Wall clock time and date at job start Mon Mar 30 2020 23:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00257 * 2 1 4 4 C 1.52991 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47149 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47040 * 55.00393 * 5 4 3 7 7 C 1.52996 * 109.47048 * 174.99926 * 5 4 3 8 8 O 1.45195 * 109.47154 * 295.00276 * 5 4 3 9 9 C 1.34702 * 117.00088 * 149.99969 * 8 5 4 10 10 O 1.21461 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.47769 * 119.99980 * 179.97438 * 9 8 5 12 12 C 1.39972 * 120.03170 * 359.72329 * 11 9 8 13 13 C 1.38308 * 120.35097 * 179.76306 * 12 11 9 14 14 C 1.37761 * 120.42226 * 0.51452 * 13 12 11 15 15 C 1.40747 * 120.04808 * 359.74454 * 14 13 12 16 16 C 1.41445 * 120.17908 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99585 * 24.43282 * 16 15 14 18 18 C 1.39932 * 120.00422 * 204.44276 * 16 15 14 19 19 N 1.30834 * 119.99950 * 17.87410 * 18 16 15 20 20 Si 1.86794 * 120.00033 * 197.88173 * 18 16 15 21 21 H 1.48498 * 109.47556 * 89.99448 * 20 18 16 22 22 H 1.48500 * 109.47196 * 209.99813 * 20 18 16 23 23 H 1.48505 * 109.46974 * 329.99349 * 20 18 16 24 24 C 1.39053 * 120.03069 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47065 * 60.00082 * 1 2 3 26 26 H 1.09006 * 109.47320 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47139 * 300.00149 * 1 2 3 28 28 H 1.09005 * 109.47208 * 59.99748 * 3 2 1 29 29 H 1.09002 * 109.46633 * 300.00142 * 3 2 1 30 30 H 1.09005 * 109.47200 * 59.99761 * 4 3 2 31 31 H 1.09002 * 109.47426 * 299.99674 * 4 3 2 32 32 H 1.09000 * 109.47611 * 300.00324 * 7 5 4 33 33 H 1.08995 * 109.47135 * 180.02562 * 7 5 4 34 34 H 1.09007 * 109.47414 * 60.00010 * 7 5 4 35 35 H 1.07998 * 119.82220 * 0.02562 * 12 11 9 36 36 H 1.08010 * 119.78770 * 180.25924 * 13 12 11 37 37 H 1.08002 * 119.97415 * 179.76575 * 14 13 12 38 38 H 0.96999 * 119.99664 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.20230 * 359.95417 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7668 3.1545 0.8414 7 6 5.6779 2.4638 0.1264 8 8 3.8266 3.2590 -1.2412 9 6 3.7224 4.6013 -1.1970 10 8 3.9028 5.1903 -0.1501 11 6 3.3886 5.3572 -2.4220 12 6 3.1862 4.6796 -3.6300 13 6 2.8687 5.3801 -4.7795 14 6 2.7583 6.7530 -4.7517 15 6 2.9635 7.4523 -3.5476 16 6 2.8503 8.8619 -3.5158 17 1 2.2472 9.3719 -4.2525 18 6 3.5197 9.5956 -2.5301 19 7 4.5074 9.0511 -1.8670 20 14 3.0031 11.3523 -2.1610 21 1 1.9626 11.3501 -1.1014 22 1 4.1813 12.1275 -1.6961 23 1 2.4546 11.9760 -3.3920 24 6 3.2814 6.7429 -2.3772 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8574 0.6434 -0.8891 31 1 3.8567 0.6439 0.8909 32 1 5.9266 1.9558 1.0581 33 1 6.1212 3.4595 0.1264 34 1 6.0690 1.8915 -0.7150 35 1 3.2743 3.6038 -3.6636 36 1 2.7103 4.8477 -5.7058 37 1 2.5137 7.2930 -5.6545 38 1 4.9717 9.5599 -1.1840 39 1 3.4407 7.2704 -1.4484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754605382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:00 Heat of formation + Delta-G solvation = -131.124575 kcal Electronic energy + Delta-G solvation = -21251.260212 eV Core-core repulsion = 17930.237220 eV Total energy + Delta-G solvation = -3321.022992 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95613 -38.06921 -37.42768 -36.08566 -33.82990 -33.31621 -30.32540 -29.56640 -29.42482 -26.47935 -25.43736 -23.97579 -22.92832 -21.09183 -20.81517 -19.78258 -17.94534 -16.78658 -16.45171 -15.95288 -15.88347 -15.41835 -15.17705 -14.86284 -14.61787 -13.89149 -13.61741 -13.26460 -13.05374 -12.91630 -12.69364 -12.54119 -11.96518 -11.76360 -11.58773 -11.50998 -11.24761 -11.19841 -11.13842 -10.80099 -10.72589 -10.54560 -10.27257 -10.14164 -9.75204 -9.73484 -9.48211 -9.27099 -7.77187 -7.58592 -6.85673 -4.46707 1.95954 2.75487 3.04674 3.07887 3.11372 3.20559 3.58065 3.61279 3.87896 4.54851 4.84286 4.93521 5.00205 5.18384 5.24684 5.26112 5.38119 5.44448 5.50521 5.52134 5.54555 5.76413 5.81837 6.00388 6.03399 6.13787 6.21689 6.38312 6.63370 6.91100 6.93648 6.99500 7.04362 7.14435 7.28554 7.65770 7.72977 7.88209 8.07654 8.41543 8.54862 8.74183 8.76263 10.09638 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004078 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.749789 B = 6863.993810 C = 7209.691666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.058 3.942 4 C -0.111 4.111 5 C 0.085 3.915 6 H 0.084 0.916 7 C -0.167 4.167 8 O -0.351 6.351 9 C 0.511 3.489 10 O -0.518 6.518 11 C -0.116 4.116 12 C -0.194 4.194 13 C -0.104 4.104 14 C -0.202 4.202 15 C 0.096 3.904 16 C -0.461 4.461 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.786 5.786 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.090 4.090 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.285 0.715 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.679 -11.345 3.745 12.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.019 4.019 4 C -0.149 4.149 5 C 0.030 3.970 6 H 0.102 0.898 7 C -0.224 4.224 8 O -0.269 6.269 9 C 0.358 3.642 10 O -0.408 6.408 11 C -0.117 4.117 12 C -0.214 4.214 13 C -0.122 4.122 14 C -0.222 4.222 15 C 0.093 3.907 16 C -0.489 4.489 17 H 0.101 0.899 18 C -0.146 4.146 19 N -0.411 5.411 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.109 4.109 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.311 -11.300 4.261 12.296 hybrid contribution -0.255 1.037 0.345 1.122 sum -2.566 -10.263 4.606 11.538 Atomic orbital electron populations 1.22730 0.81041 1.02493 1.00225 1.87816 1.19756 1.28264 1.95525 1.22574 0.93811 0.84471 1.01022 1.21607 0.93541 0.95418 1.04287 1.22521 0.95752 0.92060 0.86704 0.89846 1.22153 0.94389 1.03320 1.02527 1.86677 1.81472 1.21858 1.36849 1.21883 0.72614 0.80005 0.89657 1.90746 1.47716 1.69694 1.32605 1.18855 1.09313 0.93458 0.90101 1.20565 1.10316 0.97970 0.92518 1.20513 1.00869 0.94364 0.96446 1.21186 1.10381 0.93531 0.97077 1.17542 0.89640 0.93550 0.89959 1.19586 1.26272 0.91214 1.11877 0.89920 1.25965 0.93049 1.01106 0.94447 1.69783 1.14278 1.38855 1.18174 0.86249 0.79175 0.81174 0.79811 1.19148 1.20204 1.18523 1.21665 0.99431 0.89961 0.99864 0.93832 0.89763 0.94171 0.93403 0.92158 0.89821 0.89388 0.91057 0.91517 0.91497 0.87878 0.88545 0.88350 0.90412 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.39 -5.07 10.70 -35.23 -0.38 -5.44 16 3 C 0.06 0.75 5.84 37.15 0.22 0.96 16 4 C -0.11 -1.36 5.30 -26.73 -0.14 -1.50 16 5 C 0.09 1.26 2.56 -26.73 -0.07 1.19 16 6 H 0.08 1.30 7.16 -51.93 -0.37 0.93 16 7 C -0.17 -2.17 9.55 37.16 0.35 -1.82 16 8 O -0.35 -6.49 8.66 -40.50 -0.35 -6.84 16 9 C 0.51 11.34 7.87 34.63 0.27 11.62 16 10 O -0.52 -12.45 15.59 -19.24 -0.30 -12.75 16 11 C -0.12 -2.78 5.87 -105.05 -0.62 -3.39 16 12 C -0.19 -4.25 9.62 -38.91 -0.37 -4.63 16 13 C -0.10 -2.23 10.01 -39.73 -0.40 -2.62 16 14 C -0.20 -4.74 9.78 -38.81 -0.38 -5.12 16 15 C 0.10 2.49 5.57 -106.87 -0.60 1.89 16 16 C -0.46 -11.89 9.05 -37.73 -0.34 -12.23 16 17 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 18 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 19 N -0.79 -20.46 10.96 55.55 0.61 -19.86 16 20 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 24 C -0.09 -2.36 8.24 -38.42 -0.32 -2.68 16 25 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 2.04 7.59 -52.49 -0.40 1.64 16 36 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 39 H 0.14 3.80 5.74 -52.49 -0.30 3.50 16 LS Contribution 336.14 15.07 5.07 5.07 Total: -1.00 -28.67 336.14 -7.43 -36.09 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.68 Total: 5.47 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -1.36 Total: -15.17 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.61 Total: -19.86 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.03 Total: -25.03 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.67 -7.43 -36.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754605382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.032 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds