Wall clock time and date at job start Mon Mar 30 2020 23:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00257 * 2 1 4 4 C 1.52991 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47149 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47040 * 55.00393 * 5 4 3 7 7 C 1.52996 * 109.47048 * 174.99926 * 5 4 3 8 8 O 1.45195 * 109.47154 * 295.00276 * 5 4 3 9 9 C 1.34702 * 117.00088 * 149.99969 * 8 5 4 10 10 O 1.21461 * 119.99958 * 359.97438 * 9 8 5 11 11 C 1.47769 * 119.99980 * 179.97438 * 9 8 5 12 12 C 1.39972 * 120.03170 * 359.72329 * 11 9 8 13 13 C 1.38308 * 120.35097 * 179.76306 * 12 11 9 14 14 C 1.37761 * 120.42226 * 0.51452 * 13 12 11 15 15 C 1.40747 * 120.04808 * 359.74454 * 14 13 12 16 16 C 1.41445 * 120.17908 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99585 * 24.43282 * 16 15 14 18 18 C 1.39932 * 120.00422 * 204.44276 * 16 15 14 19 19 N 1.30834 * 119.99950 * 17.87410 * 18 16 15 20 20 Si 1.86794 * 120.00033 * 197.88173 * 18 16 15 21 21 H 1.48498 * 109.47556 * 89.99448 * 20 18 16 22 22 H 1.48500 * 109.47196 * 209.99813 * 20 18 16 23 23 H 1.48505 * 109.46974 * 329.99349 * 20 18 16 24 24 C 1.39053 * 120.03069 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47065 * 60.00082 * 1 2 3 26 26 H 1.09006 * 109.47320 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47139 * 300.00149 * 1 2 3 28 28 H 1.09005 * 109.47208 * 59.99748 * 3 2 1 29 29 H 1.09002 * 109.46633 * 300.00142 * 3 2 1 30 30 H 1.09005 * 109.47200 * 59.99761 * 4 3 2 31 31 H 1.09002 * 109.47426 * 299.99674 * 4 3 2 32 32 H 1.09000 * 109.47611 * 300.00324 * 7 5 4 33 33 H 1.08995 * 109.47135 * 180.02562 * 7 5 4 34 34 H 1.09007 * 109.47414 * 60.00010 * 7 5 4 35 35 H 1.07998 * 119.82220 * 0.02562 * 12 11 9 36 36 H 1.08010 * 119.78770 * 180.25924 * 13 12 11 37 37 H 1.08002 * 119.97415 * 179.76575 * 14 13 12 38 38 H 0.96999 * 119.99664 * 179.97438 * 19 18 16 39 39 H 1.07998 * 120.20230 * 359.95417 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 1 3.7668 3.1545 0.8414 7 6 5.6779 2.4638 0.1264 8 8 3.8266 3.2590 -1.2412 9 6 3.7224 4.6013 -1.1970 10 8 3.9028 5.1903 -0.1501 11 6 3.3886 5.3572 -2.4220 12 6 3.1862 4.6796 -3.6300 13 6 2.8687 5.3801 -4.7795 14 6 2.7583 6.7530 -4.7517 15 6 2.9635 7.4523 -3.5476 16 6 2.8503 8.8619 -3.5158 17 1 2.2472 9.3719 -4.2525 18 6 3.5197 9.5956 -2.5301 19 7 4.5074 9.0511 -1.8670 20 14 3.0031 11.3523 -2.1610 21 1 1.9626 11.3501 -1.1014 22 1 4.1813 12.1275 -1.6961 23 1 2.4546 11.9760 -3.3920 24 6 3.2814 6.7429 -2.3772 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8574 0.6434 -0.8891 31 1 3.8567 0.6439 0.8909 32 1 5.9266 1.9558 1.0581 33 1 6.1212 3.4595 0.1264 34 1 6.0690 1.8915 -0.7150 35 1 3.2743 3.6038 -3.6636 36 1 2.7103 4.8477 -5.7058 37 1 2.5137 7.2930 -5.6545 38 1 4.9717 9.5599 -1.1840 39 1 3.4407 7.2704 -1.4484 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754605382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:00 Heat of formation + Delta-G solvation = -146.026812 kcal Electronic energy + Delta-G solvation = -21251.906421 eV Core-core repulsion = 17930.237220 eV Total energy + Delta-G solvation = -3321.669201 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57374 -39.38598 -38.88527 -37.65715 -35.65162 -34.59234 -32.12801 -31.36923 -30.51109 -27.36767 -27.27335 -25.52501 -24.13677 -22.88122 -22.18379 -21.40102 -19.71372 -18.32982 -17.82998 -17.40008 -16.96509 -16.82026 -16.69244 -16.48094 -16.04152 -15.37398 -15.10651 -14.68218 -14.49452 -14.31310 -14.18740 -13.83587 -13.52713 -13.16113 -12.97872 -12.84608 -12.66921 -12.55599 -12.47468 -12.22595 -12.17255 -12.03946 -11.88398 -11.57270 -11.54604 -11.25004 -11.10830 -10.68196 -9.62930 -9.45821 -8.69826 -6.41138 0.12896 0.95584 1.37294 1.45969 1.51576 1.69864 1.80679 2.18417 2.67687 2.71184 3.61726 3.77585 3.82966 3.86645 4.01293 4.20609 4.29058 4.40605 4.45646 4.49802 4.55322 4.62039 4.66941 4.76909 4.81927 4.82964 4.96376 5.00010 5.05604 5.12932 5.13581 5.27307 5.39387 5.45509 5.81058 5.88602 6.00057 6.12862 6.21920 6.51927 6.81790 6.86336 6.88385 8.27676 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004078 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.749789 B = 6863.993810 C = 7209.691666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.057 3.943 4 C -0.101 4.101 5 C 0.077 3.923 6 H 0.072 0.928 7 C -0.163 4.163 8 O -0.345 6.345 9 C 0.516 3.484 10 O -0.546 6.546 11 C -0.130 4.130 12 C -0.182 4.182 13 C -0.099 4.099 14 C -0.205 4.205 15 C 0.067 3.933 16 C -0.495 4.495 17 H 0.088 0.912 18 C 0.031 3.969 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.250 1.250 24 C -0.124 4.124 25 H 0.042 0.958 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.288 0.712 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.077 -13.022 3.153 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.020 4.020 4 C -0.138 4.138 5 C 0.022 3.978 6 H 0.090 0.910 7 C -0.220 4.220 8 O -0.262 6.262 9 C 0.364 3.636 10 O -0.438 6.438 11 C -0.131 4.131 12 C -0.201 4.201 13 C -0.117 4.117 14 C -0.224 4.224 15 C 0.064 3.936 16 C -0.524 4.524 17 H 0.106 0.894 18 C -0.184 4.184 19 N -0.451 5.451 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.173 1.173 24 C -0.144 4.144 25 H 0.061 0.939 26 H 0.124 0.876 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.123 0.877 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.158 0.842 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.715 -13.014 3.648 13.786 hybrid contribution -0.157 1.327 0.499 1.426 sum -2.873 -11.687 4.147 12.730 Atomic orbital electron populations 1.22948 0.79607 1.04075 1.00591 1.87787 1.21380 1.27859 1.95568 1.22531 0.94443 0.84677 1.00300 1.21578 0.92832 0.93505 1.05871 1.22933 0.97354 0.92849 0.84638 0.91015 1.22164 0.92644 1.02345 1.04878 1.86633 1.80872 1.19697 1.39015 1.21640 0.72113 0.81152 0.88733 1.90724 1.48961 1.70643 1.33436 1.19122 1.09018 0.93101 0.91867 1.20943 1.08145 0.99321 0.91697 1.20959 0.99027 0.93703 0.97971 1.21500 1.09437 0.94748 0.96734 1.17897 0.90498 0.94276 0.90897 1.19881 1.27477 0.91740 1.13280 0.89435 1.26857 0.92454 1.05387 0.93732 1.69874 1.15566 1.40693 1.19005 0.85164 0.78775 0.75807 0.79786 1.19062 1.19454 1.17344 1.21474 1.02583 0.91170 0.99128 0.93895 0.87638 0.93413 0.93219 0.93946 0.89275 0.86624 0.87737 0.94210 0.90299 0.85100 0.84186 0.86688 0.90151 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 11.01 113.37 1.25 1.67 16 2 O -0.41 -9.64 10.70 -148.98 -1.59 -11.23 16 3 C 0.06 1.40 5.84 71.98 0.42 1.82 16 4 C -0.10 -2.22 5.30 30.59 0.16 -2.06 16 5 C 0.08 2.18 2.56 30.59 0.08 2.26 16 6 H 0.07 2.23 7.16 -2.39 -0.02 2.22 16 7 C -0.16 -3.99 9.55 71.98 0.69 -3.31 16 8 O -0.34 -12.55 8.66 -56.11 -0.49 -13.03 16 9 C 0.52 23.33 7.87 70.34 0.55 23.89 16 10 O -0.55 -27.31 15.59 19.96 0.31 -27.00 16 11 C -0.13 -6.31 5.87 -20.14 -0.12 -6.43 16 12 C -0.18 -7.66 9.62 22.71 0.22 -7.44 16 13 C -0.10 -3.99 10.01 22.17 0.22 -3.77 16 14 C -0.20 -9.45 9.78 22.77 0.22 -9.22 16 15 C 0.07 3.56 5.57 -21.32 -0.12 3.44 16 16 C -0.49 -26.32 9.05 23.47 0.21 -26.11 16 17 H 0.09 4.37 7.91 -2.91 -0.02 4.35 16 18 C 0.03 1.57 5.14 85.25 0.44 2.01 16 19 N -0.83 -45.02 10.96 21.82 0.24 -44.78 16 20 Si 0.98 38.63 29.59 68.60 2.03 40.66 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 24 C -0.12 -6.80 8.24 23.02 0.19 -6.61 16 25 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.04 1.17 7.82 -2.39 -0.02 1.15 16 30 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.13 4.76 7.59 -2.91 -0.02 4.74 16 36 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 37 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 39 H 0.11 6.35 5.74 -2.91 -0.02 6.34 16 Total: -1.00 -64.54 336.14 5.95 -58.59 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 1.03 Total: 26.65 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 4.42 Total: -29.86 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.24 Total: -44.78 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -1.77 Total: -51.27 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Total: -64.54 5.95 -58.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754605382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.433 kcal (2) G-P(sol) polarization free energy of solvation -64.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds