Wall clock time and date at job start Mon Mar 30 2020 23:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34235 * 117.00385 * 179.97438 * 12 11 10 14 14 O 1.20824 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00281 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.42917 * 299.89927 * 15 13 12 17 17 C 1.53025 * 109.43067 * 179.97438 * 15 13 12 18 18 C 1.53371 * 109.74744 * 168.19616 * 17 15 13 19 19 C 1.50948 * 108.20731 * 50.65004 * 18 17 15 20 20 N 1.30125 * 128.28574 * 163.36327 * 19 18 17 21 21 N 1.40318 * 108.12117 * 180.12283 * 20 19 18 22 22 H 0.97005 * 125.99981 * 179.97438 * 21 20 19 23 23 C 1.35196 * 107.99167 * 359.96510 * 21 20 19 24 24 C 1.34569 * 107.61877 * 359.95649 * 23 21 20 25 25 C 1.50885 * 128.32635 * 180.30181 * 24 23 21 26 26 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09003 * 109.42843 * 288.28062 * 17 15 13 34 34 H 1.09004 * 109.42518 * 48.10811 * 17 15 13 35 35 H 1.09005 * 109.71400 * 170.32913 * 18 17 15 36 36 H 1.09003 * 109.71512 * 290.97085 * 18 17 15 37 37 H 1.08004 * 126.18784 * 179.97438 * 23 21 20 38 38 H 1.09005 * 109.71579 * 43.56506 * 25 24 23 39 39 H 1.09001 * 109.71870 * 282.91457 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 8 6.0354 -4.0056 -0.0027 13 6 7.3662 -4.1815 -0.0043 14 8 8.1022 -3.2234 -0.0049 15 6 7.9421 -5.5741 -0.0055 16 1 7.6082 -6.1053 0.8858 17 6 9.4702 -5.4929 -0.0079 18 6 10.0631 -6.8765 0.2861 19 6 9.4172 -7.8739 -0.6448 20 7 9.8185 -9.0752 -0.9434 21 7 8.9031 -9.6279 -1.8519 22 1 8.9535 -10.5135 -2.2446 23 6 7.9385 -8.7094 -2.0837 24 6 8.2299 -7.6189 -1.3511 25 6 7.4617 -6.3239 -1.2545 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6584 -3.1503 0.8892 30 1 3.6578 -3.1506 -0.8907 31 1 5.9141 -2.1231 -0.8927 32 1 5.9156 -2.1225 0.8872 33 1 9.8136 -5.1515 -0.9845 34 1 9.7970 -4.7884 0.7569 35 1 11.1397 -6.8588 0.1166 36 1 9.8576 -7.1523 1.3205 37 1 7.0878 -8.8294 -2.7382 38 1 6.3955 -6.5342 -1.1698 39 1 7.6485 -5.7184 -2.1414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000757805470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:08 Heat of formation + Delta-G solvation = -39.154038 kcal Electronic energy + Delta-G solvation = -20728.541563 eV Core-core repulsion = 17443.799464 eV Total energy + Delta-G solvation = -3284.742099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79921 -40.36637 -37.17032 -36.06270 -34.07415 -32.62212 -31.81976 -30.81499 -29.32362 -27.52098 -25.05863 -23.76650 -22.46728 -21.34629 -20.56721 -20.11104 -19.09515 -17.98652 -17.42958 -16.89605 -16.34410 -16.12776 -15.56559 -14.85719 -14.33561 -14.17905 -14.10593 -13.68542 -13.44342 -13.14506 -12.88694 -12.72800 -12.44263 -12.14813 -12.01888 -11.92024 -11.33455 -11.18643 -11.04779 -10.93516 -10.64696 -10.46187 -10.40041 -9.96929 -9.78434 -9.71235 -9.69136 -9.24878 -8.73445 -8.56988 -6.07288 -4.06253 1.59559 2.28559 2.42593 2.54280 2.82729 3.29837 3.37538 3.41040 4.07874 4.42872 4.43678 4.50405 4.62096 4.78977 4.91783 5.06623 5.15878 5.24849 5.26183 5.37866 5.44621 5.47392 5.51319 5.62720 5.67638 5.82453 5.87889 5.89353 5.98926 6.32915 6.38781 6.39798 6.68905 6.82109 6.97060 7.21644 7.32829 7.36367 7.72530 7.90313 8.49601 8.97084 9.54376 11.05903 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036654 B = 0.002838 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.724736 B = 9865.372516 C =10451.930271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.065 3.935 12 O -0.354 6.354 13 C 0.462 3.538 14 O -0.512 6.512 15 C -0.077 4.077 16 H 0.111 0.889 17 C -0.102 4.102 18 C -0.038 4.038 19 C 0.082 3.918 20 N -0.290 5.290 21 N -0.486 5.486 22 H 0.439 0.561 23 C 0.067 3.933 24 C -0.234 4.234 25 C -0.031 4.031 26 H 0.264 0.736 27 H 0.019 0.981 28 H 0.014 0.986 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.179 0.821 38 H 0.088 0.912 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.455 -17.898 -2.767 26.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.008 4.008 12 O -0.270 6.270 13 C 0.305 3.695 14 O -0.400 6.400 15 C -0.097 4.097 16 H 0.129 0.871 17 C -0.140 4.140 18 C -0.077 4.077 19 C -0.086 4.086 20 N -0.113 5.113 21 N -0.194 5.194 22 H 0.283 0.717 23 C -0.079 4.079 24 C -0.246 4.246 25 C -0.069 4.069 26 H 0.073 0.927 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.196 0.804 38 H 0.107 0.893 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.352 -18.344 -2.580 27.520 hybrid contribution -0.362 1.124 -0.477 1.273 sum 19.990 -17.220 -3.057 26.561 Atomic orbital electron populations 1.69908 1.06292 1.26974 1.50889 1.25018 0.94755 0.99186 0.94470 0.86784 0.80393 0.83575 0.78596 1.20212 1.21298 1.18951 1.21060 0.89067 0.94649 1.51157 0.90801 1.19522 0.97506 0.91155 0.96656 1.21551 0.88826 1.00711 1.02795 1.23486 0.97032 0.78245 1.02043 1.86505 1.23405 1.34105 1.83015 1.23573 0.81356 0.92144 0.72448 1.90650 1.60729 1.43160 1.45479 1.21072 0.96397 0.90273 1.01914 0.87138 1.21482 0.92014 0.96207 1.04279 1.20152 0.99891 0.90542 0.97084 1.22398 0.94897 0.93036 0.98304 1.77004 1.14256 1.10567 1.09443 1.46329 1.19754 1.15826 1.37491 0.71696 1.22090 0.95125 0.89889 1.00816 1.19990 1.00173 0.98298 1.06119 1.19911 0.99432 0.91363 0.96196 0.92651 0.96301 0.96731 0.91530 0.91557 0.91581 0.91577 0.90565 0.89528 0.89317 0.89387 0.80402 0.89340 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 8 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -1.97 5.53 -26.73 -0.15 -2.12 16 11 C 0.06 1.11 5.47 37.16 0.20 1.31 16 12 O -0.35 -5.44 10.14 -39.27 -0.40 -5.83 16 13 C 0.46 6.38 7.24 36.00 0.26 6.64 16 14 O -0.51 -8.39 15.51 -18.75 -0.29 -8.68 16 15 C -0.08 -0.77 2.57 -91.56 -0.24 -1.01 16 16 H 0.11 0.98 8.10 -51.93 -0.42 0.56 16 17 C -0.10 -0.91 4.65 -26.53 -0.12 -1.04 16 18 C -0.04 -0.30 6.31 -27.57 -0.17 -0.47 16 19 C 0.08 0.82 7.10 -82.35 -0.58 0.23 16 20 N -0.29 -3.07 12.68 33.75 0.43 -2.64 16 21 N -0.49 -3.70 7.37 30.35 0.22 -3.48 16 22 H 0.44 1.89 8.96 -182.43 -1.64 0.25 16 23 C 0.07 0.49 11.95 -17.37 -0.21 0.28 16 24 C -0.23 -2.15 5.89 -104.98 -0.62 -2.77 16 25 C -0.03 -0.28 5.50 -27.59 -0.15 -0.43 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 28 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 32 H 0.07 1.12 8.13 -51.93 -0.42 0.70 16 33 H 0.08 0.73 8.10 -51.93 -0.42 0.30 16 34 H 0.09 0.79 7.68 -51.93 -0.40 0.39 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.18 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.71 8.12 -51.93 -0.42 0.29 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -34.02 326.34 -8.37 -42.39 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -7.03 Total: -3.75 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: -2.32 Total: -12.96 kcal Atomic # 7 Polarization: -34.43 SS G_CDS: 1.43 Total: -33.00 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.69 Total: -14.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.02 -8.37 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757805470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.234 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds