Wall clock time and date at job start Tue Mar 31 2020 00:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00016 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00033 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99692 * 180.02562 * 11 10 9 14 14 N 1.46902 * 109.46840 * 180.02562 * 13 11 10 15 15 C 1.48529 * 111.00088 * 52.60469 * 14 13 11 16 16 C 1.54939 * 103.22861 * 159.72003 * 15 14 13 17 17 C 1.54595 * 102.92156 * 322.58445 * 16 15 14 18 18 H 1.08997 * 110.30961 * 263.04032 * 17 16 15 19 19 C 1.50695 * 110.30908 * 140.87055 * 17 16 15 20 20 C 1.34515 * 125.78685 * 123.99853 * 19 17 16 21 21 C 1.41384 * 106.83955 * 179.89076 * 20 19 17 22 22 C 1.34513 * 106.84178 * 0.37482 * 21 20 19 23 23 O 1.34298 * 125.79554 * 304.31159 * 19 17 16 24 24 C 1.47901 * 110.99854 * 169.99840 * 14 13 11 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 27 27 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 28 28 H 0.97001 * 120.00220 * 0.02562 * 10 9 7 29 29 H 1.09002 * 109.47066 * 299.99726 * 13 11 10 30 30 H 1.09000 * 109.47577 * 60.00236 * 13 11 10 31 31 H 1.09001 * 110.66427 * 278.15271 * 15 14 13 32 32 H 1.08997 * 110.66939 * 41.28457 * 15 14 13 33 33 H 1.08998 * 110.72382 * 204.22572 * 16 15 14 34 34 H 1.09002 * 110.72533 * 80.94242 * 16 15 14 35 35 H 1.08005 * 126.58123 * 0.02782 * 20 19 17 36 36 H 1.08003 * 126.57700 * 180.11879 * 21 20 19 37 37 H 1.07997 * 125.78958 * 179.75439 * 22 21 20 38 38 H 1.09000 * 109.91868 * 333.50907 * 24 14 13 39 39 H 1.08998 * 109.91877 * 94.60753 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 0.0006 14 7 1.9985 -7.3010 0.0005 15 6 1.0035 -7.3411 -1.1016 16 6 0.7319 -8.8561 -1.2791 17 6 2.1249 -9.4862 -1.0504 18 1 2.6172 -9.6726 -2.0048 19 6 1.9973 -10.7675 -0.2674 20 6 2.4531 -11.9731 -0.6522 21 6 2.1223 -12.8837 0.3776 22 6 1.4767 -12.1817 1.3261 23 8 1.4040 -10.9005 0.9300 24 6 2.9112 -8.4400 -0.2388 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5571 0.8897 27 1 0.6240 -2.5568 -0.8903 28 1 3.1567 -3.4355 -0.0002 29 1 3.3597 -5.9715 -0.8894 30 1 3.3596 -5.9708 0.8906 31 1 0.0912 -6.8176 -0.8154 32 1 1.4223 -6.9159 -2.0137 33 1 0.3732 -9.0682 -2.2863 34 1 0.0209 -9.2106 -0.5328 35 1 2.9740 -12.2013 -1.5703 36 1 2.3418 -13.9410 0.3967 37 1 1.0835 -12.5807 2.2494 38 1 3.7803 -8.1066 -0.8059 39 1 3.2300 -8.8665 0.7123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732206164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:45 Heat of formation + Delta-G solvation = -37.812256 kcal Electronic energy + Delta-G solvation = -20957.092881 eV Core-core repulsion = 17672.408966 eV Total energy + Delta-G solvation = -3284.683915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.46821 -40.96828 -39.20329 -36.13329 -34.39802 -34.21298 -33.60416 -30.95246 -29.80729 -28.76444 -27.09197 -24.51112 -22.92496 -22.54562 -22.34803 -21.36896 -20.78920 -18.92856 -18.29028 -17.58126 -17.31280 -16.89408 -16.64553 -16.51454 -16.24970 -15.67055 -15.16656 -14.88102 -14.39167 -14.32693 -13.99202 -13.86789 -13.64279 -13.48599 -13.23916 -12.98022 -12.91326 -12.73457 -12.66730 -12.38020 -12.22522 -11.99264 -11.75619 -11.47884 -10.80282 -10.78257 -10.54398 -9.82058 -9.35988 -9.30209 -8.29375 -6.45986 0.86059 1.43027 1.45508 1.56640 1.76145 1.77609 2.17688 2.28822 2.48943 3.05528 3.09140 3.59174 3.68779 3.72092 4.00718 4.17479 4.23981 4.27062 4.32447 4.36343 4.47590 4.54790 4.66406 4.85670 4.90339 5.01896 5.05881 5.10979 5.16307 5.17588 5.24610 5.30047 5.50378 5.68480 5.71022 5.85056 5.87150 5.98203 6.31875 6.65420 6.93655 7.23674 7.52687 8.82860 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.057376 B = 0.002731 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.894122 B =10248.744854 C =10346.530752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.254 1.254 6 H -0.284 1.284 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.492 3.508 12 O -0.584 6.584 13 C 0.039 3.961 14 N -0.523 5.523 15 C 0.034 3.966 16 C -0.112 4.112 17 C -0.014 4.014 18 H 0.134 0.866 19 C -0.014 4.014 20 C -0.217 4.217 21 C -0.225 4.225 22 C -0.054 4.054 23 O -0.194 6.194 24 C 0.044 3.956 25 H 0.268 0.732 26 H -0.016 1.016 27 H -0.013 1.013 28 H 0.408 0.592 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.227 0.773 38 H 0.078 0.922 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.293 -23.563 -2.469 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.178 1.178 6 H -0.210 1.210 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.359 5.359 11 C 0.279 3.721 12 O -0.465 6.465 13 C -0.091 4.091 14 N -0.248 5.248 15 C -0.093 4.093 16 C -0.150 4.150 17 C -0.033 4.033 18 H 0.152 0.848 19 C -0.064 4.064 20 C -0.236 4.236 21 C -0.244 4.244 22 C -0.121 4.121 23 O -0.090 6.090 24 C -0.083 4.083 25 H 0.077 0.923 26 H 0.002 0.998 27 H 0.005 0.995 28 H 0.244 0.756 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.243 0.757 38 H 0.096 0.904 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.927 -23.387 -1.803 25.097 hybrid contribution 0.499 0.998 -0.548 1.243 sum 9.425 -22.388 -2.351 24.405 Atomic orbital electron populations 1.70144 1.08308 1.28550 1.50030 1.26088 0.95780 1.03974 0.93890 0.85150 0.78511 0.76928 0.78583 1.19657 1.17805 1.20995 1.21629 0.94333 0.90575 1.52789 0.89746 1.18499 0.88661 0.84322 0.93934 1.46173 1.11192 1.05438 1.73087 1.21308 0.89972 0.84877 0.75900 1.90599 1.19272 1.84947 1.51681 1.22232 0.94401 0.87191 1.05325 1.64599 1.13662 1.01517 1.44988 1.23347 0.97500 0.96658 0.91796 1.22571 0.96212 0.93486 1.02719 1.20728 0.97082 0.88064 0.97398 0.84830 1.22406 1.00462 0.97506 0.85998 1.21926 1.07063 0.91898 1.02737 1.22162 1.04910 1.02036 0.95247 1.24727 1.04405 0.80447 1.02511 1.84063 1.61971 1.30485 1.32522 1.23017 0.94738 0.90183 1.00360 0.92273 0.99773 0.99476 0.75587 0.88886 0.85745 0.90660 0.93667 0.88628 0.92218 0.81702 0.81464 0.75668 0.90383 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 2 C 0.00 0.12 5.46 84.66 0.46 0.58 16 3 Si 0.99 42.34 29.54 68.60 2.03 44.36 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.56 -30.25 9.28 25.60 0.24 -30.01 16 8 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 9 C 0.27 14.84 5.43 85.63 0.46 15.31 16 10 N -0.71 -29.81 5.55 -466.78 -2.59 -32.40 16 11 C 0.49 19.73 7.54 87.66 0.66 20.39 16 12 O -0.58 -28.96 13.52 -3.03 -0.04 -29.00 16 13 C 0.04 1.07 5.52 85.56 0.47 1.54 16 14 N -0.52 -14.93 5.26 -887.57 -4.67 -19.60 16 15 C 0.03 1.02 5.30 86.65 0.46 1.48 16 16 C -0.11 -2.59 6.60 31.80 0.21 -2.38 16 17 C -0.01 -0.27 3.44 -10.66 -0.04 -0.30 16 18 H 0.13 1.70 8.12 -2.39 -0.02 1.68 16 19 C -0.01 -0.28 5.57 24.83 0.14 -0.15 16 20 C -0.22 -3.79 10.80 22.19 0.24 -3.55 16 21 C -0.22 -3.63 10.91 22.19 0.24 -3.39 16 22 C -0.05 -0.95 12.09 66.97 0.81 -0.14 16 23 O -0.19 -4.67 10.49 -2.40 -0.03 -4.70 16 24 C 0.04 0.91 6.34 86.45 0.55 1.46 16 25 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 26 H -0.02 -0.98 8.14 -2.38 -0.02 -1.00 16 27 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 28 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 29 H 0.09 1.96 7.81 -2.39 -0.02 1.94 16 30 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.08 2.93 5.97 -2.39 -0.01 2.91 16 32 H 0.05 1.26 8.02 -2.39 -0.02 1.25 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.62 7.72 -2.39 -0.02 1.60 16 35 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 36 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.08 1.20 7.57 -2.39 -0.02 1.18 16 39 H 0.08 1.68 7.68 -2.39 -0.02 1.67 16 Total: -1.00 -75.56 327.09 0.18 -75.38 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: 0.28 Total: 21.42 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 4.91 Total: 0.85 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -6.97 Total: -108.32 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.07 Total: -33.70 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -75.56 0.18 -75.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732206164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.571 kcal (2) G-P(sol) polarization free energy of solvation -75.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds