Wall clock time and date at job start Mon Mar 30 2020 23:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42908 * 109.46814 * 2 1 4 4 C 1.42904 * 113.99671 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46794 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46721 * 180.02562 * 5 4 3 7 7 O 1.45201 * 109.46867 * 179.97438 * 6 5 4 8 8 C 1.34804 * 116.99925 * 179.97438 * 7 6 5 9 9 O 1.21526 * 120.00158 * 359.97438 * 8 7 6 10 10 C 1.47288 * 120.00213 * 180.02562 * 8 7 6 11 11 C 1.39296 * 120.28603 * 354.83939 * 10 8 7 12 12 C 1.38205 * 120.08627 * 180.27692 * 11 10 8 13 13 C 1.38842 * 120.68093 * 359.73704 * 12 11 10 14 14 C 1.37598 * 120.58249 * 0.02562 * 13 12 11 15 15 C 1.40703 * 119.88779 * 0.02562 * 14 13 12 16 16 C 1.40861 * 120.33362 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99855 * 145.73459 * 16 15 14 18 18 C 1.40294 * 120.00053 * 325.74709 * 16 15 14 19 19 N 1.30615 * 119.99944 * 339.67310 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 159.68073 * 18 16 15 21 21 H 1.48501 * 109.47051 * 269.99428 * 20 18 16 22 22 H 1.48500 * 109.47071 * 29.99448 * 20 18 16 23 23 H 1.48504 * 109.46997 * 149.99554 * 20 18 16 24 24 H 1.08996 * 109.47184 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47267 * 299.99525 * 1 2 3 26 26 H 1.08997 * 109.47366 * 59.99400 * 1 2 3 27 27 H 1.08996 * 109.46831 * 240.00353 * 2 1 3 28 28 H 1.09003 * 109.47295 * 119.99870 * 2 1 3 29 29 H 1.09003 * 109.46529 * 60.00081 * 4 3 2 30 30 H 1.09002 * 109.47167 * 300.00488 * 4 3 2 31 31 H 1.08999 * 109.47133 * 60.00588 * 5 4 3 32 32 H 1.09002 * 109.47577 * 300.00133 * 5 4 3 33 33 H 1.08999 * 109.47037 * 60.00284 * 6 5 4 34 34 H 1.09000 * 109.47230 * 299.99749 * 6 5 4 35 35 H 1.08000 * 119.95653 * 0.02562 * 11 10 8 36 36 H 1.07997 * 119.65882 * 179.75950 * 12 11 10 37 37 H 1.07994 * 119.70815 * 180.02562 * 13 12 11 38 38 H 1.07997 * 120.05357 * 180.02562 * 14 13 12 39 39 H 0.97001 * 119.99911 * 355.30114 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9384 0.0012 6 6 5.3505 3.0592 0.0012 7 8 5.7249 4.4621 0.0011 8 6 7.0432 4.7438 0.0016 9 8 7.8573 3.8415 0.0026 10 6 7.4970 6.1450 0.0022 11 6 6.5737 7.1824 -0.1060 12 6 7.0046 8.4956 -0.1108 13 6 8.3552 8.7985 -0.0030 14 6 9.2907 7.7957 0.1101 15 6 8.8790 6.4503 0.1165 16 6 9.8286 5.4163 0.2314 17 1 9.5802 4.5120 0.7670 18 6 11.0973 5.5613 -0.3498 19 7 11.2818 6.4310 -1.3067 20 14 12.5227 4.5104 0.2447 21 1 13.2240 5.2083 1.3521 22 1 12.0067 3.2053 0.7302 23 1 13.4704 4.2823 -0.8756 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8339 0.9765 -0.8892 30 1 3.8333 0.9767 0.8908 31 1 3.4222 3.4217 0.8912 32 1 3.4228 3.4223 -0.8888 33 1 5.7532 2.5761 -0.8891 34 1 5.7534 2.5754 0.8909 35 1 5.5202 6.9602 -0.1904 36 1 6.2831 9.2944 -0.1990 37 1 8.6745 9.8301 -0.0081 38 1 10.3391 8.0410 0.1939 39 1 10.5284 6.9279 -1.6623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744614304.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:10 Heat of formation + Delta-G solvation = -151.319116 kcal Electronic energy + Delta-G solvation = -20739.317181 eV Core-core repulsion = 17417.418488 eV Total energy + Delta-G solvation = -3321.898693 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26724 -39.42598 -39.06670 -37.29887 -35.87589 -34.31145 -32.13216 -31.61903 -31.27428 -27.57721 -26.66253 -24.45537 -23.71125 -22.95143 -22.52690 -21.62750 -19.92870 -18.52315 -17.86656 -17.76428 -17.16679 -16.99048 -16.57371 -16.04631 -15.67043 -15.43891 -15.32588 -15.08692 -14.51247 -14.19529 -14.04062 -13.76652 -13.40732 -13.04937 -12.88195 -12.83667 -12.71907 -12.59725 -12.46923 -12.11480 -12.05342 -11.99576 -11.96788 -11.59113 -11.46445 -11.00648 -10.79092 -10.61133 -9.74450 -9.58608 -9.23431 -6.58112 0.20278 0.86288 1.46548 1.61312 1.74669 1.77148 1.90493 2.27652 2.64656 2.76762 3.44283 3.78934 3.94154 4.01250 4.14559 4.18242 4.27874 4.28714 4.30680 4.38794 4.43100 4.47604 4.51641 4.73264 4.84401 4.87270 4.94296 5.00980 5.03139 5.06016 5.26057 5.34455 5.48898 5.59315 5.66873 5.80157 5.90436 6.13257 6.19642 6.25055 6.67117 6.76257 7.15029 7.94761 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020769 B = 0.003557 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.808004 B = 7868.905855 C = 9079.576033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.409 6.409 4 C 0.070 3.930 5 C -0.106 4.106 6 C 0.068 3.932 7 O -0.365 6.365 8 C 0.503 3.497 9 O -0.543 6.543 10 C -0.279 4.279 11 C -0.027 4.027 12 C -0.246 4.246 13 C -0.062 4.062 14 C -0.222 4.222 15 C 0.099 3.901 16 C -0.504 4.504 17 H 0.083 0.917 18 C 0.000 4.000 19 N -0.805 5.805 20 Si 1.119 2.881 21 H -0.253 1.253 22 H -0.272 1.272 23 H -0.266 1.266 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.484 -7.903 2.061 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.330 6.330 4 C -0.006 4.006 5 C -0.143 4.143 6 C -0.006 4.006 7 O -0.283 6.283 8 C 0.355 3.645 9 O -0.437 6.437 10 C -0.282 4.282 11 C -0.045 4.045 12 C -0.265 4.265 13 C -0.081 4.081 14 C -0.241 4.241 15 C 0.095 3.905 16 C -0.531 4.531 17 H 0.100 0.900 18 C -0.217 4.217 19 N -0.427 5.427 20 Si 0.936 3.064 21 H -0.178 1.178 22 H -0.197 1.197 23 H -0.191 1.191 24 H 0.110 0.890 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.116 0.884 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.793 -8.268 1.806 14.515 hybrid contribution -1.350 -0.013 0.052 1.351 sum -13.143 -8.280 1.858 15.645 Atomic orbital electron populations 1.21773 0.92737 1.03470 1.02726 1.22712 0.96482 0.82581 1.01079 1.87833 1.21049 1.28436 1.95660 1.22240 0.81405 0.95352 1.01634 1.21271 0.91374 0.96900 1.04782 1.22849 0.96151 0.79254 1.02326 1.86510 1.26238 1.30160 1.85424 1.21343 0.79672 0.90534 0.72982 1.90716 1.54580 1.49249 1.49109 1.19062 0.94857 0.88933 1.25355 1.21239 0.98243 0.92446 0.92548 1.20862 0.95610 0.95820 1.14182 1.21242 0.93411 0.98611 0.94795 1.21200 0.98719 0.92421 1.11765 1.17857 0.91241 0.93599 0.87812 1.21180 0.98559 1.03611 1.29784 0.89954 1.28565 1.03269 0.97188 0.92666 1.70469 1.37179 1.17211 1.17892 0.82975 0.71493 0.74640 0.77324 1.17756 1.19728 1.19052 0.88981 0.92278 0.92300 0.92445 0.92396 0.91992 0.91910 0.90052 0.90139 0.91762 0.91587 0.85240 0.84378 0.84995 0.88420 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.28 71.98 0.74 -1.19 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -9.11 10.34 -148.98 -1.54 -10.65 16 4 C 0.07 1.47 5.94 71.98 0.43 1.89 16 5 C -0.11 -2.63 5.96 30.59 0.18 -2.45 16 6 C 0.07 2.18 5.48 71.98 0.39 2.58 16 7 O -0.36 -14.82 9.48 -57.15 -0.54 -15.36 16 8 C 0.50 24.88 7.85 70.20 0.55 25.43 16 9 O -0.54 -29.58 13.38 19.75 0.26 -29.32 16 10 C -0.28 -14.14 5.92 -19.71 -0.12 -14.26 16 11 C -0.03 -1.14 9.60 22.52 0.22 -0.92 16 12 C -0.25 -9.63 10.03 22.41 0.22 -9.40 16 13 C -0.06 -2.58 10.01 22.26 0.22 -2.36 16 14 C -0.22 -11.00 7.90 22.72 0.18 -10.83 16 15 C 0.10 5.37 5.16 -21.10 -0.11 5.26 16 16 C -0.50 -28.51 7.62 23.41 0.18 -28.33 16 17 H 0.08 4.90 5.99 -2.91 -0.02 4.88 16 18 C 0.00 0.00 5.01 85.37 0.43 0.43 16 19 N -0.80 -43.57 12.60 21.88 0.28 -43.29 16 20 Si 1.12 45.21 29.98 68.60 2.06 47.27 16 21 H -0.25 -9.33 7.11 99.48 0.71 -8.63 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 23 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.13 4.83 7.61 -2.91 -0.02 4.81 16 36 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.10 4.97 6.99 -2.91 -0.02 4.95 16 39 H 0.29 15.96 6.62 -92.71 -0.61 15.35 16 Total: -1.00 -65.25 333.41 5.70 -59.55 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 1.19 Total: 24.72 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 4.00 Total: -32.92 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.28 Total: -43.29 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -1.82 Total: -55.33 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.06 Total: 47.27 kcal Total: -65.25 5.70 -59.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744614304.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.768 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds