Wall clock time and date at job start Mon Mar 30 2020 23:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00008 * 2 1 4 4 H 1.09002 * 109.47200 * 330.00594 * 3 2 1 5 5 C 1.53001 * 109.46676 * 90.00327 * 3 2 1 6 6 C 1.52994 * 109.47127 * 210.00086 * 3 2 1 7 7 C 1.50698 * 109.47122 * 65.00674 * 6 3 2 8 8 O 1.20825 * 120.00100 * 359.97438 * 7 6 3 9 9 O 1.34233 * 120.00334 * 180.02562 * 7 6 3 10 10 C 1.45196 * 117.00261 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.38636 * 119.74593 * 269.72920 * 11 10 9 13 13 C 1.37623 * 120.24521 * 179.71976 * 12 11 10 14 14 C 1.40712 * 119.74377 * 0.57054 * 13 12 11 15 15 C 1.41400 * 120.24363 * 179.68527 * 14 13 12 16 16 H 1.08001 * 120.00225 * 155.30418 * 15 14 13 17 17 C 1.39946 * 119.99839 * 335.30245 * 15 14 13 18 18 N 1.30831 * 120.00014 * 342.23943 * 17 15 14 19 19 Si 1.86794 * 120.00069 * 162.23213 * 17 15 14 20 20 H 1.48508 * 109.46924 * 94.66506 * 19 17 15 21 21 H 1.48501 * 109.47416 * 214.66563 * 19 17 15 22 22 H 1.48502 * 109.47160 * 334.66844 * 19 17 15 23 23 C 1.40718 * 119.51400 * 359.69745 * 14 13 12 24 24 C 1.37614 * 119.74148 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47172 * 59.99557 * 1 2 3 26 26 H 1.09005 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46627 * 299.99463 * 1 2 3 28 28 H 1.08997 * 109.47105 * 299.99598 * 5 3 2 29 29 H 1.09002 * 109.47588 * 60.00027 * 5 3 2 30 30 H 1.09004 * 109.46837 * 180.02562 * 5 3 2 31 31 H 1.08999 * 109.47619 * 305.00172 * 6 3 2 32 32 H 1.08999 * 109.47283 * 185.00048 * 6 3 2 33 33 H 1.08993 * 109.47423 * 59.99229 * 10 9 7 34 34 H 1.08999 * 109.46541 * 299.99087 * 10 9 7 35 35 H 1.07994 * 119.87633 * 359.96685 * 12 11 10 36 36 H 1.08001 * 120.12375 * 180.27241 * 13 12 11 37 37 H 0.96995 * 119.99922 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.12524 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.87435 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7712 1.4426 6 6 3.3589 1.2632 -0.7212 7 6 3.1415 0.9237 -2.1733 8 8 2.0228 0.7345 -2.5886 9 8 4.1909 0.8306 -3.0052 10 6 3.9069 0.4996 -4.3901 11 6 5.1968 0.4401 -5.1671 12 6 5.6806 1.5827 -5.7854 13 6 6.8605 1.5414 -6.4928 14 6 7.5699 0.3306 -6.5970 15 6 8.7797 0.2747 -7.3268 16 1 9.5133 -0.4844 -7.0987 17 6 9.0265 1.2029 -8.3446 18 7 8.0376 1.8873 -8.8597 19 14 10.7679 1.4649 -8.9676 20 1 10.9992 0.6145 -10.1629 21 1 10.9538 2.8924 -9.3322 22 1 11.7353 1.0959 -7.9030 23 6 7.0663 -0.8241 -5.9700 24 6 5.8875 -0.7581 -5.2631 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.2569 1.8013 1.9564 29 1 2.8830 1.0773 1.9564 30 1 2.6607 2.7672 1.4426 31 1 3.9931 0.5051 -0.2618 32 1 3.8427 2.2369 -0.6443 33 1 3.2587 1.2628 -4.8206 34 1 3.4089 -0.4688 -4.4373 35 1 5.1317 2.5095 -5.7084 36 1 7.2378 2.4337 -6.9700 37 1 8.2087 2.5304 -9.5654 38 1 7.6025 -1.7586 -6.0440 39 1 5.4993 -1.6429 -4.7806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776114195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:20 Heat of formation + Delta-G solvation = -128.984092 kcal Electronic energy + Delta-G solvation = -20675.089918 eV Core-core repulsion = 17354.159745 eV Total energy + Delta-G solvation = -3320.930174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17106 -38.32450 -37.57709 -35.91010 -33.85238 -33.07279 -30.80883 -29.36312 -28.63409 -27.04837 -26.60026 -23.87312 -22.12131 -21.07412 -20.38623 -20.01822 -17.40146 -17.33397 -17.07391 -16.40492 -15.85937 -15.35795 -15.23842 -14.85917 -14.17654 -13.85045 -13.77938 -13.27282 -12.89957 -12.70745 -12.62640 -12.36903 -12.20554 -12.02039 -11.91411 -11.60734 -11.51667 -11.23548 -11.10939 -10.92546 -10.62161 -10.60442 -10.13216 -10.09451 -9.76395 -9.66157 -9.45761 -9.20254 -7.54818 -7.43993 -6.86137 -4.45123 2.47219 2.54531 2.96253 3.01531 3.03363 3.08629 3.40884 3.63385 3.86477 4.51718 4.56212 4.83443 4.92162 5.17878 5.24526 5.29240 5.37164 5.42612 5.47886 5.62903 5.63879 5.69260 5.71448 5.77039 5.90858 6.13164 6.27532 6.32945 6.87558 6.94361 6.98803 7.07601 7.19604 7.27727 7.53029 7.75532 7.96977 8.02397 8.15490 8.20486 8.54949 8.79772 8.88012 10.08125 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044943 B = 0.002834 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.859251 B = 9875.975324 C = 9991.739800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.096 3.904 4 H 0.069 0.931 5 C -0.174 4.174 6 C -0.117 4.117 7 C 0.457 3.543 8 O -0.516 6.516 9 O -0.353 6.353 10 C 0.137 3.863 11 C -0.235 4.235 12 C -0.076 4.076 13 C -0.170 4.170 14 C 0.118 3.882 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.787 5.787 19 Si 0.909 3.091 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.230 4.230 24 C -0.064 4.064 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.035 0.965 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.112 0.888 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.282 0.718 38 H 0.095 0.905 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 1.759 13.748 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.297 6.297 3 C 0.038 3.962 4 H 0.087 0.913 5 C -0.231 4.231 6 C -0.154 4.154 7 C 0.300 3.700 8 O -0.405 6.405 9 O -0.270 6.270 10 C 0.065 3.935 11 C -0.236 4.236 12 C -0.095 4.095 13 C -0.189 4.189 14 C 0.116 3.884 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.249 4.249 24 C -0.082 4.082 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.736 1.699 13.376 16.066 hybrid contribution 0.410 0.340 -0.513 0.740 sum -8.326 2.040 12.862 15.457 Atomic orbital electron populations 1.22708 0.80986 1.02519 0.99722 1.87902 1.19865 1.26959 1.94971 1.21872 0.93461 0.85928 0.94940 0.91274 1.22282 1.02678 1.01870 0.96295 1.21570 0.99081 1.05562 0.89205 1.23466 0.83421 0.73738 0.89355 1.90605 1.25429 1.46300 1.78160 1.86694 1.37422 1.79906 1.22940 1.21682 0.96418 0.99533 0.75890 1.18684 1.00006 0.95604 1.09305 1.20534 0.96237 0.95404 0.97279 1.21290 0.96304 0.98566 1.02790 1.17686 0.91634 0.90461 0.88640 1.19666 1.02365 1.12521 1.14023 0.90182 1.25971 0.98889 0.93996 0.95492 1.69828 1.32656 1.18960 1.19727 0.86281 0.82356 0.78434 0.79594 1.19474 1.19938 1.18306 1.20955 0.98196 0.97549 1.08242 1.20392 0.94953 0.95399 0.97482 0.93546 0.89960 0.94605 0.92096 0.91423 0.91257 0.87011 0.86623 0.92152 0.92152 0.89356 0.86291 0.90675 0.88707 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.82 101.05 1.09 1.47 16 2 O -0.38 -4.87 9.58 -49.68 -0.48 -5.35 16 3 C 0.10 1.03 2.27 -26.73 -0.06 0.97 16 4 H 0.07 0.76 7.60 -51.93 -0.39 0.36 16 5 C -0.17 -1.34 9.53 37.16 0.35 -0.99 16 6 C -0.12 -1.33 5.52 -27.89 -0.15 -1.49 16 7 C 0.46 7.42 7.84 36.00 0.28 7.70 16 8 O -0.52 -9.45 15.17 -24.05 -0.36 -9.82 16 9 O -0.35 -6.57 10.20 -39.27 -0.40 -6.97 16 10 C 0.14 2.68 5.58 36.01 0.20 2.89 16 11 C -0.23 -5.28 5.54 -104.33 -0.58 -5.86 16 12 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 13 C -0.17 -4.39 8.70 -38.87 -0.34 -4.73 16 14 C 0.12 3.13 5.57 -106.82 -0.60 2.54 16 15 C -0.46 -11.91 9.05 -37.74 -0.34 -12.25 16 16 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 17 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.79 -19.93 10.97 55.55 0.61 -19.32 16 19 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 20 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.23 -5.64 9.80 -38.87 -0.38 -6.02 16 24 C -0.06 -1.46 9.67 -39.66 -0.38 -1.84 16 25 H 0.05 0.50 8.08 -51.93 -0.42 0.08 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 28 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -29.47 336.36 -7.69 -37.16 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.73 Total: 4.08 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -1.37 Total: -18.01 kcal Atomic # 7 Polarization: -19.93 SS G_CDS: 0.61 Total: -19.32 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -1.24 Total: -22.13 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.47 -7.69 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.821 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds