032 * 17 16 15 19 19 C 1.50695 * 110.30908 * 140.87055 * 17 16 15 20 20 C 1.34515 * 125.78685 * 123.99853 * 19 17 16 21 21 C 1.41384 * 106.83955 * 179.89076 * 20 19 17 22 22 C 1.34513 * 106.84178 * 0.37482 * 21 20 19 23 23 O 1.34298 * 125.79554 * 304.31159 * 19 17 16 24 24 C 1.47901 * 110.99854 * 169.99840 * 14 13 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 0.97001 * 120.00220 * 0.02562 * 10 9 7 29 29 H 1.09002 * 109.47066 * 299.99726 * 13 11 10 30 30 H 1.09000 * 109.47577 * 60.00236 * 13 11 10 31 31 H 1.09001 * 110.66427 * 278.15271 * 15 14 13 32 32 H 1.08997 * 110.66939 * 41.28457 * 15 14 13 33 33 H 1.08998 * 110.72382 * 204.22572 * 16 15 14 34 34 H 1.09002 * 110.72533 * 80.94242 * 16 15 14 35 35 H 1.08005 * 126.58123 * 0.02782 * 20 19 17 36 36 H 1.08003 * 126.57700 * 180.11879 * 21 20 19 37 37 H 1.07997 * 125.78958 * 179.75439 * 22 21 20 38 38 H 1.09000 * 109.91868 * 333.50907 * 24 14 13 39 39 H 1.08998 * 109.91877 * 94.60753 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 0.0006 14 7 1.9985 -7.3010 0.0005 15 6 1.0035 -7.3411 -1.1016 16 6 0.7319 -8.8561 -1.2791 17 6 2.1249 -9.4862 -1.0504 18 1 2.6172 -9.6726 -2.0048 19 6 1.9973 -10.7675 -0.2674 20 6 2.4531 -11.9731 -0.6522 21 6 2.1223 -12.8837 0.3776 22 6 1.4767 -12.1817 1.3261 23 8 1.4040 -10.9005 0.9300 24 6 2.9112 -8.4400 -0.2388 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 3.1567 -3.4355 -0.0002 29 1 3.3597 -5.9715 -0.8894 30 1 3.3596 -5.9708 0.8906 31 1 0.0912 -6.8176 -0.8154 32 1 1.4223 -6.9159 -2.0137 33 1 0.3732 -9.0682 -2.2863 34 1 0.0209 -9.2106 -0.5328 35 1 2.9740 -12.2013 -1.5703 36 1 2.3418 -13.9410 0.3967 37 1 1.0835 -12.5807 2.2494 38 1 3.7803 -8.1066 -0.8059 39 1 3.2300 -8.8665 0.7123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732206164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:46 Heat of formation + Delta-G solvation = -13.407537 kcal Electronic energy + Delta-G solvation = -20956.034613 eV Core-core repulsion = 17672.408966 eV Total energy + Delta-G solvation = -3283.625647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.71845 -39.58997 -37.88514 -34.21872 -33.33509 -32.76118 -32.31357 -29.95796 -28.33508 -27.50004 -25.70949 -22.62115 -22.10549 -21.73475 -21.17174 -20.02853 -19.67481 -17.52701 -17.15531 -16.13511 -15.97465 -15.86001 -15.32652 -14.92751 -14.90124 -14.15949 -13.98333 -13.70350 -13.29946 -12.95060 -12.86510 -12.68733 -12.25087 -12.18332 -11.94978 -11.84329 -11.70274 -11.27153 -11.06938 -10.99305 -10.89535 -10.70099 -10.29304 -10.05481 -9.40135 -8.94980 -8.73935 -8.55131 -8.29355 -7.86526 -6.17207 -4.24138 1.60659 2.45762 2.86500 3.23783 3.29812 3.32073 3.36271 3.77905 4.23412 4.34437 4.40734 4.59919 4.66473 4.84113 4.92716 5.11768 5.18871 5.28009 5.29375 5.41598 5.50114 5.55993 5.61805 5.64112 5.76279 5.79216 5.86179 5.98790 6.13517 6.33474 6.42092 6.94881 6.97928 7.05417 7.31812 7.45504 7.51730 7.66824 7.96688 8.62283 8.78092 9.11129 9.42581 10.92990 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.057376 B = 0.002731 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.894122 B =10248.744854 C =10346.530752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.273 1.273 6 H -0.284 1.284 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.713 5.713 11 C 0.498 3.502 12 O -0.541 6.541 13 C 0.025 3.975 14 N -0.496 5.496 15 C 0.033 3.967 16 C -0.119 4.119 17 C -0.022 4.022 18 H 0.104 0.896 19 C 0.011 3.989 20 C -0.219 4.219 21 C -0.217 4.217 22 C -0.045 4.045 23 O -0.164 6.164 24 C 0.041 3.959 25 H 0.266 0.734 26 H 0.027 0.973 27 H 0.026 0.974 28 H 0.390 0.610 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.200 0.800 38 H 0.051 0.949 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.175 -22.505 -1.850 23.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.362 5.362 11 C 0.282 3.718 12 O -0.420 6.420 13 C -0.106 4.106 14 N -0.221 5.221 15 C -0.094 4.094 16 C -0.157 4.157 17 C -0.041 4.041 18 H 0.122 0.878 19 C -0.040 4.040 20 C -0.238 4.238 21 C -0.236 4.236 22 C -0.113 4.113 23 O -0.059 6.059 24 C -0.087 4.087 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.217 0.783 38 H 0.069 0.931 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.755 -22.287 -1.183 23.048 hybrid contribution 1.540 0.784 -0.775 1.894 sum 7.295 -21.503 -1.958 22.791 Atomic orbital electron populations 1.69977 1.06105 1.27305 1.48877 1.24959 0.94920 0.99462 0.94709 0.86414 0.79595 0.82646 0.78239 1.20439 1.19774 1.21004 1.21228 0.93254 0.90481 1.53224 0.91923 1.19091 0.88268 0.81879 0.97719 1.46444 1.11115 1.06058 1.72580 1.20259 0.89496 0.84207 0.77795 1.90587 1.16781 1.84291 1.50303 1.22285 0.95961 0.89709 1.02671 1.64673 1.12427 1.00581 1.44405 1.23557 0.99026 0.95075 0.91748 1.22672 0.95258 0.95568 1.02245 1.20690 0.98434 0.88610 0.96336 0.87783 1.22208 0.99215 0.96761 0.85808 1.21577 1.07874 0.92324 1.02046 1.21795 1.05269 1.00926 0.95620 1.24048 1.04611 0.81235 1.01367 1.84082 1.61188 1.28975 1.31668 1.22996 0.94504 0.91319 0.99870 0.92438 0.95504 0.95588 0.77769 0.92254 0.88167 0.86236 0.94166 0.90600 0.90142 0.83717 0.83697 0.78285 0.93083 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.25 6.63 5.43 -5.20 -0.03 6.60 16 10 N -0.71 -14.86 5.55 -61.47 -0.34 -15.20 16 11 C 0.50 9.84 7.54 -10.98 -0.08 9.75 16 12 O -0.54 -12.69 13.52 5.56 0.08 -12.62 16 13 C 0.03 0.37 5.52 -4.98 -0.03 0.34 16 14 N -0.50 -7.31 5.26 -231.89 -1.22 -8.53 16 15 C 0.03 0.48 5.30 -1.90 -0.01 0.47 16 16 C -0.12 -1.41 6.60 -24.87 -0.16 -1.57 16 17 C -0.02 -0.23 3.44 -90.42 -0.31 -0.54 16 18 H 0.10 0.86 8.12 -51.93 -0.42 0.44 16 19 C 0.01 0.12 5.57 -35.63 -0.20 -0.08 16 20 C -0.22 -2.18 10.80 -39.70 -0.43 -2.61 16 21 C -0.22 -1.99 10.91 -39.70 -0.43 -2.43 16 22 C -0.04 -0.42 12.09 29.42 0.36 -0.07 16 23 O -0.16 -2.02 10.49 5.73 0.06 -1.96 16 24 C 0.04 0.47 6.34 -2.75 -0.02 0.46 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.03 0.79 8.14 -51.92 -0.42 0.37 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.39 6.91 8.32 -40.82 -0.34 6.57 16 29 H 0.06 0.73 7.81 -51.93 -0.41 0.33 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.12 2.16 5.97 -51.93 -0.31 1.85 16 32 H 0.04 0.57 8.02 -51.93 -0.42 0.15 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.05 7.72 -51.93 -0.40 0.65 16 35 H 0.15 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.15 0.99 8.06 -52.48 -0.42 0.57 16 37 H 0.20 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.05 0.50 7.57 -51.93 -0.39 0.11 16 39 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -32.79 327.09 -8.12 -40.92 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -5.58 Total: 5.06 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.76 Total: -3.03 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.82 Total: -49.08 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.14 Total: -14.58 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.79 -8.12 -40.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732206164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.511 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds