Wall clock time and date at job start Tue Mar 31 2020 00:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47328 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46965 * 180.02562 * 15 14 12 17 17 N 1.46503 * 109.46746 * 179.97438 * 16 15 14 18 18 C 1.34944 * 126.03827 * 125.00029 * 17 16 15 19 19 C 1.35319 * 107.74649 * 179.97438 * 18 17 16 20 20 C 1.39866 * 107.91944 * 359.97438 * 19 18 17 21 21 N 1.30840 * 108.20406 * 359.74107 * 20 19 18 22 22 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 23 23 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 24 24 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 26 26 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 27 27 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 28 28 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 29 29 H 1.09006 * 109.46468 * 299.99437 * 15 14 12 30 30 H 1.08998 * 109.47214 * 59.99382 * 15 14 12 31 31 H 1.09004 * 109.46759 * 299.99496 * 16 15 14 32 32 H 1.08998 * 109.47684 * 59.99639 * 16 15 14 33 33 H 1.08002 * 126.12830 * 359.95456 * 18 17 16 34 34 H 1.08006 * 126.03838 * 179.97438 * 19 18 17 35 35 H 1.08002 * 125.89692 * 180.02562 * 20 19 18 36 36 H 1.08998 * 117.50651 * 0.02562 * 22 9 7 37 37 H 1.09007 * 117.49575 * 145.02284 * 22 9 7 38 38 H 1.09004 * 117.50100 * 214.97609 * 23 9 7 39 39 H 1.09000 * 117.49932 * 359.97275 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 6 1.9180 -4.9654 5.4495 16 6 3.0186 -5.3759 6.4298 17 7 2.4107 -5.9274 7.6434 18 6 2.6686 -7.1380 8.1808 19 6 1.9074 -7.2666 9.2922 20 6 1.1591 -6.0941 9.4392 21 7 1.4643 -5.2882 8.4547 22 6 1.7506 -3.4762 -1.2120 23 6 0.4464 -2.7040 -1.4262 24 1 -0.4851 0.8400 0.0004 25 1 0.0687 -2.3413 1.6431 26 1 0.1035 -3.9677 0.9206 27 1 3.1884 -5.1435 3.7191 28 1 3.1534 -3.5168 4.4410 29 1 1.2821 -4.2110 5.9129 30 1 1.3176 -5.8375 5.1907 31 1 3.6548 -6.1301 5.9667 32 1 3.6186 -4.5035 6.6887 33 1 3.3587 -7.8729 7.7932 34 1 1.8822 -8.1232 9.9495 35 1 0.4547 -5.8877 10.2314 36 1 2.6146 -3.1810 -1.8073 37 1 1.6745 -4.5406 -0.9896 38 1 -0.4872 -3.2607 -1.3448 39 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744279623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:48 Heat of formation + Delta-G solvation = 7.717641 kcal Electronic energy + Delta-G solvation = -20648.121441 eV Core-core repulsion = 17365.411850 eV Total energy + Delta-G solvation = -3282.709591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.25607 -39.82182 -36.94392 -35.58832 -35.00106 -31.98800 -31.85124 -30.17237 -27.78624 -26.36430 -25.21232 -22.99886 -21.28058 -21.19764 -20.65711 -20.03345 -19.27538 -17.57887 -16.89435 -16.46221 -16.23157 -15.44340 -15.26071 -14.74733 -14.53186 -14.28809 -13.93198 -13.67208 -13.16566 -12.93699 -12.64991 -12.34244 -12.21401 -11.88218 -11.77072 -11.56621 -11.08036 -10.98978 -10.88040 -10.70591 -10.57354 -10.31822 -10.05271 -9.86731 -9.60778 -9.55745 -8.85588 -8.76740 -8.49050 -8.23575 -6.08891 -4.14630 1.74861 2.32423 2.70675 2.73451 3.28114 3.31457 3.34024 3.36053 4.28871 4.37236 4.60785 4.69935 4.76956 4.91355 5.03613 5.16698 5.19981 5.22503 5.38195 5.45095 5.58106 5.61849 5.81905 5.88151 5.96253 6.12642 6.21928 6.31020 6.49209 6.50787 6.63462 6.70385 6.84284 7.00411 7.24796 7.33830 7.45049 7.56187 7.84046 8.33023 8.42677 8.86789 9.51384 11.00500 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.003109 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.953409 B = 9005.180686 C = 9494.423190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.492 4.492 8 H 0.063 0.937 9 C 0.038 3.962 10 C 0.116 3.884 11 O -0.338 6.338 12 C 0.453 3.547 13 O -0.522 6.522 14 C -0.112 4.112 15 C -0.120 4.120 16 C 0.133 3.867 17 N -0.370 5.370 18 C 0.051 3.949 19 C -0.279 4.279 20 C 0.040 3.960 21 N -0.290 5.290 22 C -0.205 4.205 23 C -0.146 4.146 24 H 0.262 0.738 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.173 0.827 34 H 0.145 0.855 35 H 0.181 0.819 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.697 -13.340 13.098 19.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.043 3.957 11 O -0.253 6.253 12 C 0.296 3.704 13 O -0.413 6.413 14 C -0.150 4.150 15 C -0.158 4.158 16 C 0.012 3.988 17 N -0.152 5.152 18 C -0.095 4.095 19 C -0.309 4.309 20 C -0.146 4.146 21 N -0.111 5.111 22 C -0.242 4.242 23 C -0.183 4.183 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.056 0.944 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.107 0.893 33 H 0.190 0.810 34 H 0.163 0.837 35 H 0.198 0.802 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.031 -12.030 12.459 18.339 hybrid contribution 0.337 0.064 0.338 0.481 sum 6.368 -11.967 12.797 18.642 Atomic orbital electron populations 1.69984 1.05929 1.26888 1.48963 1.25021 0.94861 0.99109 0.94461 0.86640 0.79642 0.82884 0.78756 1.20122 1.21256 1.20111 1.20347 0.93053 0.88365 1.51201 0.91901 1.18769 0.98843 0.94168 0.84471 1.22895 0.85843 0.96959 0.90012 1.86508 1.41632 1.70947 1.26228 1.23399 0.89755 0.74746 0.82546 1.90639 1.21644 1.52050 1.76918 1.21208 0.96868 1.03614 0.93340 1.21652 0.97608 1.03178 0.93404 1.21775 0.95161 1.00381 0.81488 1.48771 1.32829 1.12470 1.21114 1.22592 1.01380 0.89441 0.96076 1.21509 1.05230 1.01815 1.02303 1.23914 1.00183 0.92735 0.97792 1.77425 1.07378 1.21462 1.04870 1.23004 0.98413 0.95671 1.07156 1.22548 0.92474 1.01274 1.02052 0.92795 0.90575 0.94390 0.87821 0.87414 0.89334 0.90495 0.88305 0.89288 0.81016 0.83692 0.80163 0.90053 0.91578 0.91642 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.93 12.93 55.43 0.72 -24.21 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.89 21.00 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.49 -13.37 8.77 -34.44 -0.30 -13.67 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.94 1.61 -155.66 -0.25 0.69 16 10 C 0.12 2.77 5.29 37.15 0.20 2.96 16 11 O -0.34 -7.28 10.16 -39.25 -0.40 -7.68 16 12 C 0.45 8.38 7.96 36.01 0.29 8.66 16 13 O -0.52 -11.21 15.73 -18.76 -0.30 -11.51 16 14 C -0.11 -1.35 5.81 -27.88 -0.16 -1.51 16 15 C -0.12 -1.41 4.70 -26.73 -0.13 -1.53 16 16 C 0.13 1.16 6.51 -4.04 -0.03 1.13 16 17 N -0.37 -4.05 3.68 -61.36 -0.23 -4.28 16 18 C 0.05 0.45 11.45 -17.22 -0.20 0.26 16 19 C -0.28 -2.54 10.80 -40.01 -0.43 -2.97 16 20 C 0.04 0.42 12.03 -17.37 -0.21 0.22 16 21 N -0.29 -3.85 12.42 30.62 0.38 -3.47 16 22 C -0.21 -4.43 9.96 -26.70 -0.27 -4.70 16 23 C -0.15 -3.38 9.43 -26.69 -0.25 -3.64 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.08 2.02 8.13 -51.93 -0.42 1.60 16 26 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 31 H 0.10 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 35 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -33.26 343.26 -7.38 -40.64 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.88 Total: 1.67 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -1.83 Total: -12.31 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.87 Total: -31.96 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.69 Total: -19.19 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.26 -7.38 -40.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.356 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds