Wall clock time and date at job start Mon Mar 30 2020 23:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00302 * 2 1 4 4 C 1.53000 * 109.47258 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47507 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.46992 * 305.00397 * 5 4 3 7 7 C 1.52994 * 109.47539 * 184.99444 * 5 4 3 8 8 O 1.45201 * 109.46879 * 64.99696 * 5 4 3 9 9 C 1.34803 * 117.00115 * 210.00518 * 8 5 4 10 10 O 1.21531 * 119.99796 * 359.97438 * 9 8 5 11 11 C 1.47287 * 120.00467 * 180.02562 * 9 8 5 12 12 C 1.39295 * 120.28592 * 357.17214 * 11 9 8 13 13 C 1.38203 * 120.08670 * 179.97438 * 12 11 9 14 14 C 1.38837 * 120.68287 * 0.02704 * 13 12 11 15 15 C 1.37600 * 120.58285 * 359.97268 * 14 13 12 16 16 C 1.40708 * 119.88616 * 359.74780 * 15 14 13 17 17 C 1.40861 * 120.33316 * 180.25670 * 16 15 14 18 18 H 1.07998 * 119.99909 * 214.91830 * 17 16 15 19 19 C 1.40299 * 120.00021 * 34.91525 * 17 16 15 20 20 N 1.30612 * 119.99736 * 9.91541 * 19 17 16 21 21 Si 1.86797 * 120.00094 * 189.91697 * 19 17 16 22 22 H 1.48503 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47280 * 119.99857 * 21 19 17 24 24 H 1.48501 * 109.47073 * 239.99792 * 21 19 17 25 25 H 1.09001 * 109.46813 * 300.00511 * 1 2 3 26 26 H 1.08996 * 109.46623 * 60.00396 * 1 2 3 27 27 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47590 * 59.99920 * 3 2 1 29 29 H 1.09005 * 109.46956 * 299.99664 * 3 2 1 30 30 H 1.08997 * 109.47492 * 59.99478 * 4 3 2 31 31 H 1.09007 * 109.47241 * 299.99655 * 4 3 2 32 32 H 1.08995 * 109.47272 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47245 * 300.00487 * 7 5 4 34 34 H 1.09007 * 109.46659 * 60.00301 * 7 5 4 35 35 H 1.08007 * 119.95523 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.65360 * 179.97438 * 13 12 11 37 37 H 1.07992 * 119.70636 * 179.97438 * 14 13 12 38 38 H 1.07996 * 120.05469 * 180.02562 * 15 14 13 39 39 H 0.96998 * 119.99859 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5822 -0.0013 6 1 3.7669 3.1537 -0.8430 7 6 5.6780 2.4636 -0.1275 8 8 3.8268 3.2600 1.2394 9 6 3.7225 4.6033 1.1940 10 8 3.9039 5.1917 0.1462 11 6 3.3899 5.3579 2.4143 12 6 3.1241 4.6859 3.6052 13 6 2.8130 5.3981 4.7480 14 6 2.7604 6.7853 4.7259 15 6 3.0180 7.4773 3.5648 16 6 3.3430 6.7768 2.3886 17 6 3.6137 7.4759 1.1961 18 1 3.3177 7.0572 0.2456 19 6 4.2678 8.7162 1.2430 20 7 4.7970 9.1335 2.3619 21 14 4.3818 9.7709 -0.2945 22 1 3.7082 9.0772 -1.4217 23 1 3.7189 11.0769 -0.0493 24 1 5.8095 9.9967 -0.6352 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.8568 0.6437 -0.8908 31 1 3.8575 0.6435 0.8892 32 1 6.1214 3.4593 -0.1284 33 1 6.0690 1.8921 0.7142 34 1 5.9266 1.9547 -1.0589 35 1 3.1613 3.6069 3.6355 36 1 2.6078 4.8700 5.6675 37 1 2.5153 7.3260 5.6281 38 1 2.9751 8.5564 3.5574 39 1 5.2488 9.9912 2.3945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782605094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:06 Heat of formation + Delta-G solvation = -127.537385 kcal Electronic energy + Delta-G solvation = -21626.719237 eV Core-core repulsion = 18305.851797 eV Total energy + Delta-G solvation = -3320.867440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.57357 -37.97836 -37.31833 -35.65353 -33.82892 -33.07837 -30.11753 -29.67876 -29.26361 -26.39946 -25.63091 -23.57820 -22.67264 -21.21430 -20.57224 -19.60509 -17.50944 -16.90586 -16.42047 -15.91217 -15.60305 -15.29952 -15.17742 -14.72708 -14.27161 -13.78095 -13.54174 -13.17857 -12.87322 -12.75392 -12.58390 -12.43268 -11.80049 -11.68492 -11.47952 -11.40027 -11.21243 -11.11279 -11.05946 -10.68175 -10.64132 -10.51852 -10.20550 -9.89925 -9.72967 -9.64593 -9.36728 -8.75142 -7.67621 -7.45061 -6.91768 -4.52410 2.18432 2.75749 3.04479 3.13579 3.16380 3.54955 3.72463 3.88543 3.90213 4.57763 4.98241 5.09899 5.13740 5.27133 5.32083 5.46990 5.51242 5.53134 5.57619 5.60651 5.75161 5.93294 5.95993 6.10399 6.19387 6.23781 6.33591 6.38062 6.62989 6.90917 7.02349 7.11131 7.12697 7.32660 7.46426 7.59558 7.86689 7.91968 8.11332 8.55613 8.69723 8.76605 9.10105 10.03492 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.005138 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.540333 B = 5447.869282 C = 6255.063570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.059 3.941 4 C -0.111 4.111 5 C 0.088 3.912 6 H 0.081 0.919 7 C -0.165 4.165 8 O -0.364 6.364 9 C 0.504 3.496 10 O -0.517 6.517 11 C -0.251 4.251 12 C -0.037 4.037 13 C -0.247 4.247 14 C -0.090 4.090 15 C -0.149 4.149 16 C 0.148 3.852 17 C -0.422 4.422 18 H 0.111 0.889 19 C 0.070 3.930 20 N -0.785 5.785 21 Si 0.917 3.083 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.273 1.273 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -9.615 -3.080 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.315 6.315 3 C -0.018 4.018 4 C -0.148 4.148 5 C 0.032 3.968 6 H 0.099 0.901 7 C -0.223 4.223 8 O -0.283 6.283 9 C 0.355 3.645 10 O -0.408 6.408 11 C -0.254 4.254 12 C -0.055 4.055 13 C -0.267 4.267 14 C -0.109 4.109 15 C -0.168 4.168 16 C 0.144 3.856 17 C -0.449 4.449 18 H 0.129 0.871 19 C -0.150 4.150 20 N -0.410 5.410 21 Si 0.741 3.259 22 H -0.179 1.179 23 H -0.197 1.197 24 H -0.198 1.198 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.136 0.864 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.890 -9.432 -3.321 10.409 hybrid contribution 0.059 0.797 -0.582 0.989 sum -2.830 -8.635 -3.903 9.890 Atomic orbital electron populations 1.22715 0.81177 1.02384 1.00182 1.87814 1.19652 1.28472 1.95526 1.22573 0.93914 0.84260 1.01006 1.21601 0.93421 0.95812 1.03957 1.22362 0.95326 0.91727 0.87359 0.90064 1.22136 0.94856 1.03191 1.02069 1.86665 1.82462 1.22753 1.36417 1.21367 0.74167 0.79239 0.89727 1.90698 1.48977 1.68527 1.32579 1.18769 1.22620 0.93162 0.90811 1.20841 0.94788 0.97781 0.92140 1.20365 1.14973 0.94037 0.97290 1.20854 0.99009 0.94064 0.96962 1.21288 1.03421 0.99446 0.92612 1.17466 0.86044 0.88850 0.93222 1.20391 1.28598 1.00022 0.95907 0.87135 1.26178 0.93508 0.97400 0.97884 1.69715 1.24442 1.19385 1.27460 0.86098 0.78965 0.79097 0.81750 1.17932 1.19686 1.19778 0.93906 0.94196 0.89857 0.92177 0.93425 0.89709 0.90077 0.91498 0.91820 0.91457 0.87961 0.88809 0.88860 0.86448 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.40 -5.37 10.70 -35.23 -0.38 -5.75 16 3 C 0.06 0.82 5.84 37.16 0.22 1.03 16 4 C -0.11 -1.47 5.30 -26.73 -0.14 -1.61 16 5 C 0.09 1.42 2.56 -26.73 -0.07 1.35 16 6 H 0.08 1.40 7.16 -51.93 -0.37 1.02 16 7 C -0.17 -2.39 9.55 37.15 0.35 -2.03 16 8 O -0.36 -7.24 8.67 -40.78 -0.35 -7.59 16 9 C 0.50 11.93 7.83 34.41 0.27 12.20 16 10 O -0.52 -13.16 12.77 -19.29 -0.25 -13.40 16 11 C -0.25 -6.25 5.92 -104.39 -0.62 -6.87 16 12 C -0.04 -0.83 9.60 -39.20 -0.38 -1.21 16 13 C -0.25 -5.32 10.03 -39.37 -0.39 -5.71 16 14 C -0.09 -2.01 10.01 -39.59 -0.40 -2.41 16 15 C -0.15 -3.71 8.62 -38.88 -0.34 -4.05 16 16 C 0.15 3.93 5.49 -106.53 -0.59 3.34 16 17 C -0.42 -11.33 7.78 -37.82 -0.29 -11.63 16 18 H 0.11 3.06 5.72 -52.49 -0.30 2.76 16 19 C 0.07 1.75 5.24 -17.30 -0.09 1.65 16 20 N -0.79 -19.86 11.23 55.57 0.62 -19.23 16 21 Si 0.92 19.04 29.57 -169.99 -5.03 14.01 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.91 7.82 -51.93 -0.41 0.50 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.10 2.06 7.60 -52.48 -0.40 1.66 16 36 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.12 2.97 6.68 -52.49 -0.35 2.62 16 39 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -28.75 331.75 -7.34 -36.09 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.61 Total: 5.37 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.35 Total: -14.49 kcal Atomic # 7 Polarization: -19.86 SS G_CDS: 0.62 Total: -19.23 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.98 Total: -26.74 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.75 -7.34 -36.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782605094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.448 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds