Wall clock time and date at job start Tue Mar 31 2020 00:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 C 1.53003 * 109.47328 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46965 * 180.02562 * 15 14 12 17 17 N 1.46503 * 109.46746 * 179.97438 * 16 15 14 18 18 C 1.34944 * 126.03827 * 125.00029 * 17 16 15 19 19 C 1.35319 * 107.74649 * 179.97438 * 18 17 16 20 20 C 1.39866 * 107.91944 * 359.97438 * 19 18 17 21 21 N 1.30840 * 108.20406 * 359.74107 * 20 19 18 22 22 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 23 23 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 24 24 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 26 26 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 27 27 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 28 28 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 29 29 H 1.09006 * 109.46468 * 299.99437 * 15 14 12 30 30 H 1.08998 * 109.47214 * 59.99382 * 15 14 12 31 31 H 1.09004 * 109.46759 * 299.99496 * 16 15 14 32 32 H 1.08998 * 109.47684 * 59.99639 * 16 15 14 33 33 H 1.08002 * 126.12830 * 359.95456 * 18 17 16 34 34 H 1.08006 * 126.03838 * 179.97438 * 19 18 17 35 35 H 1.08002 * 125.89692 * 180.02562 * 20 19 18 36 36 H 1.08998 * 117.50651 * 0.02562 * 22 9 7 37 37 H 1.09007 * 117.49575 * 145.02284 * 22 9 7 38 38 H 1.09004 * 117.50100 * 214.97609 * 23 9 7 39 39 H 1.09000 * 117.49932 * 359.97275 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 6 1.9180 -4.9654 5.4495 16 6 3.0186 -5.3759 6.4298 17 7 2.4107 -5.9274 7.6434 18 6 2.6686 -7.1380 8.1808 19 6 1.9074 -7.2666 9.2922 20 6 1.1591 -6.0941 9.4392 21 7 1.4643 -5.2882 8.4547 22 6 1.7506 -3.4762 -1.2120 23 6 0.4464 -2.7040 -1.4262 24 1 -0.4851 0.8400 0.0004 25 1 0.0687 -2.3413 1.6431 26 1 0.1035 -3.9677 0.9206 27 1 3.1884 -5.1435 3.7191 28 1 3.1534 -3.5168 4.4410 29 1 1.2821 -4.2110 5.9129 30 1 1.3176 -5.8375 5.1907 31 1 3.6548 -6.1301 5.9667 32 1 3.6186 -4.5035 6.6887 33 1 3.3587 -7.8729 7.7932 34 1 1.8822 -8.1232 9.9495 35 1 0.4547 -5.8877 10.2314 36 1 2.6146 -3.1810 -1.8073 37 1 1.6745 -4.5406 -0.9896 38 1 -0.4872 -3.2607 -1.3448 39 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744279623.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:47 Heat of formation + Delta-G solvation = -11.521015 kcal Electronic energy + Delta-G solvation = -20648.955692 eV Core-core repulsion = 17365.411850 eV Total energy + Delta-G solvation = -3283.543841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.97698 -41.38820 -38.69078 -37.08663 -36.14085 -34.04314 -32.75525 -30.90500 -29.17289 -27.83749 -27.07178 -24.02370 -22.99079 -21.97751 -21.54307 -21.26563 -21.19105 -18.68364 -18.44947 -17.90975 -17.62101 -16.88578 -16.62774 -16.37325 -15.73258 -15.42328 -15.17143 -14.78531 -14.50530 -14.01560 -13.84137 -13.60193 -13.58630 -13.25324 -12.96663 -12.94240 -12.82005 -12.70573 -12.42098 -12.10528 -11.98546 -11.71700 -11.67111 -11.46284 -11.37418 -10.79882 -10.50819 -10.36333 -10.09931 -9.47226 -8.15520 -6.27303 1.04222 1.25740 1.42092 1.42840 1.50692 1.60713 1.93794 2.00209 2.41158 3.13576 3.38333 3.59278 3.67104 3.86287 4.11138 4.11692 4.13945 4.21904 4.36117 4.36882 4.43928 4.48093 4.59251 4.64322 4.73602 4.86607 4.92297 4.95245 4.99812 5.16508 5.16755 5.20324 5.44918 5.56873 5.71946 5.74032 5.79061 6.22885 6.33761 6.78505 6.82613 6.83872 7.41884 8.93240 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.003109 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.953409 B = 9005.180686 C = 9494.423190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.004 3.996 10 C 0.129 3.871 11 O -0.346 6.346 12 C 0.444 3.556 13 O -0.560 6.560 14 C -0.098 4.098 15 C -0.110 4.110 16 C 0.134 3.866 17 N -0.382 5.382 18 C 0.056 3.944 19 C -0.291 4.291 20 C 0.029 3.971 21 N -0.349 5.349 22 C -0.174 4.174 23 C -0.151 4.151 24 H 0.261 0.739 25 H 0.035 0.965 26 H 0.046 0.954 27 H 0.147 0.853 28 H 0.129 0.871 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.098 0.902 33 H 0.214 0.786 34 H 0.168 0.832 35 H 0.197 0.803 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.311 -14.992 13.427 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.004 3.996 10 C 0.055 3.945 11 O -0.262 6.262 12 C 0.290 3.710 13 O -0.452 6.452 14 C -0.135 4.135 15 C -0.149 4.149 16 C 0.014 3.986 17 N -0.165 5.165 18 C -0.090 4.090 19 C -0.320 4.320 20 C -0.157 4.157 21 N -0.171 5.171 22 C -0.211 4.211 23 C -0.188 4.188 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.165 0.835 28 H 0.147 0.853 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.116 0.884 33 H 0.230 0.770 34 H 0.186 0.814 35 H 0.214 0.786 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.664 -13.693 12.797 20.648 hybrid contribution -0.496 0.499 0.292 0.762 sum 8.169 -13.194 13.089 20.301 Atomic orbital electron populations 1.70107 1.07285 1.27411 1.50145 1.25767 0.95594 1.02330 0.94253 0.85679 0.78444 0.78888 0.79081 1.19151 1.21281 1.19577 1.20645 0.93081 0.89777 1.50859 0.92298 1.18868 1.00492 0.94845 0.85439 1.22460 0.86091 0.96040 0.89919 1.86514 1.40695 1.71570 1.27407 1.24767 0.91000 0.73201 0.82054 1.90625 1.23821 1.53451 1.77265 1.21378 0.94974 1.05570 0.91598 1.21502 0.98213 1.01308 0.93829 1.21931 0.94006 1.02351 0.80310 1.48962 1.32801 1.13206 1.21485 1.23309 1.01121 0.89034 0.95508 1.21900 1.05024 1.01996 1.03111 1.24387 1.00417 0.93230 0.97628 1.77357 1.09605 1.23579 1.06569 1.23016 0.97376 0.96388 1.04308 1.22490 0.93929 1.01471 1.00931 0.93039 0.94659 0.93609 0.83500 0.85306 0.93174 0.92011 0.83877 0.88383 0.76984 0.81442 0.78589 0.89378 0.88957 0.90621 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.80 12.93 21.45 0.28 -52.52 16 2 C 0.02 1.14 5.39 84.65 0.46 1.60 16 3 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.51 -27.59 8.77 25.60 0.22 -27.37 16 8 H 0.06 3.17 7.82 -2.91 -0.02 3.14 16 9 C 0.00 0.20 1.61 -52.93 -0.08 0.11 16 10 C 0.13 6.25 5.29 71.98 0.38 6.63 16 11 O -0.35 -14.81 10.16 -51.40 -0.52 -15.34 16 12 C 0.44 16.32 7.96 71.24 0.57 16.89 16 13 O -0.56 -24.73 15.73 21.94 0.35 -24.39 16 14 C -0.10 -2.12 5.81 29.85 0.17 -1.94 16 15 C -0.11 -2.46 4.70 30.59 0.14 -2.32 16 16 C 0.13 1.96 6.51 86.38 0.56 2.52 16 17 N -0.38 -7.72 3.68 -348.05 -1.28 -9.00 16 18 C 0.06 0.83 11.45 83.54 0.96 1.79 16 19 C -0.29 -4.74 10.80 21.99 0.24 -4.50 16 20 C 0.03 0.60 12.03 85.23 1.02 1.62 16 21 N -0.35 -9.30 12.42 -57.02 -0.71 -10.01 16 22 C -0.17 -7.20 9.96 30.62 0.30 -6.90 16 23 C -0.15 -6.97 9.43 30.62 0.29 -6.68 16 24 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 25 H 0.03 1.96 8.13 -2.39 -0.02 1.94 16 26 H 0.05 2.09 8.09 -2.39 -0.02 2.07 16 27 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.50 8.10 -2.38 -0.02 1.48 16 30 H 0.06 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.14 0.82 8.07 -2.39 -0.02 0.80 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.09 3.33 8.14 -2.38 -0.02 3.31 16 38 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 39 H 0.07 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -75.68 343.26 6.40 -69.28 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.02 Total: 15.27 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 5.23 Total: -18.55 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -1.71 Total: -71.53 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -0.18 Total: -39.73 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -75.68 6.40 -69.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744279623.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.759 kcal (2) G-P(sol) polarization free energy of solvation -75.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds