Wall clock time and date at job start Mon Mar 30 2020 23:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00265 * 2 1 4 4 H 1.48497 * 109.47388 * 270.00363 * 3 2 1 5 5 H 1.48501 * 109.46754 * 30.00671 * 3 2 1 6 6 H 1.48504 * 109.46905 * 150.00411 * 3 2 1 7 7 C 1.37884 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99798 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00005 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46969 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46942 * 180.02562 * 10 9 7 12 12 O 1.45205 * 109.47112 * 180.02562 * 11 10 9 13 13 C 1.34230 * 116.99893 * 179.97438 * 12 11 10 14 14 O 1.20825 * 120.00388 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99593 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.43304 * 60.10135 * 15 13 12 17 17 C 1.53034 * 109.42858 * 179.97438 * 15 13 12 18 18 C 1.53376 * 109.74154 * 191.82173 * 17 15 13 19 19 C 1.50944 * 108.20502 * 309.35898 * 18 17 15 20 20 N 1.30132 * 128.28481 * 196.74079 * 19 18 17 21 21 N 1.40315 * 108.12102 * 179.71735 * 20 19 18 22 22 H 0.97001 * 125.99875 * 180.02562 * 21 20 19 23 23 C 1.35190 * 107.99322 * 0.04355 * 21 20 19 24 24 C 1.34567 * 107.62472 * 0.03701 * 23 21 20 25 25 C 1.50882 * 128.33212 * 179.73368 * 24 23 21 26 26 H 0.97001 * 119.99794 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46971 * 60.00916 * 9 7 2 28 28 H 1.09004 * 109.47331 * 300.00219 * 9 7 2 29 29 H 1.08997 * 109.46952 * 60.00383 * 10 9 7 30 30 H 1.09004 * 109.46847 * 299.99994 * 10 9 7 31 31 H 1.08996 * 109.47669 * 59.99841 * 11 10 9 32 32 H 1.09004 * 109.47042 * 299.99505 * 11 10 9 33 33 H 1.08999 * 109.42360 * 71.73753 * 17 15 13 34 34 H 1.08998 * 109.37802 * 311.87760 * 17 15 13 35 35 H 1.08999 * 109.71284 * 189.68459 * 18 17 15 36 36 H 1.08997 * 109.71530 * 69.04157 * 18 17 15 37 37 H 1.08004 * 126.19040 * 180.02562 * 23 21 20 38 38 H 1.09000 * 109.71830 * 316.31778 * 25 24 23 39 39 H 1.09006 * 109.71713 * 76.96263 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9104 -7.3312 -0.0005 14 8 0.7126 -7.4895 -0.0004 15 6 2.8284 -8.5263 -0.0004 16 1 3.4557 -8.5017 0.8906 17 6 1.9940 -9.8091 0.0003 18 6 2.8961 -11.0137 0.2961 19 6 4.0821 -10.9548 -0.6357 20 7 4.9207 -11.9040 -0.9345 21 7 5.8547 -11.3900 -1.8467 22 1 6.5952 -11.8776 -2.2403 23 6 5.5416 -10.0958 -2.0804 24 6 4.4536 -9.8007 -1.3455 25 6 3.7167 -8.4875 -1.2503 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8904 28 1 0.6245 -2.5571 0.8897 29 1 2.8717 -3.6044 0.8895 30 1 2.8718 -3.6044 -0.8906 31 1 0.8537 -5.0446 -0.8913 32 1 0.8532 -5.0451 0.8887 33 1 1.5259 -9.9376 -0.9757 34 1 1.2217 -9.7377 0.7662 35 1 2.3424 -11.9376 0.1285 36 1 3.2382 -10.9718 1.3301 37 1 6.0693 -9.4207 -2.7379 38 1 4.4322 -7.6694 -1.1678 39 1 3.0981 -8.3478 -2.1370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757805468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:05 Heat of formation + Delta-G solvation = -62.951213 kcal Electronic energy + Delta-G solvation = -20679.248867 eV Core-core repulsion = 17393.474845 eV Total energy + Delta-G solvation = -3285.774022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46045 -41.48000 -38.20234 -37.06538 -35.90782 -33.71485 -33.20078 -31.48620 -30.09909 -28.83145 -25.91583 -25.25216 -23.81008 -22.12859 -21.98842 -21.36560 -19.79696 -18.78282 -18.56164 -18.35881 -17.53061 -17.27667 -16.48044 -16.29641 -15.71721 -15.35094 -14.92177 -14.74288 -14.36982 -14.12738 -13.97056 -13.77452 -13.67888 -13.53392 -12.93371 -12.82765 -12.76837 -12.49078 -12.37783 -12.04834 -12.03276 -11.89745 -11.69795 -11.37446 -11.36062 -11.28505 -11.11014 -10.55736 -10.32887 -9.36225 -8.20294 -6.31667 0.99636 1.19069 1.42792 1.44293 1.55354 1.69224 1.76848 2.03600 2.42871 3.13732 3.35359 3.67901 3.77998 3.89124 4.04220 4.06204 4.11382 4.26525 4.34814 4.45299 4.50447 4.61853 4.73329 4.79369 4.83669 4.90387 4.99454 5.04704 5.11228 5.14381 5.21878 5.28227 5.46653 5.57624 5.66697 5.69981 5.82369 6.21136 6.50271 6.74307 6.74735 6.84892 7.37880 8.91993 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034314 B = 0.002732 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.805593 B =10245.776327 C =10906.178028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.354 6.354 13 C 0.462 3.538 14 O -0.540 6.540 15 C -0.070 4.070 16 H 0.127 0.873 17 C -0.096 4.096 18 C -0.033 4.033 19 C 0.070 3.930 20 N -0.325 5.325 21 N -0.479 5.479 22 H 0.452 0.548 23 C 0.081 3.919 24 C -0.258 4.258 25 C -0.024 4.024 26 H 0.264 0.736 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.214 0.786 38 H 0.094 0.906 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.520 -23.146 -3.073 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.003 3.997 12 O -0.270 6.270 13 C 0.306 3.694 14 O -0.430 6.430 15 C -0.089 4.089 16 H 0.145 0.855 17 C -0.134 4.134 18 C -0.071 4.071 19 C -0.098 4.098 20 N -0.148 5.148 21 N -0.188 5.188 22 H 0.299 0.701 23 C -0.066 4.066 24 C -0.270 4.270 25 C -0.062 4.062 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.230 0.770 38 H 0.113 0.887 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.354 -24.261 -2.886 27.378 hybrid contribution -0.143 1.647 -0.406 1.702 sum 12.211 -22.615 -3.292 25.911 Atomic orbital electron populations 1.70103 1.07910 1.27901 1.51564 1.26017 0.95776 1.03539 0.94652 0.85394 0.78669 0.78141 0.78531 1.19707 1.20923 1.18483 1.21637 0.93777 0.91861 1.50705 0.91592 1.18941 0.94312 0.92578 0.95386 1.21444 0.98658 0.90353 1.02604 1.23112 0.91026 0.83861 1.01687 1.86494 1.41821 1.15434 1.83256 1.24401 0.88774 0.85066 0.71119 1.90647 1.18569 1.87020 1.46781 1.21193 0.95903 0.88528 1.03232 0.85494 1.21430 0.97203 0.91054 1.03719 1.20151 0.90510 0.98964 0.97512 1.22676 0.97047 0.91413 0.98617 1.76943 1.03930 1.23063 1.10827 1.46384 1.26343 1.09573 1.36540 0.70122 1.22615 0.96926 0.87212 0.99861 1.20081 1.02262 0.97223 1.07423 1.19831 0.96850 0.94250 0.95283 0.92713 0.98539 0.98610 0.91492 0.91307 0.92020 0.92118 0.91442 0.89840 0.88519 0.88132 0.76993 0.88735 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.79 5.53 30.59 0.17 -3.62 16 11 C 0.08 2.80 5.47 71.98 0.39 3.19 16 12 O -0.35 -11.06 10.14 -51.42 -0.52 -11.58 16 13 C 0.46 13.07 7.24 71.24 0.52 13.58 16 14 O -0.54 -18.62 15.51 21.97 0.34 -18.28 16 15 C -0.07 -1.36 2.57 -11.40 -0.03 -1.39 16 16 H 0.13 2.09 8.10 -2.39 -0.02 2.07 16 17 C -0.10 -1.72 4.65 30.73 0.14 -1.57 16 18 C -0.03 -0.49 6.31 30.05 0.19 -0.30 16 19 C 0.07 1.33 7.10 43.44 0.31 1.63 16 20 N -0.32 -6.50 12.68 -47.13 -0.60 -7.10 16 21 N -0.48 -6.40 7.37 -57.89 -0.43 -6.83 16 22 H 0.45 3.01 8.96 -213.18 -1.91 1.10 16 23 C 0.08 0.99 11.95 83.33 1.00 1.98 16 24 C -0.26 -4.36 5.89 -20.10 -0.12 -4.48 16 25 C -0.02 -0.41 5.50 30.03 0.17 -0.25 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.06 2.30 8.13 -2.39 -0.02 2.28 16 32 H 0.06 2.27 8.13 -2.39 -0.02 2.25 16 33 H 0.07 1.32 8.10 -2.39 -0.02 1.30 16 34 H 0.08 1.55 7.68 -2.39 -0.02 1.53 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.21 0.94 8.06 -2.91 -0.02 0.91 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.07 1.29 8.12 -2.38 -0.02 1.27 16 Total: -1.00 -72.22 329.94 3.82 -68.40 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -0.86 Total: 5.80 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 3.58 Total: -19.62 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -0.74 Total: -70.45 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.18 Total: -29.85 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -72.22 3.82 -68.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757805468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.445 kcal (2) G-P(sol) polarization free energy of solvation -72.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds