Wall clock time and date at job start Mon Mar 30 2020 23:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99541 * 2 1 4 4 H 1.09001 * 109.47324 * 30.00611 * 3 2 1 5 5 C 1.53005 * 109.47357 * 269.99941 * 3 2 1 6 6 C 1.52999 * 109.46878 * 150.00047 * 3 2 1 7 7 C 1.50707 * 109.47244 * 295.00058 * 6 3 2 8 8 O 1.20829 * 119.99515 * 0.02562 * 7 6 3 9 9 O 1.34223 * 120.00301 * 179.97438 * 7 6 3 10 10 C 1.45196 * 117.00332 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47354 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.75213 * 269.72476 * 11 10 9 13 13 C 1.37614 * 120.25123 * 179.71891 * 12 11 10 14 14 C 1.40719 * 119.74124 * 0.57305 * 13 12 11 15 15 C 1.41395 * 120.24246 * 179.67718 * 14 13 12 16 16 H 1.07998 * 119.99970 * 155.30784 * 15 14 13 17 17 C 1.39951 * 120.00207 * 335.31835 * 15 14 13 18 18 N 1.30818 * 119.99753 * 342.22830 * 17 15 14 19 19 Si 1.86797 * 120.00021 * 162.22875 * 17 15 14 20 20 H 1.48500 * 109.47048 * 94.66426 * 19 17 15 21 21 H 1.48498 * 109.47252 * 214.66382 * 19 17 15 22 22 H 1.48496 * 109.47461 * 334.66371 * 19 17 15 23 23 C 1.40704 * 119.51466 * 359.70404 * 14 13 12 24 24 C 1.37620 * 119.74516 * 359.97438 * 23 14 13 25 25 H 1.09004 * 109.47086 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47123 * 299.99825 * 1 2 3 27 27 H 1.09000 * 109.46894 * 60.00005 * 1 2 3 28 28 H 1.08998 * 109.46528 * 60.00104 * 5 3 2 29 29 H 1.08998 * 109.46684 * 180.02562 * 5 3 2 30 30 H 1.08995 * 109.46848 * 300.00266 * 5 3 2 31 31 H 1.08999 * 109.47502 * 175.00181 * 6 3 2 32 32 H 1.09003 * 109.47126 * 55.00199 * 6 3 2 33 33 H 1.08998 * 109.46956 * 60.00267 * 10 9 7 34 34 H 1.09001 * 109.47248 * 300.00295 * 10 9 7 35 35 H 1.08005 * 119.87401 * 359.97438 * 12 11 10 36 36 H 1.07997 * 120.13194 * 180.28480 * 13 12 11 37 37 H 0.97004 * 119.99893 * 180.02562 * 18 17 15 38 38 H 1.08007 * 120.13445 * 179.97438 * 23 14 13 39 39 H 1.08000 * 119.87742 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3588 1.2634 0.7212 7 6 3.1416 0.9236 2.1734 8 8 2.0228 0.7342 2.5886 9 8 4.1909 0.8305 3.0051 10 6 3.9070 0.4993 4.3900 11 6 5.1969 0.4398 5.1669 12 6 5.8849 -0.7596 5.2673 13 6 7.0667 -0.8242 5.9694 14 6 7.5700 0.3304 6.5968 15 6 8.7798 0.2744 7.3266 16 1 9.3693 1.1687 7.4643 17 6 9.2135 -0.9401 7.8703 18 7 8.3706 -1.9300 8.0150 19 14 10.9959 -1.1475 8.3894 20 1 11.1271 -0.8507 9.8385 21 1 11.4279 -2.5442 8.1291 22 1 11.8495 -0.2126 7.6133 23 6 6.8603 1.5409 6.4931 24 6 5.6839 1.5838 5.7803 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.2568 1.8015 -1.9563 29 1 2.6613 2.7671 -1.4424 30 1 2.8829 1.0776 -1.9563 31 1 3.8426 2.2371 0.6444 32 1 3.9931 0.5053 0.2617 33 1 3.4091 -0.4692 4.4372 34 1 3.2588 1.2625 4.8206 35 1 5.4940 -1.6456 4.7892 36 1 7.6035 -1.7585 6.0424 37 1 8.6711 -2.7717 8.3922 38 1 7.2373 2.4331 6.9711 39 1 5.1377 2.5119 5.6990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:18 Heat of formation + Delta-G solvation = -143.805654 kcal Electronic energy + Delta-G solvation = -20680.886040 eV Core-core repulsion = 17359.313155 eV Total energy + Delta-G solvation = -3321.572885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49030 -39.60325 -39.05471 -37.34774 -35.68117 -33.95061 -32.58334 -31.24334 -29.69971 -28.54903 -27.47462 -25.58193 -23.16919 -22.94907 -21.86080 -21.46238 -19.27542 -18.62618 -18.02955 -17.74830 -17.24925 -17.00817 -16.12781 -16.08359 -15.72150 -15.50536 -15.35279 -14.41402 -14.25152 -14.01594 -13.86779 -13.69380 -13.45842 -13.25862 -13.09468 -13.01467 -12.90705 -12.76743 -12.40672 -12.34976 -12.20207 -11.73596 -11.64377 -11.58730 -11.37245 -11.28572 -11.03253 -10.57687 -9.44572 -9.34161 -8.69511 -6.39881 0.73633 1.10160 1.27619 1.38543 1.43890 1.54342 1.98014 2.19600 2.71923 2.84182 3.63213 3.73501 3.87998 4.08905 4.09786 4.15906 4.28003 4.46979 4.47406 4.50816 4.53937 4.55774 4.59586 4.71237 4.82996 4.90083 4.99755 5.00602 5.11560 5.29450 5.32739 5.38609 5.58420 5.64468 5.87938 6.05052 6.13737 6.27707 6.31086 6.63575 6.82305 6.88008 6.96591 8.27658 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040984 B = 0.002851 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.022786 B = 9819.735082 C = 9854.279576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.407 6.407 3 C 0.091 3.909 4 H 0.064 0.936 5 C -0.166 4.166 6 C -0.112 4.112 7 C 0.453 3.547 8 O -0.540 6.540 9 O -0.363 6.363 10 C 0.143 3.857 11 C -0.231 4.231 12 C -0.082 4.082 13 C -0.193 4.193 14 C 0.088 3.912 15 C -0.493 4.493 16 H 0.081 0.919 17 C 0.034 3.966 18 N -0.820 5.820 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.266 1.266 22 H -0.257 1.257 23 C -0.244 4.244 24 C -0.065 4.065 25 H 0.088 0.912 26 H 0.033 0.967 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.290 0.710 38 H 0.104 0.896 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.742 5.160 -14.582 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.326 6.326 3 C 0.034 3.966 4 H 0.082 0.918 5 C -0.223 4.223 6 C -0.149 4.149 7 C 0.298 3.702 8 O -0.430 6.430 9 O -0.280 6.280 10 C 0.070 3.930 11 C -0.232 4.232 12 C -0.100 4.100 13 C -0.212 4.212 14 C 0.085 3.915 15 C -0.522 4.522 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.445 5.445 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.083 4.083 25 H 0.106 0.894 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.165 0.835 32 H 0.140 0.860 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.989 4.689 -14.320 17.546 hybrid contribution 0.290 -0.282 0.783 0.881 sum -8.698 4.406 -13.537 16.683 Atomic orbital electron populations 1.22806 0.79984 1.03171 1.00219 1.87861 1.21146 1.28418 1.95218 1.22053 0.92724 0.85131 0.96715 0.91788 1.22227 1.03344 1.02801 0.93934 1.21803 1.00195 1.07430 0.85439 1.24430 0.82483 0.72656 0.90615 1.90599 1.26217 1.47380 1.78786 1.86664 1.38669 1.80294 1.22410 1.21467 0.94712 1.00112 0.76701 1.18995 1.00536 0.94660 1.08995 1.20767 0.94952 0.96504 0.97824 1.21257 0.98224 0.99356 1.02378 1.18045 0.92250 0.91935 0.89264 1.19926 1.05866 0.96195 1.30178 0.90120 1.26846 1.03750 0.94357 0.93190 1.69873 1.37591 1.04767 1.32254 0.85151 0.76276 0.78837 0.79232 1.18595 1.19016 1.18076 1.21174 0.98173 0.98290 1.08731 1.20700 0.95185 0.96628 0.95776 0.89386 0.94789 0.92281 0.91376 0.89283 0.91304 0.83473 0.85988 0.92091 0.91080 0.87860 0.87847 0.89879 0.87752 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.82 113.37 1.23 1.89 16 2 O -0.41 -9.97 9.58 -135.16 -1.30 -11.27 16 3 C 0.09 1.76 2.27 30.60 0.07 1.83 16 4 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 5 C -0.17 -2.04 9.53 71.98 0.69 -1.36 16 6 C -0.11 -2.27 5.52 29.85 0.16 -2.11 16 7 C 0.45 13.97 7.84 71.24 0.56 14.53 16 8 O -0.54 -19.23 15.17 27.03 0.41 -18.82 16 9 O -0.36 -12.95 10.20 -51.35 -0.52 -13.47 16 10 C 0.14 5.41 5.58 71.24 0.40 5.81 16 11 C -0.23 -10.21 5.54 -19.67 -0.11 -10.32 16 12 C -0.08 -3.93 9.67 22.22 0.21 -3.71 16 13 C -0.19 -10.28 8.70 22.73 0.20 -10.09 16 14 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 15 C -0.49 -26.35 9.05 23.46 0.21 -26.14 16 16 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 17 C 0.03 1.72 5.14 85.26 0.44 2.16 16 18 N -0.82 -42.59 10.97 21.83 0.24 -42.35 16 19 Si 0.98 37.47 29.59 68.60 2.03 39.50 16 20 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 21 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 22 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 23 C -0.24 -11.99 9.80 22.73 0.22 -11.77 16 24 C -0.06 -2.87 9.67 22.22 0.21 -2.65 16 25 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.03 0.72 8.08 -2.39 -0.02 0.70 16 27 H 0.06 0.83 7.87 -2.39 -0.02 0.81 16 28 H 0.07 0.76 7.87 -2.39 -0.02 0.74 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 35 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.10 5.74 6.18 -2.91 -0.02 5.72 16 37 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 38 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 Total: -1.00 -64.64 336.36 6.27 -58.37 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 1.03 Total: 25.34 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 4.38 Total: -37.30 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.24 Total: -42.35 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.41 Total: -43.56 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Total: -64.64 6.27 -58.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.433 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds