Wall clock time and date at job start Mon Mar 30 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.45198 * 109.46884 * 180.02562 * 11 10 9 13 13 C 1.34231 * 116.99983 * 180.02562 * 12 11 10 14 14 O 1.20822 * 120.00142 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99870 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.43089 * 60.10855 * 15 13 12 17 17 C 1.53037 * 109.42332 * 179.97438 * 15 13 12 18 18 C 1.53388 * 109.71909 * 191.81082 * 17 15 13 19 19 C 1.50879 * 108.19521 * 309.46691 * 18 17 15 20 20 C 1.34573 * 128.32845 * 196.57029 * 19 18 17 21 21 N 1.35195 * 107.62005 * 179.85997 * 20 19 18 22 22 H 0.97003 * 126.00101 * 179.97438 * 21 20 19 23 23 N 1.40311 * 107.99505 * 0.03067 * 21 20 19 24 24 C 1.30128 * 108.12495 * 0.04928 * 23 21 20 25 25 C 1.50944 * 128.29003 * 179.70157 * 24 23 21 26 26 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 28 28 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 29 29 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 30 30 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 31 31 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 32 32 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 33 33 H 1.08996 * 109.42424 * 311.88483 * 17 15 13 34 34 H 1.08997 * 109.42759 * 71.73363 * 17 15 13 35 35 H 1.09004 * 109.71681 * 69.14225 * 18 17 15 36 36 H 1.08997 * 109.71819 * 189.79283 * 18 17 15 37 37 H 1.07994 * 126.18842 * 359.84369 * 20 19 18 38 38 H 1.09007 * 109.71114 * 77.14707 * 25 24 23 39 39 H 1.08997 * 109.72053 * 316.50244 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 8 2.4235 -6.0907 0.0005 13 6 1.9105 -7.3311 -0.0005 14 8 0.7126 -7.4894 -0.0014 15 6 2.8284 -8.5263 0.0006 16 1 3.4543 -8.5019 0.8927 17 6 1.9939 -9.8090 -0.0002 18 6 2.8960 -11.0136 0.2965 19 6 4.0840 -10.9524 -0.6316 20 6 4.9551 -11.9313 -0.9379 21 7 5.8521 -11.4222 -1.8120 22 1 6.5982 -11.9003 -2.2066 23 7 5.5150 -10.0807 -2.0470 24 6 4.4591 -9.7988 -1.3406 25 6 3.7190 -8.4866 -1.2474 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6240 -2.5566 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.8531 -5.0451 0.8897 32 1 0.8537 -5.0446 -0.8902 33 1 1.2201 -9.7385 0.7642 34 1 1.5272 -9.9373 -0.9768 35 1 3.2354 -10.9728 1.3315 36 1 2.3435 -11.9376 0.1261 37 1 4.9404 -12.9409 -0.5546 38 1 3.1018 -8.3488 -2.1353 39 1 4.4326 -7.6670 -1.1641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744141567.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:10 Heat of formation + Delta-G solvation = -62.676951 kcal Electronic energy + Delta-G solvation = -20672.005550 eV Core-core repulsion = 17386.243421 eV Total energy + Delta-G solvation = -3285.762129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.46557 -41.51739 -38.22801 -37.08344 -35.92659 -33.70807 -33.16008 -31.79604 -29.55732 -28.97771 -26.43426 -25.12847 -23.56776 -22.15118 -21.95515 -21.43872 -19.89453 -18.85967 -18.52092 -18.22562 -17.64386 -17.31225 -16.49135 -16.23656 -15.71681 -15.31795 -14.98130 -14.78661 -14.53041 -14.16302 -13.98635 -13.76365 -13.72436 -13.57721 -12.95164 -12.80946 -12.51477 -12.41645 -12.39528 -12.17277 -12.06071 -11.90499 -11.73744 -11.38626 -11.36837 -11.25982 -11.14216 -10.56827 -10.37540 -9.31612 -8.21439 -6.32839 1.00235 1.12707 1.41639 1.43217 1.54258 1.64643 1.77314 2.05264 2.41864 3.12426 3.32611 3.60734 3.76287 3.91082 4.02249 4.04961 4.08922 4.25470 4.35890 4.43961 4.45986 4.63495 4.66887 4.80463 4.82031 4.88568 4.99098 5.06554 5.09197 5.20826 5.26378 5.35375 5.44767 5.55076 5.64990 5.70281 5.80968 6.19965 6.52644 6.70080 6.74279 6.83313 7.36624 8.90843 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.002729 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.710018 B =10257.959410 C =10912.872469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.077 3.923 12 O -0.356 6.356 13 C 0.462 3.538 14 O -0.536 6.536 15 C -0.063 4.063 16 H 0.131 0.869 17 C -0.102 4.102 18 C -0.029 4.029 19 C -0.259 4.259 20 C 0.080 3.920 21 N -0.478 5.478 22 H 0.452 0.548 23 N -0.328 5.328 24 C 0.070 3.930 25 C -0.028 4.028 26 H 0.265 0.735 27 H -0.004 1.004 28 H -0.003 1.003 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.221 0.779 38 H 0.083 0.917 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.764 -28.299 0.128 30.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.011 4.011 10 C -0.132 4.132 11 C 0.003 3.997 12 O -0.273 6.273 13 C 0.306 3.694 14 O -0.425 6.425 15 C -0.082 4.082 16 H 0.148 0.852 17 C -0.140 4.140 18 C -0.067 4.067 19 C -0.271 4.271 20 C -0.067 4.067 21 N -0.188 5.188 22 H 0.299 0.701 23 N -0.152 5.152 24 C -0.097 4.097 25 C -0.067 4.067 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.237 0.763 38 H 0.101 0.899 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.123 -27.762 -0.697 29.916 hybrid contribution -0.393 0.744 0.124 0.850 sum 10.730 -27.019 -0.572 29.077 Atomic orbital electron populations 1.70103 1.07868 1.27922 1.51507 1.26012 0.95796 1.03514 0.94615 0.85392 0.78660 0.78149 0.78523 1.19758 1.20755 1.18557 1.21630 0.93738 0.91915 1.50802 0.91726 1.18934 0.94271 0.92484 0.95453 1.21455 0.98715 0.90500 1.02520 1.23126 0.90978 0.83744 1.01826 1.86502 1.41979 1.15542 1.83228 1.24315 0.88785 0.84992 0.71286 1.90646 1.18343 1.86980 1.46544 1.21129 0.95829 0.89362 1.01921 0.85157 1.21499 0.97537 0.91566 1.03349 1.19994 0.91290 0.97768 0.97619 1.20434 1.04343 0.93276 1.09010 1.22728 0.90033 1.00934 0.92972 1.46409 1.26709 1.08255 1.37439 0.70144 1.76969 1.17690 0.95442 1.25058 1.22207 0.94169 0.96986 0.96381 1.19912 0.96946 0.92885 0.97005 0.92675 0.98544 0.98423 0.91461 0.91575 0.91804 0.91987 0.90274 0.91874 0.89452 0.88547 0.76292 0.89889 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.54 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.06 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.37 4.97 29.85 0.15 1.52 16 10 C -0.09 -3.96 5.53 30.59 0.17 -3.79 16 11 C 0.08 2.88 5.47 71.98 0.39 3.27 16 12 O -0.36 -11.66 10.14 -51.42 -0.52 -12.18 16 13 C 0.46 13.51 7.24 71.24 0.52 14.03 16 14 O -0.54 -18.66 15.51 21.98 0.34 -18.32 16 15 C -0.06 -1.29 2.57 -11.40 -0.03 -1.32 16 16 H 0.13 2.22 8.10 -2.39 -0.02 2.20 16 17 C -0.10 -1.77 4.65 30.74 0.14 -1.62 16 18 C -0.03 -0.33 6.28 30.03 0.19 -0.14 16 19 C -0.26 -3.91 5.89 -20.10 -0.12 -4.03 16 20 C 0.08 0.80 11.95 83.34 1.00 1.80 16 21 N -0.48 -6.37 7.37 -57.89 -0.43 -6.80 16 22 H 0.45 2.99 8.96 -213.18 -1.91 1.08 16 23 N -0.33 -7.30 12.68 -47.13 -0.60 -7.90 16 24 C 0.07 1.46 7.10 43.44 0.31 1.77 16 25 C -0.03 -0.60 5.53 30.05 0.17 -0.44 16 26 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 27 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 28 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 29 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 32 H 0.06 2.37 8.13 -2.39 -0.02 2.35 16 33 H 0.08 1.43 7.68 -2.39 -0.02 1.42 16 34 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.22 0.10 8.06 -2.91 -0.02 0.08 16 38 H 0.08 1.84 8.13 -2.38 -0.02 1.82 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -73.98 329.94 3.82 -70.15 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -0.86 Total: 5.00 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.58 Total: -19.39 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -0.74 Total: -71.69 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.18 Total: -30.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -73.98 3.82 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744141567.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.475 kcal (2) G-P(sol) polarization free energy of solvation -73.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds