Wall clock time and date at job start Mon Mar 30 2020 23:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 114.00008 * 2 1 4 4 H 1.09002 * 109.47200 * 330.00594 * 3 2 1 5 5 C 1.53001 * 109.46676 * 90.00327 * 3 2 1 6 6 C 1.52994 * 109.47127 * 210.00086 * 3 2 1 7 7 C 1.50698 * 109.47122 * 65.00674 * 6 3 2 8 8 O 1.20825 * 120.00100 * 359.97438 * 7 6 3 9 9 O 1.34233 * 120.00334 * 180.02562 * 7 6 3 10 10 C 1.45196 * 117.00261 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47289 * 179.97438 * 10 9 7 12 12 C 1.38636 * 119.74593 * 269.72920 * 11 10 9 13 13 C 1.37623 * 120.24521 * 179.71976 * 12 11 10 14 14 C 1.40712 * 119.74377 * 0.57054 * 13 12 11 15 15 C 1.41400 * 120.24363 * 179.68527 * 14 13 12 16 16 H 1.08001 * 120.00225 * 155.30418 * 15 14 13 17 17 C 1.39946 * 119.99839 * 335.30245 * 15 14 13 18 18 N 1.30831 * 120.00014 * 342.23943 * 17 15 14 19 19 Si 1.86794 * 120.00069 * 162.23213 * 17 15 14 20 20 H 1.48508 * 109.46924 * 94.66506 * 19 17 15 21 21 H 1.48501 * 109.47416 * 214.66563 * 19 17 15 22 22 H 1.48502 * 109.47160 * 334.66844 * 19 17 15 23 23 C 1.40718 * 119.51400 * 359.69745 * 14 13 12 24 24 C 1.37614 * 119.74148 * 0.02562 * 23 14 13 25 25 H 1.08995 * 109.47172 * 59.99557 * 1 2 3 26 26 H 1.09005 * 109.47067 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46627 * 299.99463 * 1 2 3 28 28 H 1.08997 * 109.47105 * 299.99598 * 5 3 2 29 29 H 1.09002 * 109.47588 * 60.00027 * 5 3 2 30 30 H 1.09004 * 109.46837 * 180.02562 * 5 3 2 31 31 H 1.08999 * 109.47619 * 305.00172 * 6 3 2 32 32 H 1.08999 * 109.47283 * 185.00048 * 6 3 2 33 33 H 1.08993 * 109.47423 * 59.99229 * 10 9 7 34 34 H 1.08999 * 109.46541 * 299.99087 * 10 9 7 35 35 H 1.07994 * 119.87633 * 359.96685 * 12 11 10 36 36 H 1.08001 * 120.12375 * 180.27241 * 13 12 11 37 37 H 0.96995 * 119.99922 * 180.02562 * 18 17 15 38 38 H 1.08001 * 120.12524 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.87435 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7712 1.4426 6 6 3.3589 1.2632 -0.7212 7 6 3.1415 0.9237 -2.1733 8 8 2.0228 0.7345 -2.5886 9 8 4.1909 0.8306 -3.0052 10 6 3.9069 0.4996 -4.3901 11 6 5.1968 0.4401 -5.1671 12 6 5.6806 1.5827 -5.7854 13 6 6.8605 1.5414 -6.4928 14 6 7.5699 0.3306 -6.5970 15 6 8.7797 0.2747 -7.3268 16 1 9.5133 -0.4844 -7.0987 17 6 9.0265 1.2029 -8.3446 18 7 8.0376 1.8873 -8.8597 19 14 10.7679 1.4649 -8.9676 20 1 10.9992 0.6145 -10.1629 21 1 10.9538 2.8924 -9.3322 22 1 11.7353 1.0959 -7.9030 23 6 7.0663 -0.8241 -5.9700 24 6 5.8875 -0.7581 -5.2631 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.2569 1.8013 1.9564 29 1 2.8830 1.0773 1.9564 30 1 2.6607 2.7672 1.4426 31 1 3.9931 0.5051 -0.2618 32 1 3.8427 2.2369 -0.6443 33 1 3.2587 1.2628 -4.8206 34 1 3.4089 -0.4688 -4.4373 35 1 5.1317 2.5095 -5.7084 36 1 7.2378 2.4337 -6.9700 37 1 8.2087 2.5304 -9.5654 38 1 7.6025 -1.7586 -6.0440 39 1 5.4993 -1.6429 -4.7806 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776114195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:20 Heat of formation + Delta-G solvation = -143.770386 kcal Electronic energy + Delta-G solvation = -20675.731100 eV Core-core repulsion = 17354.159745 eV Total energy + Delta-G solvation = -3321.571355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49102 -39.60370 -39.05438 -37.34795 -35.68042 -33.95077 -32.58319 -31.24313 -29.70076 -28.54974 -27.47282 -25.58256 -23.16900 -22.95085 -21.86060 -21.46293 -19.27637 -18.62634 -18.03253 -17.74674 -17.24280 -17.01216 -16.12630 -16.09203 -15.71383 -15.50278 -15.35597 -14.41687 -14.24385 -14.03066 -13.87658 -13.66396 -13.46735 -13.26917 -13.11084 -12.95501 -12.94658 -12.76792 -12.41234 -12.34614 -12.20078 -11.73127 -11.64326 -11.59655 -11.36676 -11.28878 -11.03259 -10.57632 -9.44492 -9.34292 -8.69537 -6.39921 0.73598 1.10008 1.27597 1.38664 1.43842 1.54377 1.97952 2.19755 2.71797 2.83972 3.63133 3.73432 3.87948 4.09131 4.09424 4.15808 4.27908 4.47185 4.47778 4.50885 4.53427 4.55975 4.59435 4.71267 4.83027 4.90181 4.99471 5.00502 5.11607 5.29404 5.32560 5.38622 5.58358 5.64431 5.87977 6.04910 6.13533 6.27481 6.31186 6.63450 6.82225 6.88029 6.96423 8.27675 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044943 B = 0.002834 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.859251 B = 9875.975324 C = 9991.739800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.406 6.406 3 C 0.092 3.908 4 H 0.063 0.937 5 C -0.166 4.166 6 C -0.112 4.112 7 C 0.453 3.547 8 O -0.540 6.540 9 O -0.363 6.363 10 C 0.143 3.857 11 C -0.230 4.230 12 C -0.080 4.080 13 C -0.192 4.192 14 C 0.088 3.912 15 C -0.493 4.493 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.819 5.819 19 Si 0.985 3.015 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.245 4.245 24 C -0.067 4.067 25 H 0.033 0.967 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.146 0.854 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.291 0.709 38 H 0.103 0.897 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 2.167 15.242 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.325 6.325 3 C 0.034 3.966 4 H 0.081 0.919 5 C -0.223 4.223 6 C -0.149 4.149 7 C 0.298 3.702 8 O -0.430 6.430 9 O -0.280 6.280 10 C 0.070 3.930 11 C -0.232 4.232 12 C -0.099 4.099 13 C -0.212 4.212 14 C 0.085 3.915 15 C -0.522 4.522 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.444 5.444 19 Si 0.805 3.195 20 H -0.186 1.186 21 H -0.189 1.189 22 H -0.181 1.181 23 C -0.264 4.264 24 C -0.085 4.085 25 H 0.051 0.949 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.164 0.836 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.773 2.105 14.890 17.410 hybrid contribution 0.251 0.191 -0.888 0.942 sum -8.522 2.296 14.002 16.551 Atomic orbital electron populations 1.22807 0.79989 1.03202 1.00188 1.87856 1.21129 1.28348 1.95215 1.22043 0.92718 0.85148 0.96701 0.91903 1.22227 1.03361 1.02781 0.93940 1.21797 1.00199 1.07415 0.85450 1.24428 0.82485 0.72652 0.90615 1.90598 1.26215 1.47383 1.78783 1.86666 1.38661 1.80336 1.22376 1.21465 0.94683 1.00177 0.76666 1.18994 1.00530 0.95025 1.08622 1.20769 0.95672 0.96746 0.96673 1.21267 0.97640 0.98110 1.04167 1.18047 0.92463 0.91322 0.89652 1.19922 1.02841 1.14032 1.15394 0.90211 1.26836 1.03073 0.93091 0.95092 1.69871 1.34773 1.19485 1.20315 0.85155 0.76659 0.78729 0.78966 1.18641 1.18919 1.18130 1.21165 0.99119 0.97463 1.08665 1.20696 0.94305 0.96583 0.96890 0.94851 0.89295 0.92313 0.91382 0.91208 0.89374 0.85818 0.83628 0.91622 0.91545 0.87501 0.87717 0.89854 0.87901 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.82 113.37 1.23 1.88 16 2 O -0.41 -9.83 9.58 -135.17 -1.30 -11.13 16 3 C 0.09 1.77 2.27 30.59 0.07 1.84 16 4 H 0.06 1.27 7.60 -2.39 -0.02 1.25 16 5 C -0.17 -2.05 9.53 71.98 0.69 -1.36 16 6 C -0.11 -2.27 5.52 29.85 0.16 -2.11 16 7 C 0.45 13.98 7.84 71.24 0.56 14.53 16 8 O -0.54 -19.24 15.17 27.04 0.41 -18.83 16 9 O -0.36 -12.95 10.20 -51.44 -0.52 -13.47 16 10 C 0.14 5.41 5.58 71.24 0.40 5.81 16 11 C -0.23 -10.21 5.54 -19.67 -0.11 -10.32 16 12 C -0.08 -3.78 9.67 22.22 0.21 -3.57 16 13 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 14 C 0.09 4.76 5.57 -21.29 -0.12 4.64 16 15 C -0.49 -26.39 9.05 23.46 0.21 -26.17 16 16 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 17 C 0.03 1.74 5.14 85.26 0.44 2.18 16 18 N -0.82 -42.32 10.97 21.83 0.24 -42.08 16 19 Si 0.98 37.36 29.59 68.60 2.03 39.39 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 23 C -0.24 -12.13 9.80 22.73 0.22 -11.91 16 24 C -0.07 -2.99 9.67 22.22 0.21 -2.78 16 25 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 26 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 0.82 7.87 -2.38 -0.02 0.80 16 28 H 0.07 0.76 7.87 -2.39 -0.02 0.74 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 34 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 35 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 36 H 0.10 5.74 6.18 -2.91 -0.02 5.72 16 37 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 38 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -64.37 336.36 6.26 -58.10 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 1.03 Total: 25.33 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 4.38 Total: -37.33 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.24 Total: -42.08 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.41 Total: -43.43 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -64.37 6.26 -58.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776114195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.668 kcal (2) G-P(sol) polarization free energy of solvation -64.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds