Wall clock time and date at job start Mon Mar 30 2020 23:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34235 * 117.00385 * 179.97438 * 12 11 10 14 14 O 1.20824 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00281 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.42917 * 299.89927 * 15 13 12 17 17 C 1.53025 * 109.43067 * 179.97438 * 15 13 12 18 18 C 1.53371 * 109.74744 * 168.19616 * 17 15 13 19 19 C 1.50948 * 108.20731 * 50.65004 * 18 17 15 20 20 N 1.30125 * 128.28574 * 163.36327 * 19 18 17 21 21 N 1.40318 * 108.12117 * 180.12283 * 20 19 18 22 22 H 0.97005 * 125.99981 * 179.97438 * 21 20 19 23 23 C 1.35196 * 107.99167 * 359.96510 * 21 20 19 24 24 C 1.34569 * 107.61877 * 359.95649 * 23 21 20 25 25 C 1.50885 * 128.32635 * 180.30181 * 24 23 21 26 26 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.09003 * 109.42843 * 288.28062 * 17 15 13 34 34 H 1.09004 * 109.42518 * 48.10811 * 17 15 13 35 35 H 1.09005 * 109.71400 * 170.32913 * 18 17 15 36 36 H 1.09003 * 109.71512 * 290.97085 * 18 17 15 37 37 H 1.08004 * 126.18784 * 179.97438 * 23 21 20 38 38 H 1.09005 * 109.71579 * 43.56506 * 25 24 23 39 39 H 1.09001 * 109.71870 * 282.91457 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 8 6.0354 -4.0056 -0.0027 13 6 7.3662 -4.1815 -0.0043 14 8 8.1022 -3.2234 -0.0049 15 6 7.9421 -5.5741 -0.0055 16 1 7.6082 -6.1053 0.8858 17 6 9.4702 -5.4929 -0.0079 18 6 10.0631 -6.8765 0.2861 19 6 9.4172 -7.8739 -0.6448 20 7 9.8185 -9.0752 -0.9434 21 7 8.9031 -9.6279 -1.8519 22 1 8.9535 -10.5135 -2.2446 23 6 7.9385 -8.7094 -2.0837 24 6 8.2299 -7.6189 -1.3511 25 6 7.4617 -6.3239 -1.2545 26 1 -0.4850 0.8401 0.0004 27 1 3.8752 -0.6804 0.8888 28 1 3.8745 -0.6801 -0.8911 29 1 3.6584 -3.1503 0.8892 30 1 3.6578 -3.1506 -0.8907 31 1 5.9141 -2.1231 -0.8927 32 1 5.9156 -2.1225 0.8872 33 1 9.8136 -5.1515 -0.9845 34 1 9.7970 -4.7884 0.7569 35 1 11.1397 -6.8588 0.1166 36 1 9.8576 -7.1523 1.3205 37 1 7.0878 -8.8294 -2.7382 38 1 6.3955 -6.5342 -1.1698 39 1 7.6485 -5.7184 -2.1414 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000757805470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:08 Heat of formation + Delta-G solvation = -60.121415 kcal Electronic energy + Delta-G solvation = -20729.450776 eV Core-core repulsion = 17443.799464 eV Total energy + Delta-G solvation = -3285.651313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46270 -41.47818 -38.20661 -37.06122 -35.90421 -33.87563 -33.23431 -31.48968 -30.18795 -29.17002 -25.88102 -25.08236 -23.69955 -22.05354 -21.98776 -21.34058 -19.79914 -18.99775 -18.66550 -18.45496 -17.54080 -17.29935 -16.30572 -16.27693 -15.74670 -15.35255 -14.89782 -14.81326 -14.64260 -14.28729 -13.99824 -13.82172 -13.70819 -13.55048 -12.94867 -12.84752 -12.77210 -12.55275 -12.15609 -12.02107 -11.93187 -11.88022 -11.74211 -11.39540 -11.36748 -11.31798 -11.17182 -10.76184 -10.33396 -9.36658 -8.28964 -6.33711 0.99199 1.19425 1.38071 1.39683 1.51374 1.69638 1.76648 2.03115 2.36944 3.06380 3.35532 3.67625 3.78160 3.88998 4.04599 4.06347 4.08215 4.26370 4.35021 4.42668 4.50025 4.61211 4.72027 4.77658 4.78983 4.81881 4.97207 4.99371 5.04614 5.14044 5.21490 5.28260 5.38926 5.51786 5.57362 5.64875 5.70048 6.27460 6.49606 6.72591 6.74330 6.76932 7.30858 8.87590 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036654 B = 0.002838 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.724736 B = 9865.372516 C =10451.930271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.036 0.964 9 C -0.010 4.010 10 C -0.092 4.092 11 C 0.074 3.926 12 O -0.356 6.356 13 C 0.464 3.536 14 O -0.538 6.538 15 C -0.071 4.071 16 H 0.126 0.874 17 C -0.095 4.095 18 C -0.033 4.033 19 C 0.071 3.929 20 N -0.325 5.325 21 N -0.479 5.479 22 H 0.452 0.548 23 C 0.080 3.920 24 C -0.259 4.259 25 C -0.024 4.024 26 H 0.267 0.733 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.213 0.787 38 H 0.092 0.908 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.129 -18.165 -3.049 28.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.054 0.946 9 C -0.048 4.048 10 C -0.130 4.130 11 C 0.000 4.000 12 O -0.272 6.272 13 C 0.308 3.692 14 O -0.428 6.428 15 C -0.090 4.090 16 H 0.144 0.856 17 C -0.133 4.133 18 C -0.072 4.072 19 C -0.097 4.097 20 N -0.148 5.148 21 N -0.189 5.189 22 H 0.299 0.701 23 C -0.067 4.067 24 C -0.270 4.270 25 C -0.062 4.062 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.229 0.771 38 H 0.111 0.889 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.052 -18.652 -2.865 29.024 hybrid contribution -0.932 1.072 -0.420 1.481 sum 21.120 -17.581 -3.285 27.676 Atomic orbital electron populations 1.70060 1.08288 1.28223 1.52500 1.26003 0.95626 1.03516 0.94085 0.85671 0.79545 0.78246 0.79292 1.19074 1.20996 1.16920 1.21416 0.91746 0.93338 1.50577 0.94568 1.19455 0.94258 0.93898 0.97140 1.21309 0.90841 0.98204 1.02602 1.23159 0.95085 0.79357 1.02393 1.86501 1.24610 1.32863 1.83276 1.24314 0.80374 0.93329 0.71140 1.90641 1.60995 1.44365 1.46759 1.21185 0.96796 0.87882 1.03117 0.85640 1.21422 0.91238 0.96864 1.03791 1.20163 1.00172 0.89388 0.97472 1.22687 0.95275 0.93173 0.98606 1.76941 1.15728 1.11191 1.10929 1.46391 1.19238 1.16494 1.36758 0.70144 1.22620 0.95274 0.88916 0.99904 1.20091 1.00513 0.98923 1.07478 1.19835 0.99676 0.91325 0.95411 0.92429 0.95730 0.95760 0.91896 0.91715 0.91182 0.91324 0.91368 0.89701 0.88511 0.88182 0.77082 0.88905 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.95 43.87 27.47 68.60 1.88 45.75 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.25 -10.51 6.54 99.48 0.65 -9.86 16 7 C -0.53 -30.46 9.66 25.60 0.25 -30.21 16 8 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.51 5.53 30.59 0.17 -3.34 16 11 C 0.07 2.39 5.47 71.98 0.39 2.78 16 12 O -0.36 -10.39 10.14 -51.47 -0.52 -10.91 16 13 C 0.46 12.15 7.24 71.23 0.52 12.67 16 14 O -0.54 -16.99 15.51 21.97 0.34 -16.65 16 15 C -0.07 -1.30 2.57 -11.40 -0.03 -1.33 16 16 H 0.13 1.96 8.10 -2.39 -0.02 1.94 16 17 C -0.10 -1.58 4.65 30.73 0.14 -1.44 16 18 C -0.03 -0.48 6.31 30.05 0.19 -0.29 16 19 C 0.07 1.30 7.10 43.44 0.31 1.60 16 20 N -0.32 -6.42 12.68 -47.14 -0.60 -7.02 16 21 N -0.48 -6.37 7.37 -57.88 -0.43 -6.79 16 22 H 0.45 3.01 8.96 -213.17 -1.91 1.10 16 23 C 0.08 0.97 11.95 83.33 1.00 1.96 16 24 C -0.26 -4.27 5.89 -20.10 -0.12 -4.38 16 25 C -0.02 -0.40 5.50 30.04 0.17 -0.24 16 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.02 1.10 7.20 -2.39 -0.02 1.08 16 28 H 0.02 1.06 7.57 -2.39 -0.02 1.05 16 29 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.07 2.23 8.13 -2.39 -0.02 2.21 16 32 H 0.07 2.20 8.13 -2.39 -0.02 2.18 16 33 H 0.07 1.24 8.10 -2.39 -0.02 1.22 16 34 H 0.08 1.44 7.68 -2.38 -0.02 1.43 16 35 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.21 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 Total: -1.00 -73.29 326.34 3.63 -69.65 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -0.91 Total: 6.86 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: 3.56 Total: -21.81 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -0.73 Total: -72.90 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.18 Total: -27.56 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -73.29 3.63 -69.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000757805470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.533 kcal (2) G-P(sol) polarization free energy of solvation -73.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds