Wall clock time and date at job start Mon Mar 30 2020 23:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00265 * 2 1 4 4 H 1.48497 * 109.47388 * 270.00363 * 3 2 1 5 5 H 1.48501 * 109.46754 * 30.00671 * 3 2 1 6 6 H 1.48504 * 109.46905 * 150.00411 * 3 2 1 7 7 C 1.37884 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46942 * 180.02562 * 10 9 7 12 12 O 1.45205 * 109.47112 * 180.02562 * 11 10 9 13 13 C 1.34230 * 116.99893 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00388 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99593 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.43304 * 60.10135 * 15 13 12 17 17 C 1.53034 * 109.42858 * 179.97438 * 15 13 12 18 18 C 1.53376 * 109.74154 * 191.82173 * 17 15 13 19 19 C 1.50944 * 108.20502 * 309.35898 * 18 17 15 20 20 N 1.30132 * 128.28481 * 196.74079 * 19 18 17 21 21 N 1.40315 * 108.12102 * 179.71735 * 20 19 18 22 22 H 0.97001 * 125.99875 * 180.02562 * 21 20 19 23 23 C 1.35190 * 107.99322 * 0.04355 * 21 20 19 24 24 C 1.34567 * 107.62472 * 0.03701 * 23 21 20 25 25 C 1.50882 * 128.33212 * 179.73368 * 24 23 21 26 26 H 0.97001 * 119.99794 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46971 * 60.00916 * 9 7 2 28 28 H 1.09004 * 109.47331 * 300.00219 * 9 7 2 29 29 H 1.08997 * 109.46952 * 60.00383 * 10 9 7 30 30 H 1.09004 * 109.46847 * 299.99994 * 10 9 7 31 31 H 1.08996 * 109.47669 * 59.99841 * 11 10 9 32 32 H 1.09004 * 109.47042 * 299.99505 * 11 10 9 33 33 H 1.08999 * 109.42360 * 71.73753 * 17 15 13 34 34 H 1.08998 * 109.37802 * 311.87760 * 17 15 13 35 35 H 1.08999 * 109.71284 * 189.68459 * 18 17 15 36 36 H 1.08997 * 109.71530 * 69.04157 * 18 17 15 37 37 H 1.08004 * 126.19040 * 180.02562 * 23 21 20 38 38 H 1.09000 * 109.71830 * 316.31778 * 25 24 23 39 39 H 1.09006 * 109.71713 * 76.96263 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9104 -7.3312 -0.0005 14 8 0.7126 -7.4895 -0.0004 15 6 2.8284 -8.5263 -0.0004 16 1 3.4557 -8.5017 0.8906 17 6 1.9940 -9.8091 0.0003 18 6 2.8961 -11.0137 0.2961 19 6 4.0821 -10.9548 -0.6357 20 7 4.9207 -11.9040 -0.9345 21 7 5.8547 -11.3900 -1.8467 22 1 6.5952 -11.8776 -2.2403 23 6 5.5416 -10.0958 -2.0804 24 6 4.4536 -9.8007 -1.3455 25 6 3.7167 -8.4875 -1.2503 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6245 -2.5571 0.8897 29 1 2.8717 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8906 31 1 0.8537 -5.0446 -0.8913 32 1 0.8532 -5.0451 0.8887 33 1 1.5259 -9.9376 -0.9757 34 1 1.2217 -9.7377 0.7662 35 1 2.3424 -11.9376 0.1285 36 1 3.2382 -10.9718 1.3301 37 1 6.0693 -9.4207 -2.7379 38 1 4.4322 -7.6694 -1.1678 39 1 3.0981 -8.3478 -2.1370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757805468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:06 Heat of formation + Delta-G solvation = -42.979912 kcal Electronic energy + Delta-G solvation = -20678.382847 eV Core-core repulsion = 17393.474845 eV Total energy + Delta-G solvation = -3284.908001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.77474 -40.28634 -37.10140 -35.99136 -33.98090 -32.59775 -31.66613 -30.78494 -29.25476 -27.04644 -25.01663 -23.79124 -22.57887 -21.32355 -20.49288 -20.18122 -19.06154 -17.96276 -17.36876 -16.58359 -16.23130 -15.92820 -15.52806 -14.80707 -14.47773 -14.15799 -14.09354 -13.62085 -13.44202 -13.10480 -12.86353 -12.32845 -12.27681 -12.00552 -11.90569 -11.86589 -11.27588 -11.14849 -10.96670 -10.65573 -10.62812 -10.58934 -10.35517 -10.22443 -9.70607 -9.67088 -9.48206 -9.15747 -8.71272 -8.38580 -6.03368 -4.06328 1.61361 2.35873 2.45020 2.56259 2.91078 3.30974 3.37226 3.40698 4.11063 4.42908 4.46752 4.54596 4.67146 4.82783 4.95914 5.10347 5.19814 5.27926 5.32642 5.41635 5.48144 5.60200 5.65107 5.66708 5.71084 5.86149 5.91975 6.02996 6.04112 6.36222 6.54324 6.55603 6.87514 6.98823 7.00244 7.38332 7.60898 7.72138 7.94865 7.97835 8.36446 9.00062 9.57925 11.08117 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034314 B = 0.002732 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.805593 B =10245.776327 C =10906.178028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.067 3.933 12 O -0.356 6.356 13 C 0.461 3.539 14 O -0.511 6.511 15 C -0.077 4.077 16 H 0.110 0.890 17 C -0.102 4.102 18 C -0.038 4.038 19 C 0.083 3.917 20 N -0.291 5.291 21 N -0.486 5.486 22 H 0.439 0.561 23 C 0.066 3.934 24 C -0.234 4.234 25 C -0.031 4.031 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.088 0.912 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.266 -22.872 -2.769 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.006 4.006 12 O -0.273 6.273 13 C 0.304 3.696 14 O -0.399 6.399 15 C -0.097 4.097 16 H 0.128 0.872 17 C -0.140 4.140 18 C -0.077 4.077 19 C -0.086 4.086 20 N -0.113 5.113 21 N -0.194 5.194 22 H 0.283 0.717 23 C -0.080 4.080 24 C -0.245 4.245 25 C -0.069 4.069 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.196 0.804 38 H 0.106 0.894 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.072 -23.950 -2.579 26.109 hybrid contribution 0.553 1.636 -0.468 1.789 sum 10.625 -22.314 -3.047 24.902 Atomic orbital electron populations 1.69965 1.06091 1.26755 1.50566 1.25034 0.94875 0.99361 0.95221 0.86550 0.79818 0.83258 0.78126 1.20623 1.21199 1.19808 1.21177 0.93114 0.90698 1.50955 0.92436 1.19053 0.93860 0.90777 0.97666 1.21754 0.99893 0.91047 1.01922 1.23495 0.91248 0.83710 1.02111 1.86501 1.42605 1.15175 1.82978 1.23543 0.88492 0.85038 0.72556 1.90654 1.17007 1.86875 1.45405 1.21069 0.96335 0.90452 1.01812 0.87214 1.21486 0.97202 0.91016 1.04294 1.20154 0.91068 0.99398 0.97052 1.22410 0.96738 0.91173 0.98288 1.77005 1.02816 1.22131 1.09338 1.46323 1.26502 1.09282 1.37321 0.71722 1.22080 0.97851 0.87213 1.00847 1.20001 1.01022 0.97519 1.05972 1.19908 0.97059 0.93668 0.96260 0.92893 0.96251 0.96250 0.92168 0.92173 0.91552 0.91571 0.90553 0.89500 0.89321 0.89402 0.80434 0.89396 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.37 16 11 C 0.07 1.23 5.47 37.16 0.20 1.43 16 12 O -0.36 -5.74 10.14 -39.26 -0.40 -6.14 16 13 C 0.46 6.68 7.24 36.00 0.26 6.94 16 14 O -0.51 -8.79 15.51 -18.75 -0.29 -9.08 16 15 C -0.08 -0.81 2.57 -91.56 -0.24 -1.04 16 16 H 0.11 1.02 8.10 -51.93 -0.42 0.60 16 17 C -0.10 -0.96 4.65 -26.52 -0.12 -1.08 16 18 C -0.04 -0.31 6.31 -27.57 -0.17 -0.48 16 19 C 0.08 0.84 7.10 -82.34 -0.58 0.25 16 20 N -0.29 -3.12 12.68 33.75 0.43 -2.69 16 21 N -0.49 -3.77 7.37 30.35 0.22 -3.55 16 22 H 0.44 1.94 8.96 -182.43 -1.64 0.31 16 23 C 0.07 0.49 11.95 -17.37 -0.21 0.29 16 24 C -0.23 -2.20 5.89 -104.98 -0.62 -2.82 16 25 C -0.03 -0.29 5.50 -27.59 -0.15 -0.44 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 32 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.09 0.83 7.68 -51.93 -0.40 0.43 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.18 0.74 8.06 -52.48 -0.42 0.31 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 329.94 15.07 4.97 4.97 Total: -1.00 -33.63 329.94 -8.74 -42.37 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -7.07 Total: -3.98 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -2.33 Total: -12.29 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 1.39 Total: -32.30 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.69 Total: -15.22 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.63 -8.74 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757805468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.609 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds