Wall clock time and date at job start Mon Mar 30 2020 23:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46814 * 2 1 4 4 C 1.42904 * 113.99671 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46794 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46721 * 180.02562 * 5 4 3 7 7 O 1.45201 * 109.46867 * 179.97438 * 6 5 4 8 8 C 1.34804 * 116.99925 * 179.97438 * 7 6 5 9 9 O 1.21526 * 120.00158 * 359.97438 * 8 7 6 10 10 C 1.47288 * 120.00213 * 180.02562 * 8 7 6 11 11 C 1.39296 * 120.28603 * 354.83939 * 10 8 7 12 12 C 1.38205 * 120.08627 * 180.27692 * 11 10 8 13 13 C 1.38842 * 120.68093 * 359.73704 * 12 11 10 14 14 C 1.37598 * 120.58249 * 0.02562 * 13 12 11 15 15 C 1.40703 * 119.88779 * 0.02562 * 14 13 12 16 16 C 1.40861 * 120.33362 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99855 * 145.73459 * 16 15 14 18 18 C 1.40294 * 120.00053 * 325.74709 * 16 15 14 19 19 N 1.30615 * 119.99944 * 339.67310 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 159.68073 * 18 16 15 21 21 H 1.48501 * 109.47051 * 269.99428 * 20 18 16 22 22 H 1.48500 * 109.47071 * 29.99448 * 20 18 16 23 23 H 1.48504 * 109.46997 * 149.99554 * 20 18 16 24 24 H 1.08996 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47267 * 299.99525 * 1 2 3 26 26 H 1.08997 * 109.47366 * 59.99400 * 1 2 3 27 27 H 1.08996 * 109.46831 * 240.00353 * 2 1 3 28 28 H 1.09003 * 109.47295 * 119.99870 * 2 1 3 29 29 H 1.09003 * 109.46529 * 60.00081 * 4 3 2 30 30 H 1.09002 * 109.47167 * 300.00488 * 4 3 2 31 31 H 1.08999 * 109.47133 * 60.00588 * 5 4 3 32 32 H 1.09002 * 109.47577 * 300.00133 * 5 4 3 33 33 H 1.08999 * 109.47037 * 60.00284 * 6 5 4 34 34 H 1.09000 * 109.47230 * 299.99749 * 6 5 4 35 35 H 1.08000 * 119.95653 * 0.02562 * 11 10 8 36 36 H 1.07997 * 119.65882 * 179.75950 * 12 11 10 37 37 H 1.07994 * 119.70815 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.05357 * 180.02562 * 14 13 12 39 39 H 0.97001 * 119.99911 * 355.30114 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 6 5.3505 3.0592 0.0012 7 8 5.7249 4.4621 0.0011 8 6 7.0432 4.7438 0.0016 9 8 7.8573 3.8415 0.0026 10 6 7.4970 6.1450 0.0022 11 6 6.5737 7.1824 -0.1060 12 6 7.0046 8.4956 -0.1108 13 6 8.3552 8.7985 -0.0030 14 6 9.2907 7.7957 0.1101 15 6 8.8790 6.4503 0.1165 16 6 9.8286 5.4163 0.2314 17 1 9.5802 4.5120 0.7670 18 6 11.0973 5.5613 -0.3498 19 7 11.2818 6.4310 -1.3067 20 14 12.5227 4.5104 0.2447 21 1 13.2240 5.2083 1.3521 22 1 12.0067 3.2053 0.7302 23 1 13.4704 4.2823 -0.8756 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8339 0.9765 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4222 3.4217 0.8912 32 1 3.4228 3.4223 -0.8888 33 1 5.7532 2.5761 -0.8891 34 1 5.7534 2.5754 0.8909 35 1 5.5202 6.9602 -0.1904 36 1 6.2831 9.2944 -0.1990 37 1 8.6745 9.8301 -0.0081 38 1 10.3391 8.0410 0.1939 39 1 10.5284 6.9279 -1.6623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744614304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:10 Heat of formation + Delta-G solvation = -136.072893 kcal Electronic energy + Delta-G solvation = -20738.656055 eV Core-core repulsion = 17417.418488 eV Total energy + Delta-G solvation = -3321.237567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.47477 -38.32073 -37.50370 -35.54439 -34.02406 -33.19687 -30.98932 -30.10556 -29.45300 -25.99587 -25.12722 -23.05159 -22.73287 -21.44024 -21.04704 -19.83852 -18.04187 -17.02006 -16.68388 -16.58242 -15.71398 -15.58862 -14.77954 -14.55446 -14.35360 -14.13048 -13.92705 -13.42701 -13.01337 -12.83439 -12.60535 -12.25954 -12.08396 -11.90853 -11.75222 -11.50407 -11.24601 -11.10517 -11.04804 -10.94674 -10.75411 -10.44370 -10.23991 -9.93178 -9.81069 -9.76603 -9.16005 -8.90174 -7.87860 -7.70229 -7.28542 -4.59559 2.07552 2.69577 3.10595 3.14087 3.25368 3.35479 3.77419 3.84825 3.96284 4.52423 4.75060 4.85439 4.86073 5.05477 5.08473 5.16529 5.29660 5.33057 5.40127 5.50782 5.58777 5.61738 5.81133 5.94883 5.99880 6.05369 6.10864 6.21535 6.47487 6.70675 6.90421 6.98540 7.16449 7.30292 7.45339 7.54336 7.70096 7.79176 8.03649 8.12009 8.59312 8.71474 9.00491 9.92325 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.003557 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.808004 B = 7868.905855 C = 9079.576033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.389 6.389 4 C 0.067 3.933 5 C -0.117 4.117 6 C 0.073 3.927 7 O -0.369 6.369 8 C 0.504 3.496 9 O -0.515 6.515 10 C -0.255 4.255 11 C -0.023 4.023 12 C -0.261 4.261 13 C -0.070 4.070 14 C -0.201 4.201 15 C 0.121 3.879 16 C -0.465 4.465 17 H 0.105 0.895 18 C 0.032 3.968 19 N -0.785 5.785 20 Si 1.074 2.926 21 H -0.273 1.273 22 H -0.272 1.272 23 H -0.275 1.275 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.965 -8.189 1.836 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.308 6.308 4 C -0.009 4.009 5 C -0.155 4.155 6 C -0.001 4.001 7 O -0.288 6.288 8 C 0.355 3.645 9 O -0.406 6.406 10 C -0.257 4.257 11 C -0.041 4.041 12 C -0.280 4.280 13 C -0.089 4.089 14 C -0.220 4.220 15 C 0.117 3.883 16 C -0.492 4.492 17 H 0.122 0.878 18 C -0.191 4.191 19 N -0.408 5.408 20 Si 0.896 3.104 21 H -0.199 1.199 22 H -0.197 1.197 23 H -0.200 1.200 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.230 -8.570 1.579 13.438 hybrid contribution -1.538 0.022 0.121 1.543 sum -11.768 -8.548 1.700 14.644 Atomic orbital electron populations 1.21745 0.93747 1.02168 1.03211 1.22462 0.95592 0.83826 1.00129 1.87871 1.21082 1.26422 1.95475 1.22304 0.81186 0.96856 1.00596 1.21372 0.94139 0.95196 1.04786 1.22530 0.93902 0.81571 1.02140 1.86557 1.28593 1.27469 1.86148 1.21328 0.78745 0.90839 0.73630 1.90737 1.53458 1.48475 1.47883 1.18677 0.94536 0.87470 1.25049 1.20918 0.97413 0.92518 0.93265 1.20338 0.95137 0.95211 1.17331 1.20811 0.93462 0.97459 0.97150 1.21198 0.98476 0.92327 1.09990 1.17476 0.90366 0.92665 0.87799 1.21226 0.96881 1.03692 1.27363 0.87765 1.27322 1.01359 0.96883 0.93541 1.70360 1.38074 1.15627 1.16733 0.83509 0.73923 0.75983 0.76947 1.19879 1.19712 1.19988 0.91152 0.91819 0.91809 0.93377 0.93381 0.92946 0.92958 0.90100 0.90107 0.91794 0.91798 0.87734 0.88530 0.88597 0.87306 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.50 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.64 10.34 -35.23 -0.36 -5.00 16 4 C 0.07 0.76 5.94 37.15 0.22 0.98 16 5 C -0.12 -1.54 5.96 -26.73 -0.16 -1.70 16 6 C 0.07 1.19 5.48 37.16 0.20 1.39 16 7 O -0.37 -7.55 9.48 -40.78 -0.39 -7.93 16 8 C 0.50 12.24 7.85 34.41 0.27 12.51 16 9 O -0.51 -13.53 13.38 -19.28 -0.26 -13.78 16 10 C -0.25 -6.40 5.92 -104.39 -0.62 -7.02 16 11 C -0.02 -0.51 9.60 -39.20 -0.38 -0.88 16 12 C -0.26 -5.56 10.03 -39.37 -0.39 -5.96 16 13 C -0.07 -1.54 10.01 -39.59 -0.40 -1.93 16 14 C -0.20 -4.95 7.90 -38.88 -0.31 -5.25 16 15 C 0.12 3.21 5.16 -106.54 -0.55 2.66 16 16 C -0.47 -12.59 7.62 -37.82 -0.29 -12.88 16 17 H 0.10 2.93 5.99 -52.49 -0.31 2.62 16 18 C 0.03 0.80 5.01 -17.30 -0.09 0.72 16 19 N -0.79 -20.62 12.60 55.57 0.70 -19.92 16 20 Si 1.07 21.97 29.98 -169.99 -5.10 16.87 16 21 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.10 2.10 7.61 -52.49 -0.40 1.70 16 36 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.11 2.70 6.99 -52.49 -0.37 2.33 16 39 H 0.30 8.07 6.62 -40.82 -0.27 7.80 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -29.37 333.41 -7.88 -37.25 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.64 Total: 4.83 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -1.85 Total: -17.34 kcal Atomic # 7 Polarization: -20.62 SS G_CDS: 0.70 Total: -19.92 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.01 Total: -26.72 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.10 Total: 16.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.37 -7.88 -37.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744614304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.825 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds