Wall clock time and date at job start Mon Mar 30 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99983 * 180.02562 * 12 11 10 14 14 O 1.20822 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99870 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.43089 * 60.10855 * 15 13 12 17 17 C 1.53037 * 109.42332 * 179.97438 * 15 13 12 18 18 C 1.53388 * 109.71909 * 191.81082 * 17 15 13 19 19 C 1.50879 * 108.19521 * 309.46691 * 18 17 15 20 20 C 1.34573 * 128.32845 * 196.57029 * 19 18 17 21 21 N 1.35195 * 107.62005 * 179.85997 * 20 19 18 22 22 H 0.97003 * 126.00101 * 179.97438 * 21 20 19 23 23 N 1.40311 * 107.99505 * 0.03067 * 21 20 19 24 24 C 1.30128 * 108.12495 * 0.04928 * 23 21 20 25 25 C 1.50944 * 128.29003 * 179.70157 * 24 23 21 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 33 33 H 1.08996 * 109.42424 * 311.88483 * 17 15 13 34 34 H 1.08997 * 109.42759 * 71.73363 * 17 15 13 35 35 H 1.09004 * 109.71681 * 69.14225 * 18 17 15 36 36 H 1.08997 * 109.71819 * 189.79283 * 18 17 15 37 37 H 1.07994 * 126.18842 * 359.84369 * 20 19 18 38 38 H 1.09007 * 109.71114 * 77.14707 * 25 24 23 39 39 H 1.08997 * 109.72053 * 316.50244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4235 -6.0907 0.0005 13 6 1.9105 -7.3311 -0.0005 14 8 0.7126 -7.4894 -0.0014 15 6 2.8284 -8.5263 0.0006 16 1 3.4543 -8.5019 0.8927 17 6 1.9939 -9.8090 -0.0002 18 6 2.8960 -11.0136 0.2965 19 6 4.0840 -10.9524 -0.6316 20 6 4.9551 -11.9313 -0.9379 21 7 5.8521 -11.4222 -1.8120 22 1 6.5982 -11.9003 -2.2066 23 7 5.5150 -10.0807 -2.0470 24 6 4.4591 -9.7988 -1.3406 25 6 3.7190 -8.4866 -1.2474 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8531 -5.0451 0.8897 32 1 0.8537 -5.0446 -0.8902 33 1 1.2201 -9.7385 0.7642 34 1 1.5272 -9.9373 -0.9768 35 1 3.2354 -10.9728 1.3315 36 1 2.3435 -11.9376 0.1261 37 1 4.9404 -12.9409 -0.5546 38 1 3.1018 -8.3488 -2.1353 39 1 4.4326 -7.6670 -1.1641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744141567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:10 Heat of formation + Delta-G solvation = -42.218018 kcal Electronic energy + Delta-G solvation = -20671.118384 eV Core-core repulsion = 17386.243421 eV Total energy + Delta-G solvation = -3284.874963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.78004 -40.30235 -37.10284 -35.99863 -33.96702 -32.53320 -31.71950 -30.98886 -28.83310 -27.15789 -25.40121 -23.57385 -22.47407 -21.32726 -20.50623 -20.18820 -19.12648 -17.95608 -17.30776 -16.60325 -16.26869 -15.93585 -15.43928 -14.66989 -14.46746 -14.33415 -14.10781 -13.81682 -13.42276 -13.09896 -12.89614 -12.34484 -12.18946 -11.95296 -11.85470 -11.67706 -11.41700 -11.18635 -10.95172 -10.63976 -10.60799 -10.53607 -10.34861 -10.25652 -9.69358 -9.66758 -9.47044 -9.14168 -8.72569 -8.36954 -6.01850 -4.04703 1.60778 2.30065 2.44527 2.57517 2.91463 3.32528 3.38630 3.42333 4.10511 4.39042 4.45154 4.57468 4.67194 4.81415 4.99048 5.04132 5.18872 5.30131 5.34174 5.34380 5.50992 5.61411 5.64846 5.67584 5.73603 5.86839 5.89786 6.04933 6.05168 6.35889 6.54675 6.57323 6.88068 6.98528 7.01820 7.38905 7.62512 7.73679 7.95654 7.97372 8.38103 9.01687 9.59533 11.09637 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.002729 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.710018 B =10257.959410 C =10912.872469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.067 3.933 12 O -0.356 6.356 13 C 0.462 3.538 14 O -0.509 6.509 15 C -0.075 4.075 16 H 0.112 0.888 17 C -0.104 4.104 18 C -0.039 4.039 19 C -0.238 4.238 20 C 0.061 3.939 21 N -0.486 5.486 22 H 0.439 0.561 23 N -0.284 5.284 24 C 0.088 3.912 25 C -0.030 4.030 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.176 0.824 38 H 0.091 0.909 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.042 -26.590 -0.438 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.005 4.005 12 O -0.272 6.272 13 C 0.304 3.696 14 O -0.397 6.397 15 C -0.094 4.094 16 H 0.130 0.870 17 C -0.142 4.142 18 C -0.077 4.077 19 C -0.249 4.249 20 C -0.085 4.085 21 N -0.194 5.194 22 H 0.283 0.717 23 N -0.106 5.106 24 C -0.081 4.081 25 C -0.070 4.070 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.193 0.807 38 H 0.109 0.891 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.374 -26.034 -1.254 27.698 hybrid contribution 0.140 0.319 0.326 0.477 sum 9.515 -25.715 -0.929 27.435 Atomic orbital electron populations 1.69969 1.06085 1.26737 1.50618 1.25033 0.94878 0.99360 0.95228 0.86548 0.79814 0.83246 0.78135 1.20617 1.21208 1.19806 1.21179 0.93132 0.90697 1.50897 0.92425 1.19051 0.93854 0.90774 0.97664 1.21761 0.99908 0.91022 1.01984 1.23505 0.91229 0.83674 1.02138 1.86506 1.42640 1.15158 1.82917 1.23451 0.88446 0.84997 0.72679 1.90656 1.16909 1.86855 1.45281 1.21040 0.96324 0.90927 1.01155 0.86997 1.21490 0.97341 0.91330 1.04008 1.20007 0.92183 0.98295 0.97213 1.20170 1.03068 0.93496 1.08196 1.22064 0.91843 0.99731 0.94874 1.46350 1.26203 1.09288 1.37553 0.71721 1.77063 1.16731 0.93181 1.23638 1.22192 0.93886 0.96524 0.95514 1.20010 0.97164 0.92364 0.97425 0.92908 0.96252 0.96240 0.92146 0.92121 0.91531 0.91503 0.89936 0.90788 0.90873 0.90573 0.80671 0.89071 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.11 -2.27 5.53 -26.73 -0.15 -2.42 16 11 C 0.07 1.24 5.47 37.16 0.20 1.45 16 12 O -0.36 -5.84 10.14 -39.26 -0.40 -6.23 16 13 C 0.46 6.77 7.24 36.01 0.26 7.03 16 14 O -0.51 -8.78 15.51 -18.75 -0.29 -9.07 16 15 C -0.07 -0.80 2.57 -91.56 -0.24 -1.03 16 16 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 17 C -0.10 -0.97 4.65 -26.51 -0.12 -1.09 16 18 C -0.04 -0.28 6.28 -27.59 -0.17 -0.45 16 19 C -0.24 -2.09 5.89 -104.98 -0.62 -2.71 16 20 C 0.06 0.41 11.95 -17.37 -0.21 0.20 16 21 N -0.49 -3.78 7.37 30.35 0.22 -3.55 16 22 H 0.44 1.94 8.96 -182.43 -1.64 0.31 16 23 N -0.28 -3.28 12.68 33.75 0.43 -2.85 16 24 C 0.09 0.95 7.10 -82.34 -0.58 0.37 16 25 C -0.03 -0.33 5.53 -27.57 -0.15 -0.48 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 32 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 33 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 34 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 38 H 0.09 0.98 8.13 -51.92 -0.42 0.56 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -33.90 329.94 -8.74 -42.64 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -7.07 Total: -4.13 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.33 Total: -12.20 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 1.39 Total: -32.64 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.69 Total: -15.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.90 -8.74 -42.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744141567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.424 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds