Wall clock time and date at job start Mon Mar 30 2020 23:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00657 * 2 1 4 4 H 1.09007 * 109.46784 * 29.99745 * 3 2 1 5 5 C 1.52994 * 109.47162 * 269.99647 * 3 2 1 6 6 C 1.53000 * 109.47563 * 149.99581 * 3 2 1 7 7 O 1.45198 * 109.46926 * 64.99679 * 6 3 2 8 8 C 1.34230 * 116.99860 * 180.02562 * 7 6 3 9 9 O 1.20825 * 120.00303 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.99840 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46845 * 179.97438 * 10 8 7 12 12 C 1.37630 * 120.13156 * 264.99818 * 11 10 8 13 13 C 1.38610 * 120.25206 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.50035 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.24959 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.12471 * 84.72663 * 11 10 8 17 17 C 1.41398 * 120.24312 * 359.97438 * 16 11 10 18 18 H 1.07999 * 120.00339 * 333.89897 * 17 16 11 19 19 C 1.39952 * 119.99779 * 153.90037 * 17 16 11 20 20 N 1.30817 * 119.99956 * 343.70601 * 19 17 16 21 21 Si 1.86797 * 119.99651 * 163.70694 * 19 17 16 22 22 H 1.48494 * 109.47474 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46963 * 120.00040 * 21 19 17 24 24 H 1.48500 * 109.46769 * 239.99693 * 21 19 17 25 25 H 1.09000 * 109.46969 * 300.00458 * 1 2 3 26 26 H 1.09001 * 109.46296 * 59.99729 * 1 2 3 27 27 H 1.08994 * 109.47487 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46987 * 59.99926 * 5 3 2 29 29 H 1.09002 * 109.47292 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47463 * 299.99981 * 5 3 2 31 31 H 1.09007 * 109.46802 * 305.00150 * 6 3 2 32 32 H 1.08997 * 109.47311 * 185.00156 * 6 3 2 33 33 H 1.08999 * 109.46840 * 60.00146 * 10 8 7 34 34 H 1.08997 * 109.46960 * 299.99582 * 10 8 7 35 35 H 1.07999 * 119.87266 * 0.02562 * 12 11 10 36 36 H 1.07999 * 119.75361 * 180.02562 * 13 12 11 37 37 H 1.08003 * 119.88163 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.12880 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00500 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2179 1.7711 -1.4424 6 6 3.3590 1.2631 0.7213 7 8 4.2830 0.4310 -0.0284 8 6 5.5197 0.2887 0.4736 9 8 5.8201 0.8407 1.5055 10 6 6.5336 -0.5596 -0.2501 11 6 7.8315 -0.5541 0.5159 12 6 8.8265 0.3365 0.1827 13 6 10.0210 0.3441 0.8859 14 6 10.2282 -0.5435 1.9308 15 6 9.2478 -1.4433 2.2807 16 6 8.0284 -1.4556 1.5781 17 6 7.0108 -2.3708 1.9335 18 1 5.9777 -2.1389 1.7210 19 6 7.3426 -3.5772 2.5605 20 7 8.5769 -4.0096 2.5353 21 14 6.0227 -4.5698 3.4334 22 1 4.7185 -3.8692 3.3175 23 1 5.9195 -5.9132 2.8089 24 1 6.3807 -4.7166 4.8670 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.2571 1.8013 -1.9563 29 1 2.6610 2.7671 -1.4425 30 1 2.8831 1.0772 -1.9563 31 1 3.2240 0.8474 1.7199 32 1 3.7610 2.2732 0.7995 33 1 6.6996 -0.1550 -1.2485 34 1 6.1623 -1.5814 -0.3291 35 1 8.6757 1.0325 -0.6291 36 1 10.7962 1.0466 0.6179 37 1 11.1629 -0.5291 2.4716 38 1 9.4114 -2.1341 3.0946 39 1 8.8070 -4.8456 2.9702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782359372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:43 Heat of formation + Delta-G solvation = -123.207274 kcal Electronic energy + Delta-G solvation = -21574.053208 eV Core-core repulsion = 18253.373536 eV Total energy + Delta-G solvation = -3320.679672 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90426 -38.34432 -37.49924 -35.68587 -33.62432 -32.25882 -31.65376 -29.46897 -27.60729 -26.89223 -26.09961 -24.98236 -21.83673 -20.94577 -20.67290 -19.31280 -17.26808 -17.17566 -16.59204 -16.04606 -15.83564 -15.36545 -15.08818 -14.72297 -14.42789 -13.79804 -13.60819 -13.20336 -12.84420 -12.74520 -12.59062 -12.32937 -11.81647 -11.76269 -11.55493 -11.42831 -11.17517 -11.05883 -10.98083 -10.96136 -10.68277 -10.37095 -10.19230 -9.74399 -9.65836 -9.49098 -9.37029 -9.15799 -7.34082 -7.31056 -6.73674 -4.35106 2.72507 2.90061 3.03461 3.10050 3.17118 3.27502 3.43159 3.62895 3.96515 4.66187 4.67592 4.88821 4.96399 5.16643 5.21204 5.40344 5.50672 5.53487 5.63149 5.65437 5.75619 5.83076 6.02204 6.11860 6.20092 6.28566 6.45483 6.50877 6.77008 7.02644 7.09297 7.10407 7.28983 7.41075 7.64182 7.90730 8.06047 8.12237 8.30582 8.54675 8.65577 8.91100 9.00101 10.20318 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.005642 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.591769 B = 4961.477061 C = 6509.099221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.088 3.912 4 H 0.076 0.924 5 C -0.173 4.173 6 C 0.068 3.932 7 O -0.355 6.355 8 C 0.458 3.542 9 O -0.496 6.496 10 C -0.041 4.041 11 C -0.194 4.194 12 C -0.077 4.077 13 C -0.240 4.240 14 C -0.105 4.105 15 C -0.159 4.159 16 C 0.130 3.870 17 C -0.457 4.457 18 H 0.075 0.925 19 C 0.078 3.922 20 N -0.793 5.793 21 Si 0.903 3.097 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.272 1.272 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.097 6.544 -5.091 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.293 6.293 3 C 0.030 3.970 4 H 0.094 0.906 5 C -0.230 4.230 6 C -0.007 4.007 7 O -0.273 6.273 8 C 0.301 3.699 9 O -0.382 6.382 10 C -0.078 4.078 11 C -0.196 4.196 12 C -0.095 4.095 13 C -0.260 4.260 14 C -0.123 4.123 15 C -0.178 4.178 16 C 0.128 3.872 17 C -0.486 4.486 18 H 0.093 0.907 19 C -0.140 4.140 20 N -0.418 5.418 21 Si 0.727 3.273 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.197 1.197 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.777 6.355 -4.691 14.181 hybrid contribution -0.773 -0.156 0.618 1.002 sum -12.550 6.198 -4.073 14.578 Atomic orbital electron populations 1.22801 0.81504 1.02850 0.99611 1.88082 1.19148 1.27021 1.95003 1.22244 0.92753 0.85347 0.96619 0.90635 1.22215 1.02384 1.01985 0.96453 1.23004 0.87157 0.95042 0.95479 1.86574 1.23174 1.65018 1.52580 1.24481 0.81113 0.79747 0.84559 1.90631 1.79040 1.45100 1.23398 1.19975 0.90740 0.99662 0.97470 1.19073 0.94136 1.04952 1.01392 1.20314 0.94045 0.96869 0.98298 1.20305 0.98156 1.04687 1.02833 1.20699 0.97773 0.96522 0.97332 1.21306 0.94713 0.99979 1.01775 1.17360 0.92340 0.89631 0.87911 1.19547 0.94621 1.00680 1.33752 0.90677 1.25882 0.96075 0.97887 0.94154 1.69821 1.19181 1.19332 1.33463 0.86339 0.81955 0.79372 0.79630 1.18337 1.19893 1.19695 0.94195 0.94193 0.89581 0.92630 0.91670 0.90412 0.90825 0.90332 0.89458 0.87437 0.89579 0.89549 0.89483 0.86427 0.90934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.82 101.05 1.09 1.36 16 2 O -0.37 -5.11 10.32 -38.80 -0.40 -5.51 16 3 C 0.09 1.04 3.13 -26.73 -0.08 0.96 16 4 H 0.08 0.69 7.79 -51.93 -0.40 0.28 16 5 C -0.17 -1.82 9.33 37.15 0.35 -1.47 16 6 C 0.07 1.01 5.33 37.16 0.20 1.21 16 7 O -0.36 -6.39 9.31 -42.02 -0.39 -6.78 16 8 C 0.46 9.57 7.57 36.01 0.27 9.84 16 9 O -0.50 -11.90 15.78 -18.75 -0.30 -12.20 16 10 C -0.04 -0.85 5.29 -29.03 -0.15 -1.00 16 11 C -0.19 -4.73 4.43 -103.91 -0.46 -5.19 16 12 C -0.08 -1.78 9.66 -39.67 -0.38 -2.16 16 13 C -0.24 -5.58 10.05 -39.29 -0.39 -5.98 16 14 C -0.10 -2.55 10.02 -39.66 -0.40 -2.95 16 15 C -0.16 -4.24 8.69 -38.87 -0.34 -4.58 16 16 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 17 C -0.46 -12.21 8.14 -37.74 -0.31 -12.52 16 18 H 0.08 1.99 6.67 -52.49 -0.35 1.64 16 19 C 0.08 1.98 5.16 -17.34 -0.09 1.89 16 20 N -0.79 -20.57 10.96 55.55 0.61 -19.96 16 21 Si 0.90 19.23 29.59 -169.99 -5.03 14.20 16 22 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 25 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 26 H 0.04 0.31 7.87 -51.93 -0.41 -0.10 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.49 7.87 -51.93 -0.41 0.08 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.96 7.55 -51.93 -0.39 0.56 16 31 H 0.07 1.17 8.13 -51.92 -0.42 0.75 16 32 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.09 1.51 8.05 -51.93 -0.42 1.09 16 34 H 0.11 2.22 7.08 -51.93 -0.37 1.86 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.12 3.23 6.21 -52.48 -0.33 2.90 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -30.83 332.66 -7.38 -38.20 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.59 Total: 4.73 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -1.29 Total: -17.68 kcal Atomic # 7 Polarization: -20.57 SS G_CDS: 0.61 Total: -19.96 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -1.09 Total: -24.50 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.83 -7.38 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782359372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.006 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds