Wall clock time and date at job start Mon Mar 30 2020 23:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99541 * 2 1 4 4 H 1.09001 * 109.47324 * 30.00611 * 3 2 1 5 5 C 1.53005 * 109.47357 * 269.99941 * 3 2 1 6 6 C 1.52999 * 109.46878 * 150.00047 * 3 2 1 7 7 C 1.50707 * 109.47244 * 295.00058 * 6 3 2 8 8 O 1.20829 * 119.99515 * 0.02562 * 7 6 3 9 9 O 1.34223 * 120.00301 * 179.97438 * 7 6 3 10 10 C 1.45196 * 117.00332 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.75213 * 269.72476 * 11 10 9 13 13 C 1.37614 * 120.25123 * 179.71891 * 12 11 10 14 14 C 1.40719 * 119.74124 * 0.57305 * 13 12 11 15 15 C 1.41395 * 120.24246 * 179.67718 * 14 13 12 16 16 H 1.07998 * 119.99970 * 155.30784 * 15 14 13 17 17 C 1.39951 * 120.00207 * 335.31835 * 15 14 13 18 18 N 1.30818 * 119.99753 * 342.22830 * 17 15 14 19 19 Si 1.86797 * 120.00021 * 162.22875 * 17 15 14 20 20 H 1.48500 * 109.47048 * 94.66426 * 19 17 15 21 21 H 1.48498 * 109.47252 * 214.66382 * 19 17 15 22 22 H 1.48496 * 109.47461 * 334.66371 * 19 17 15 23 23 C 1.40704 * 119.51466 * 359.70404 * 14 13 12 24 24 C 1.37620 * 119.74516 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47123 * 299.99825 * 1 2 3 27 27 H 1.09000 * 109.46894 * 60.00005 * 1 2 3 28 28 H 1.08998 * 109.46528 * 60.00104 * 5 3 2 29 29 H 1.08998 * 109.46684 * 180.02562 * 5 3 2 30 30 H 1.08995 * 109.46848 * 300.00266 * 5 3 2 31 31 H 1.08999 * 109.47502 * 175.00181 * 6 3 2 32 32 H 1.09003 * 109.47126 * 55.00199 * 6 3 2 33 33 H 1.08998 * 109.46956 * 60.00267 * 10 9 7 34 34 H 1.09001 * 109.47248 * 300.00295 * 10 9 7 35 35 H 1.08005 * 119.87401 * 359.97438 * 12 11 10 36 36 H 1.07997 * 120.13194 * 180.28480 * 13 12 11 37 37 H 0.97004 * 119.99893 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.13445 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.87742 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3588 1.2634 0.7212 7 6 3.1416 0.9236 2.1734 8 8 2.0228 0.7342 2.5886 9 8 4.1909 0.8305 3.0051 10 6 3.9070 0.4993 4.3900 11 6 5.1969 0.4398 5.1669 12 6 5.8849 -0.7596 5.2673 13 6 7.0667 -0.8242 5.9694 14 6 7.5700 0.3304 6.5968 15 6 8.7798 0.2744 7.3266 16 1 9.3693 1.1687 7.4643 17 6 9.2135 -0.9401 7.8703 18 7 8.3706 -1.9300 8.0150 19 14 10.9959 -1.1475 8.3894 20 1 11.1271 -0.8507 9.8385 21 1 11.4279 -2.5442 8.1291 22 1 11.8495 -0.2126 7.6133 23 6 6.8603 1.5409 6.4931 24 6 5.6839 1.5838 5.7803 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.2568 1.8015 -1.9563 29 1 2.6613 2.7671 -1.4424 30 1 2.8829 1.0776 -1.9563 31 1 3.8426 2.2371 0.6444 32 1 3.9931 0.5053 0.2617 33 1 3.4091 -0.4692 4.4372 34 1 3.2588 1.2625 4.8206 35 1 5.4940 -1.6456 4.7892 36 1 7.6035 -1.7585 6.0424 37 1 8.6711 -2.7717 8.3922 38 1 7.2373 2.4331 6.9711 39 1 5.1377 2.5119 5.6990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:18 Heat of formation + Delta-G solvation = -128.949649 kcal Electronic energy + Delta-G solvation = -20680.241835 eV Core-core repulsion = 17359.313155 eV Total energy + Delta-G solvation = -3320.928680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17011 -38.32210 -37.57618 -35.90959 -33.85217 -33.07133 -30.80853 -29.36252 -28.63338 -27.04721 -26.59714 -23.87193 -22.12074 -21.07242 -20.38621 -20.01726 -17.39290 -17.34269 -17.07015 -16.40284 -15.86216 -15.34801 -15.24934 -14.84232 -14.18691 -13.86347 -13.76028 -13.26706 -12.90416 -12.70594 -12.62699 -12.36702 -12.20491 -12.01779 -11.91214 -11.60961 -11.51150 -11.23861 -11.10727 -10.92306 -10.61863 -10.60405 -10.13031 -10.09511 -9.76388 -9.65868 -9.45593 -9.20090 -7.54671 -7.44023 -6.85887 -4.45000 2.47336 2.54585 2.96386 3.01683 3.03634 3.08811 3.40967 3.63703 3.86654 4.51939 4.56246 4.83499 4.92079 5.18034 5.24387 5.29381 5.37511 5.42581 5.47931 5.63202 5.63746 5.69279 5.71542 5.77352 5.90964 6.12864 6.27079 6.33430 6.87605 6.94432 6.98896 7.07957 7.19731 7.27866 7.53119 7.75471 7.97107 8.02628 8.15577 8.20560 8.55171 8.79866 8.88174 10.08352 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040984 B = 0.002851 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.022786 B = 9819.735082 C = 9854.279576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.096 3.904 4 H 0.069 0.931 5 C -0.174 4.174 6 C -0.117 4.117 7 C 0.457 3.543 8 O -0.516 6.516 9 O -0.353 6.353 10 C 0.137 3.863 11 C -0.235 4.235 12 C -0.075 4.075 13 C -0.170 4.170 14 C 0.118 3.882 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.787 5.787 19 Si 0.909 3.091 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.230 4.230 24 C -0.064 4.064 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.282 0.718 38 H 0.095 0.905 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 4.242 -13.190 16.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.297 6.297 3 C 0.038 3.962 4 H 0.087 0.913 5 C -0.231 4.231 6 C -0.154 4.154 7 C 0.300 3.700 8 O -0.405 6.405 9 O -0.270 6.270 10 C 0.065 3.935 11 C -0.236 4.236 12 C -0.094 4.094 13 C -0.189 4.189 14 C 0.116 3.884 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.411 5.411 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.250 4.250 24 C -0.083 4.083 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.913 3.760 -12.911 16.133 hybrid contribution 0.443 -0.026 0.431 0.619 sum -8.470 3.734 -12.480 15.538 Atomic orbital electron populations 1.22709 0.80987 1.02531 0.99705 1.87908 1.19863 1.26936 1.94967 1.21873 0.93456 0.85937 0.94934 0.91287 1.22281 1.02676 1.01864 0.96303 1.21573 0.99090 1.05546 0.89214 1.23466 0.83420 0.73741 0.89354 1.90606 1.25429 1.46302 1.78163 1.86692 1.37423 1.79886 1.22954 1.21683 0.96396 0.99561 0.75882 1.18684 1.00099 0.95273 1.09549 1.20546 0.95443 0.95205 0.98213 1.21292 0.97012 0.99805 1.00808 1.17683 0.91331 0.90965 0.88441 1.19663 1.05104 0.95129 1.28691 0.90190 1.25971 0.99442 0.95215 0.93727 1.69825 1.35542 1.04095 1.31652 0.86279 0.82234 0.78671 0.79477 1.19481 1.19928 1.18312 1.20948 0.97438 0.98478 1.08132 1.20382 0.95723 0.95317 0.96849 0.89952 0.93547 0.94616 0.92091 0.91266 0.91421 0.86642 0.86996 0.92069 0.92236 0.89305 0.86284 0.90658 0.88727 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.82 101.05 1.09 1.47 16 2 O -0.38 -4.90 9.58 -49.68 -0.48 -5.38 16 3 C 0.10 1.03 2.27 -26.73 -0.06 0.97 16 4 H 0.07 0.75 7.60 -51.93 -0.39 0.36 16 5 C -0.17 -1.34 9.53 37.16 0.35 -0.99 16 6 C -0.12 -1.34 5.52 -27.88 -0.15 -1.49 16 7 C 0.46 7.42 7.84 36.01 0.28 7.70 16 8 O -0.52 -9.45 15.17 -24.06 -0.36 -9.82 16 9 O -0.35 -6.57 10.20 -39.24 -0.40 -6.97 16 10 C 0.14 2.69 5.58 36.00 0.20 2.89 16 11 C -0.23 -5.28 5.54 -104.33 -0.58 -5.86 16 12 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 13 C -0.17 -4.40 8.70 -38.87 -0.34 -4.74 16 14 C 0.12 3.13 5.57 -106.83 -0.60 2.54 16 15 C -0.46 -11.91 9.05 -37.74 -0.34 -12.25 16 16 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 17 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.79 -19.97 10.97 55.55 0.61 -19.36 16 19 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.23 -5.63 9.80 -38.88 -0.38 -6.01 16 24 C -0.06 -1.45 9.67 -39.66 -0.38 -1.84 16 25 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 28 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.18 8.07 -51.93 -0.42 0.76 16 34 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 35 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 36 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 37 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 38 H 0.09 2.15 8.06 -52.48 -0.42 1.73 16 39 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -29.51 336.36 -7.69 -37.20 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.73 Total: 4.09 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.37 Total: -18.01 kcal Atomic # 7 Polarization: -19.97 SS G_CDS: 0.61 Total: -19.36 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -1.24 Total: -22.16 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.51 -7.69 -37.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.747 kcal (2) G-P(sol) polarization free energy of solvation -29.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds