Wall clock time and date at job start Tue Mar 31 2020 00:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99891 * 3 2 1 5 5 H 1.48499 * 109.46984 * 29.99675 * 3 2 1 6 6 H 1.48493 * 109.47552 * 149.99793 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.50693 * 109.47486 * 179.72204 * 14 12 11 16 16 N 1.31076 * 125.95831 * 269.68913 * 15 14 12 17 17 N 1.40300 * 108.27109 * 179.91147 * 16 15 14 18 18 H 0.96992 * 126.09223 * 180.09539 * 17 16 15 19 19 C 1.34325 * 107.81284 * 0.30955 * 17 16 15 20 20 C 1.35754 * 107.84750 * 359.86260 * 19 17 16 21 21 C 1.50837 * 124.11350 * 179.83007 * 20 19 17 22 22 C 1.53370 * 108.38021 * 343.46704 * 21 20 19 23 23 C 1.53118 * 109.50653 * 49.93971 * 22 21 20 24 24 C 1.50825 * 128.03327 * 179.90872 * 19 17 16 25 25 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 27 27 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 28 28 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 29 29 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 30 30 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 31 31 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 32 32 H 1.09003 * 109.68298 * 103.19344 * 21 20 19 33 33 H 1.09001 * 109.68720 * 223.75413 * 21 20 19 34 34 H 1.09000 * 109.46810 * 289.93324 * 22 21 20 35 35 H 1.08993 * 109.46686 * 169.94994 * 22 21 20 36 36 H 1.09001 * 109.45837 * 169.70927 * 23 22 21 37 37 H 1.08991 * 109.45850 * 49.72886 * 23 22 21 38 38 H 1.09002 * 109.68039 * 283.13268 * 24 19 17 39 39 H 1.08996 * 109.68519 * 43.68581 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 6 2.6040 -8.4806 -0.0076 16 7 3.1312 -9.0379 -1.0704 17 7 4.0544 -10.0059 -0.6474 18 1 4.5930 -10.5716 -1.2224 19 6 4.0560 -10.0129 0.6959 20 6 3.1661 -9.0786 1.1179 21 6 2.8741 -8.7825 2.5678 22 6 3.4018 -9.9470 3.4150 23 6 4.8492 -10.2522 3.0195 24 6 4.8765 -10.8779 1.6197 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8712 -3.6039 0.8922 29 1 2.8725 -3.6047 -0.8878 30 1 0.9424 -7.4824 0.8849 31 1 0.9444 -7.4746 -0.8950 32 1 3.3730 -7.8590 2.8616 33 1 1.7984 -8.6814 2.7124 34 1 2.7849 -10.8292 3.2442 35 1 3.3630 -9.6755 4.4698 36 1 5.2825 -10.9486 3.7373 37 1 5.4270 -9.3281 3.0157 38 1 4.4512 -11.8809 1.6574 39 1 5.9041 -10.9277 1.2598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777079076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:14 Heat of formation + Delta-G solvation = -43.717608 kcal Electronic energy + Delta-G solvation = -20969.757995 eV Core-core repulsion = 17684.818005 eV Total energy + Delta-G solvation = -3284.939990 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.72592 -39.74972 -36.72628 -36.06760 -33.66115 -33.29940 -30.70307 -30.05692 -29.52941 -28.47788 -24.97118 -23.75786 -22.35236 -21.84052 -20.70526 -19.53727 -18.89665 -17.69154 -17.35538 -16.17407 -16.00336 -15.73982 -15.39149 -14.50037 -14.31221 -14.18842 -14.00129 -13.89394 -13.43602 -13.23563 -12.89667 -12.55971 -12.31454 -12.16134 -12.04520 -11.18262 -11.16863 -11.08389 -11.00809 -10.81595 -10.71033 -10.65664 -10.54501 -10.17758 -9.65165 -9.58947 -9.38308 -9.24466 -8.41693 -8.36699 -6.07863 -4.11959 1.72619 2.46362 2.66162 2.68132 3.30465 3.35789 3.38963 3.50937 4.28220 4.41828 4.43150 4.55241 4.59712 4.93411 4.97525 5.07711 5.20399 5.28710 5.28786 5.36597 5.40856 5.46138 5.49705 5.71273 5.78075 5.81495 5.96514 6.10532 6.14648 6.16147 6.18023 6.53451 6.68704 7.06817 7.17610 7.57651 7.60021 7.66450 7.90216 8.23990 8.33222 8.93657 9.52261 11.03695 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031911 B = 0.003033 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.222366 B = 9229.054126 C = 9473.734176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.357 6.357 12 C 0.460 3.540 13 O -0.509 6.509 14 C -0.037 4.037 15 C 0.101 3.899 16 N -0.281 5.281 17 N -0.468 5.468 18 H 0.437 0.563 19 C 0.083 3.917 20 C -0.219 4.219 21 C -0.046 4.046 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.055 4.055 25 H 0.263 0.737 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 -24.528 5.217 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.004 3.996 11 O -0.273 6.273 12 C 0.301 3.699 13 O -0.397 6.397 14 C -0.076 4.076 15 C -0.065 4.065 16 N -0.105 5.105 17 N -0.175 5.175 18 H 0.280 0.720 19 C -0.047 4.047 20 C -0.230 4.230 21 C -0.084 4.084 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.094 4.094 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.439 -24.350 3.946 25.494 hybrid contribution 0.918 0.720 0.335 1.214 sum 7.357 -23.630 4.281 25.116 Atomic orbital electron populations 1.69972 1.06077 1.26952 1.49867 1.24977 0.94912 0.99354 0.94904 0.86477 0.79774 0.82861 0.78232 1.20504 1.21053 1.19728 1.20991 0.93181 0.90169 1.52075 0.92295 1.19169 0.94194 0.89007 0.98896 1.23623 0.96341 0.78754 1.00894 1.86509 1.42331 1.15698 1.82798 1.23147 0.86567 0.86900 0.73237 1.90650 1.15738 1.88183 1.45159 1.19560 0.95433 0.85553 1.07087 1.21202 0.97723 0.96778 0.90779 1.77447 1.06493 1.04713 1.21799 1.45866 1.34694 1.32150 1.04800 0.71961 1.20862 0.99368 0.99644 0.84779 1.19694 1.04329 1.02745 0.96200 1.20041 1.01042 0.98370 0.88968 1.21591 0.95767 0.98636 0.99546 1.21558 0.97807 1.01346 0.94597 1.20347 0.98329 0.97267 0.93457 0.92727 0.95330 0.95296 0.92346 0.92427 0.85892 0.86297 0.90944 0.90913 0.91761 0.91282 0.91013 0.91138 0.89851 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 9 C 0.02 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.08 1.75 5.40 37.15 0.20 1.95 16 11 O -0.36 -7.30 10.22 -39.26 -0.40 -7.70 16 12 C 0.46 8.41 7.95 36.00 0.29 8.70 16 13 O -0.51 -10.81 15.78 -18.76 -0.30 -11.11 16 14 C -0.04 -0.50 6.24 -29.04 -0.18 -0.68 16 15 C 0.10 1.46 5.71 -82.53 -0.47 0.99 16 16 N -0.28 -4.20 12.71 33.59 0.43 -3.77 16 17 N -0.47 -5.32 7.34 33.48 0.25 -5.07 16 18 H 0.44 3.41 8.96 -182.45 -1.64 1.77 16 19 C 0.08 0.89 7.08 -82.33 -0.58 0.31 16 20 C -0.22 -2.75 5.91 -105.05 -0.62 -3.37 16 21 C -0.05 -0.47 6.05 -27.62 -0.17 -0.64 16 22 C -0.12 -0.89 5.90 -26.48 -0.16 -1.05 16 23 C -0.12 -0.80 5.90 -26.48 -0.16 -0.96 16 24 C -0.06 -0.38 6.30 -27.63 -0.17 -0.56 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 29 H 0.06 1.33 8.13 -51.93 -0.42 0.90 16 30 H 0.12 1.29 7.87 -51.93 -0.41 0.88 16 31 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.67 7.94 -51.93 -0.41 0.25 16 34 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 331.02 15.07 4.99 4.99 Total: -1.00 -34.69 331.02 -8.97 -43.66 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -7.07 Total: -3.26 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.58 Total: -8.49 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 1.41 Total: -34.69 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.70 Total: -18.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.69 -8.97 -43.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777079076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.055 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds