Wall clock time and date at job start Tue Mar 31 2020 00:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47099 * 269.99891 * 3 2 1 5 5 H 1.48499 * 109.46984 * 29.99675 * 3 2 1 6 6 H 1.48493 * 109.47552 * 149.99793 * 3 2 1 7 7 C 1.37874 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00103 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47473 * 180.02562 * 9 7 2 11 11 O 1.45202 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.34230 * 116.99836 * 180.02562 * 11 10 9 13 13 O 1.20833 * 119.99930 * 359.97438 * 12 11 10 14 14 C 1.50697 * 120.00262 * 180.27336 * 12 11 10 15 15 C 1.50693 * 109.47486 * 179.72204 * 14 12 11 16 16 N 1.31076 * 125.95831 * 269.68913 * 15 14 12 17 17 N 1.40300 * 108.27109 * 179.91147 * 16 15 14 18 18 H 0.96992 * 126.09223 * 180.09539 * 17 16 15 19 19 C 1.34325 * 107.81284 * 0.30955 * 17 16 15 20 20 C 1.35754 * 107.84750 * 359.86260 * 19 17 16 21 21 C 1.50837 * 124.11350 * 179.83007 * 20 19 17 22 22 C 1.53370 * 108.38021 * 343.46704 * 21 20 19 23 23 C 1.53118 * 109.50653 * 49.93971 * 22 21 20 24 24 C 1.50825 * 128.03327 * 179.90872 * 19 17 16 25 25 H 0.97002 * 119.99980 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46554 * 59.99554 * 9 7 2 27 27 H 1.09002 * 109.46697 * 300.00692 * 9 7 2 28 28 H 1.08998 * 109.47242 * 59.99838 * 10 9 7 29 29 H 1.09004 * 109.46797 * 299.99655 * 10 9 7 30 30 H 1.09004 * 109.46801 * 299.72165 * 14 12 11 31 31 H 1.09000 * 109.47461 * 59.71633 * 14 12 11 32 32 H 1.09003 * 109.68298 * 103.19344 * 21 20 19 33 33 H 1.09001 * 109.68720 * 223.75413 * 21 20 19 34 34 H 1.09000 * 109.46810 * 289.93324 * 22 21 20 35 35 H 1.08993 * 109.46686 * 169.94994 * 22 21 20 36 36 H 1.09001 * 109.45837 * 169.70927 * 23 22 21 37 37 H 1.08991 * 109.45850 * 49.72886 * 23 22 21 38 38 H 1.09002 * 109.68039 * 283.13268 * 24 19 17 39 39 H 1.08996 * 109.68519 * 43.68581 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5192 -4.9195 0.0012 12 6 2.2503 -6.0453 0.0027 13 8 3.4569 -5.9820 0.0041 14 6 1.5662 -7.3880 -0.0040 15 6 2.6040 -8.4806 -0.0076 16 7 3.1312 -9.0379 -1.0704 17 7 4.0544 -10.0059 -0.6474 18 1 4.5930 -10.5716 -1.2224 19 6 4.0560 -10.0129 0.6959 20 6 3.1661 -9.0786 1.1179 21 6 2.8741 -8.7825 2.5678 22 6 3.4018 -9.9470 3.4150 23 6 4.8492 -10.2522 3.0195 24 6 4.8765 -10.8779 1.6197 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8712 -3.6039 0.8922 29 1 2.8725 -3.6047 -0.8878 30 1 0.9424 -7.4824 0.8849 31 1 0.9444 -7.4746 -0.8950 32 1 3.3730 -7.8590 2.8616 33 1 1.7984 -8.6814 2.7124 34 1 2.7849 -10.8292 3.2442 35 1 3.3630 -9.6755 4.4698 36 1 5.2825 -10.9486 3.7373 37 1 5.4270 -9.3281 3.0157 38 1 4.4512 -11.8809 1.6574 39 1 5.9041 -10.9277 1.2598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777079076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:13 Heat of formation + Delta-G solvation = -65.151354 kcal Electronic energy + Delta-G solvation = -20970.687432 eV Core-core repulsion = 17684.818005 eV Total energy + Delta-G solvation = -3285.869427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.64623 -41.31459 -37.77419 -37.35793 -35.45157 -34.65567 -32.43476 -31.18170 -30.37566 -29.50836 -27.00825 -24.45301 -23.61321 -22.96853 -22.47798 -20.68159 -19.68224 -19.03767 -18.54250 -18.16716 -17.59419 -17.26158 -16.50842 -16.20129 -15.40854 -15.08674 -14.96650 -14.70452 -14.47281 -14.38154 -14.25666 -13.98716 -13.86160 -13.28278 -13.02458 -12.96302 -12.82159 -12.59033 -12.56380 -11.89325 -11.78168 -11.69875 -11.53930 -11.49452 -11.45899 -11.39982 -11.36239 -10.61249 -10.37984 -9.25782 -8.27021 -6.40291 0.78060 1.18516 1.36822 1.42446 1.42887 1.54584 1.83606 2.12684 2.41859 3.07228 3.41386 3.65126 3.80589 3.93803 4.03855 4.11265 4.21624 4.26424 4.30986 4.34407 4.47716 4.58827 4.67447 4.69304 4.78052 4.79024 5.02207 5.08054 5.21241 5.26628 5.30906 5.40213 5.47150 5.50290 5.53439 5.65578 5.74864 6.06744 6.40824 6.64076 6.71106 6.75772 7.29351 8.85638 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031911 B = 0.003033 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.222366 B = 9229.054126 C = 9473.734176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.092 3.908 11 O -0.361 6.361 12 C 0.461 3.539 13 O -0.540 6.540 14 C -0.029 4.029 15 C 0.080 3.920 16 N -0.322 5.322 17 N -0.461 5.461 18 H 0.450 0.550 19 C 0.092 3.908 20 C -0.244 4.244 21 C -0.048 4.048 22 C -0.114 4.114 23 C -0.115 4.115 24 C -0.053 4.053 25 H 0.268 0.732 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.155 0.845 31 H 0.136 0.864 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.109 0.891 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 -25.859 6.086 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.278 6.278 12 C 0.305 3.695 13 O -0.430 6.430 14 C -0.067 4.067 15 C -0.085 4.085 16 N -0.146 5.146 17 N -0.170 5.170 18 H 0.296 0.704 19 C -0.039 4.039 20 C -0.255 4.255 21 C -0.087 4.087 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.091 4.091 25 H 0.077 0.923 26 H 0.025 0.975 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.172 0.828 31 H 0.154 0.846 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.487 -25.708 4.804 27.204 hybrid contribution 0.602 1.024 0.056 1.190 sum 8.090 -24.683 4.860 26.426 Atomic orbital electron populations 1.70089 1.07768 1.28310 1.50312 1.25952 0.95858 1.03357 0.94036 0.85325 0.78550 0.77786 0.78651 1.19621 1.20189 1.18787 1.21374 0.93639 0.91342 1.52625 0.91901 1.18978 0.94295 0.90438 0.96853 1.23142 0.95096 0.79193 1.00730 1.86504 1.42391 1.15644 1.83254 1.24083 0.86374 0.87431 0.71620 1.90630 1.17261 1.88473 1.46653 1.19697 0.95443 0.82222 1.09376 1.21399 0.98340 0.97196 0.91564 1.77341 1.08087 1.06340 1.22853 1.45914 1.34014 1.31531 1.05512 0.70359 1.21515 0.98516 0.99085 0.84772 1.20068 1.05133 1.03505 0.96832 1.20100 1.01501 0.98694 0.88365 1.21592 0.96244 0.97787 0.99553 1.21593 0.97228 1.01241 0.95270 1.20549 0.98711 0.97525 0.92334 0.92273 0.97489 0.97145 0.92224 0.92769 0.82766 0.84564 0.93077 0.90175 0.90679 0.90200 0.88341 0.92935 0.87308 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -31.95 9.11 25.60 0.23 -31.72 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.73 5.35 29.85 0.16 1.89 16 10 C 0.09 4.30 5.40 71.98 0.39 4.69 16 11 O -0.36 -15.01 10.22 -51.41 -0.53 -15.53 16 12 C 0.46 17.02 7.95 71.23 0.57 17.59 16 13 O -0.54 -23.38 15.78 21.94 0.35 -23.04 16 14 C -0.03 -0.76 6.24 29.10 0.18 -0.58 16 15 C 0.08 2.27 5.71 42.92 0.24 2.51 16 16 N -0.32 -9.53 12.71 -47.63 -0.61 -10.14 16 17 N -0.46 -9.97 7.34 -47.98 -0.35 -10.32 16 18 H 0.45 6.44 8.96 -213.20 -1.91 4.53 16 19 C 0.09 1.83 7.08 41.64 0.29 2.12 16 20 C -0.24 -5.94 5.91 -20.14 -0.12 -6.06 16 21 C -0.05 -0.95 6.05 30.02 0.18 -0.77 16 22 C -0.11 -1.48 5.90 30.76 0.18 -1.29 16 23 C -0.12 -1.30 5.90 30.76 0.18 -1.12 16 24 C -0.05 -0.57 6.30 30.01 0.19 -0.38 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 29 H 0.05 2.56 8.13 -2.38 -0.02 2.54 16 30 H 0.15 3.04 7.87 -2.38 -0.02 3.02 16 31 H 0.14 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.39 7.94 -2.39 -0.02 1.37 16 34 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -75.90 331.02 3.47 -72.44 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.85 Total: 8.28 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 3.15 Total: -12.26 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -0.67 Total: -76.09 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.18 Total: -38.57 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.90 3.47 -72.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777079076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.287 kcal (2) G-P(sol) polarization free energy of solvation -75.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds