Wall clock time and date at job start Mon Mar 30 2020 23:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 114.00657 * 2 1 4 4 H 1.09007 * 109.46784 * 29.99745 * 3 2 1 5 5 C 1.52994 * 109.47162 * 269.99647 * 3 2 1 6 6 C 1.53000 * 109.47563 * 149.99581 * 3 2 1 7 7 O 1.45198 * 109.46926 * 64.99679 * 6 3 2 8 8 C 1.34230 * 116.99860 * 180.02562 * 7 6 3 9 9 O 1.20825 * 120.00303 * 0.02562 * 8 7 6 10 10 C 1.50708 * 119.99840 * 180.02562 * 8 7 6 11 11 C 1.50703 * 109.46845 * 179.97438 * 10 8 7 12 12 C 1.37630 * 120.13156 * 264.99818 * 11 10 8 13 13 C 1.38610 * 120.25206 * 179.97438 * 12 11 10 14 14 C 1.38654 * 120.50035 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.24959 * 0.02562 * 14 13 12 16 16 C 1.40704 * 120.12471 * 84.72663 * 11 10 8 17 17 C 1.41398 * 120.24312 * 359.97438 * 16 11 10 18 18 H 1.07999 * 120.00339 * 333.89897 * 17 16 11 19 19 C 1.39952 * 119.99779 * 153.90037 * 17 16 11 20 20 N 1.30817 * 119.99956 * 343.70601 * 19 17 16 21 21 Si 1.86797 * 119.99651 * 163.70694 * 19 17 16 22 22 H 1.48494 * 109.47474 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46963 * 120.00040 * 21 19 17 24 24 H 1.48500 * 109.46769 * 239.99693 * 21 19 17 25 25 H 1.09000 * 109.46969 * 300.00458 * 1 2 3 26 26 H 1.09001 * 109.46296 * 59.99729 * 1 2 3 27 27 H 1.08994 * 109.47487 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46987 * 59.99926 * 5 3 2 29 29 H 1.09002 * 109.47292 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47463 * 299.99981 * 5 3 2 31 31 H 1.09007 * 109.46802 * 305.00150 * 6 3 2 32 32 H 1.08997 * 109.47311 * 185.00156 * 6 3 2 33 33 H 1.08999 * 109.46840 * 60.00146 * 10 8 7 34 34 H 1.08997 * 109.46960 * 299.99582 * 10 8 7 35 35 H 1.07999 * 119.87266 * 0.02562 * 12 11 10 36 36 H 1.07999 * 119.75361 * 180.02562 * 13 12 11 37 37 H 1.08003 * 119.88163 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.12880 * 179.97438 * 15 14 13 39 39 H 0.97000 * 120.00500 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 1 1.3451 1.9993 0.5138 5 6 2.2179 1.7711 -1.4424 6 6 3.3590 1.2631 0.7213 7 8 4.2830 0.4310 -0.0284 8 6 5.5197 0.2887 0.4736 9 8 5.8201 0.8407 1.5055 10 6 6.5336 -0.5596 -0.2501 11 6 7.8315 -0.5541 0.5159 12 6 8.8265 0.3365 0.1827 13 6 10.0210 0.3441 0.8859 14 6 10.2282 -0.5435 1.9308 15 6 9.2478 -1.4433 2.2807 16 6 8.0284 -1.4556 1.5781 17 6 7.0108 -2.3708 1.9335 18 1 5.9777 -2.1389 1.7210 19 6 7.3426 -3.5772 2.5605 20 7 8.5769 -4.0096 2.5353 21 14 6.0227 -4.5698 3.4334 22 1 4.7185 -3.8692 3.3175 23 1 5.9195 -5.9132 2.8089 24 1 6.3807 -4.7166 4.8670 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.2571 1.8013 -1.9563 29 1 2.6610 2.7671 -1.4425 30 1 2.8831 1.0772 -1.9563 31 1 3.2240 0.8474 1.7199 32 1 3.7610 2.2732 0.7995 33 1 6.6996 -0.1550 -1.2485 34 1 6.1623 -1.5814 -0.3291 35 1 8.6757 1.0325 -0.6291 36 1 10.7962 1.0466 0.6179 37 1 11.1629 -0.5291 2.4716 38 1 9.4114 -2.1341 3.0946 39 1 8.8070 -4.8456 2.9702 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782359372.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:42 Heat of formation + Delta-G solvation = -140.042452 kcal Electronic energy + Delta-G solvation = -21574.783236 eV Core-core repulsion = 18253.373536 eV Total energy + Delta-G solvation = -3321.409700 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.46086 -39.59978 -39.06849 -37.21776 -35.53352 -33.67959 -33.00890 -31.38166 -29.11241 -27.93930 -27.24830 -26.77740 -23.22177 -22.83081 -21.95603 -21.06186 -19.10433 -18.68415 -17.84728 -17.55422 -17.03948 -17.00702 -16.24512 -16.13583 -15.86488 -15.48354 -15.40959 -14.42106 -14.33288 -14.10001 -13.84660 -13.58266 -13.40036 -13.31824 -12.95091 -12.84523 -12.74897 -12.65941 -12.52760 -12.36147 -12.13365 -11.87089 -11.60026 -11.35729 -11.33801 -11.22995 -11.05256 -10.60676 -9.25194 -9.22656 -8.63012 -6.33764 0.91511 1.08429 1.34483 1.39009 1.47792 1.50480 1.93221 2.18797 2.75460 2.77661 3.68215 3.74868 3.93890 4.01606 4.17867 4.28988 4.35535 4.44412 4.50210 4.53332 4.57288 4.62536 4.70316 4.77783 4.80666 4.89388 4.93521 5.01031 5.17088 5.34040 5.34975 5.48997 5.51840 5.74726 6.01000 6.13345 6.19685 6.26775 6.38797 6.70273 6.94841 6.96826 7.06987 8.33507 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015053 B = 0.005642 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.591769 B = 4961.477061 C = 6509.099221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.411 6.411 3 C 0.090 3.910 4 H 0.109 0.891 5 C -0.169 4.169 6 C 0.058 3.942 7 O -0.352 6.352 8 C 0.465 3.535 9 O -0.534 6.534 10 C -0.042 4.042 11 C -0.201 4.201 12 C -0.084 4.084 13 C -0.240 4.240 14 C -0.113 4.113 15 C -0.191 4.191 16 C 0.098 3.902 17 C -0.486 4.486 18 H 0.066 0.934 19 C 0.039 3.961 20 N -0.822 5.822 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.265 1.265 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.399 7.657 -6.201 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.331 6.331 3 C 0.033 3.967 4 H 0.127 0.873 5 C -0.227 4.227 6 C -0.016 4.016 7 O -0.269 6.269 8 C 0.310 3.690 9 O -0.423 6.423 10 C -0.079 4.079 11 C -0.203 4.203 12 C -0.102 4.102 13 C -0.259 4.259 14 C -0.131 4.131 15 C -0.211 4.211 16 C 0.096 3.904 17 C -0.515 4.515 18 H 0.084 0.916 19 C -0.176 4.176 20 N -0.448 5.448 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.183 1.183 24 H -0.189 1.189 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.091 7.469 -5.826 16.158 hybrid contribution -0.379 -0.398 0.901 1.056 sum -13.470 7.071 -4.925 15.991 Atomic orbital electron populations 1.23003 0.79413 1.03719 1.01173 1.88026 1.21583 1.28192 1.95264 1.22362 0.91293 0.85587 0.97491 0.87338 1.22189 1.03110 1.02024 0.95341 1.23388 0.88245 0.94930 0.95031 1.86553 1.22337 1.65394 1.52577 1.24370 0.81933 0.78954 0.83759 1.90613 1.79918 1.46868 1.24916 1.19987 0.89368 0.99755 0.98759 1.19484 0.95963 1.04152 1.00693 1.20760 0.93549 0.96889 0.99044 1.20743 0.99032 1.04351 1.01794 1.20997 0.98076 0.96119 0.97924 1.21309 0.96088 1.01308 1.02379 1.17731 0.92706 0.90860 0.89150 1.19642 0.94202 1.01823 1.35860 0.91603 1.26617 0.98151 0.98509 0.94324 1.69863 1.20704 1.20075 1.34123 0.85358 0.78703 0.78218 0.78714 1.19068 1.18338 1.18933 0.92799 0.92368 0.89233 0.90658 0.90237 0.92600 0.92536 0.88940 0.85699 0.87981 0.86084 0.86286 0.87361 0.88342 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.82 113.37 1.23 1.60 16 2 O -0.41 -10.67 10.32 -145.56 -1.50 -12.17 16 3 C 0.09 1.95 3.13 30.59 0.10 2.04 16 4 H 0.11 1.63 7.79 -2.38 -0.02 1.61 16 5 C -0.17 -3.14 9.33 71.98 0.67 -2.47 16 6 C 0.06 1.68 5.33 71.98 0.38 2.06 16 7 O -0.35 -12.47 9.31 -48.77 -0.45 -12.92 16 8 C 0.47 19.39 7.57 71.24 0.54 19.93 16 9 O -0.53 -25.94 15.78 21.97 0.35 -25.59 16 10 C -0.04 -1.70 5.29 29.11 0.15 -1.54 16 11 C -0.20 -9.80 4.43 -19.40 -0.09 -9.88 16 12 C -0.08 -3.75 9.66 22.21 0.21 -3.54 16 13 C -0.24 -10.71 10.05 22.46 0.23 -10.49 16 14 C -0.11 -5.48 10.02 22.22 0.22 -5.26 16 15 C -0.19 -10.56 8.69 22.73 0.20 -10.36 16 16 C 0.10 5.42 5.56 -21.29 -0.12 5.30 16 17 C -0.49 -26.92 8.14 23.46 0.19 -26.73 16 18 H 0.07 3.63 6.67 -2.91 -0.02 3.61 16 19 C 0.04 2.03 5.16 85.26 0.44 2.47 16 20 N -0.82 -43.88 10.96 21.83 0.24 -43.64 16 21 Si 0.97 40.24 29.59 68.60 2.03 42.27 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 26 H 0.06 0.74 7.87 -2.39 -0.02 0.72 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.07 1.10 7.87 -2.38 -0.02 1.08 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.28 7.55 -2.39 -0.02 1.27 16 31 H 0.06 1.82 8.13 -2.38 -0.02 1.80 16 32 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 33 H 0.13 4.05 8.05 -2.39 -0.02 4.03 16 34 H 0.10 4.28 7.08 -2.39 -0.02 4.26 16 35 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 36 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.11 4.64 8.06 -2.91 -0.02 4.61 16 38 H 0.10 5.68 6.21 -2.91 -0.02 5.66 16 39 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 Total: -1.00 -68.46 332.66 6.05 -62.41 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 1.04 Total: 26.51 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 4.36 Total: -36.86 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.24 Total: -43.64 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -1.61 Total: -50.68 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -68.46 6.05 -62.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782359372.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.632 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds