Wall clock time and date at job start Mon Mar 30 2020 23:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00302 * 2 1 4 4 C 1.53000 * 109.47258 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47507 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.46992 * 305.00397 * 5 4 3 7 7 C 1.52994 * 109.47539 * 184.99444 * 5 4 3 8 8 O 1.45201 * 109.46879 * 64.99696 * 5 4 3 9 9 C 1.34803 * 117.00115 * 210.00518 * 8 5 4 10 10 O 1.21531 * 119.99796 * 359.97438 * 9 8 5 11 11 C 1.47287 * 120.00467 * 180.02562 * 9 8 5 12 12 C 1.39295 * 120.28592 * 357.17214 * 11 9 8 13 13 C 1.38203 * 120.08670 * 179.97438 * 12 11 9 14 14 C 1.38837 * 120.68287 * 0.02704 * 13 12 11 15 15 C 1.37600 * 120.58285 * 359.97268 * 14 13 12 16 16 C 1.40708 * 119.88616 * 359.74780 * 15 14 13 17 17 C 1.40861 * 120.33316 * 180.25670 * 16 15 14 18 18 H 1.07998 * 119.99909 * 214.91830 * 17 16 15 19 19 C 1.40299 * 120.00021 * 34.91525 * 17 16 15 20 20 N 1.30612 * 119.99736 * 9.91541 * 19 17 16 21 21 Si 1.86797 * 120.00094 * 189.91697 * 19 17 16 22 22 H 1.48503 * 109.47181 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47280 * 119.99857 * 21 19 17 24 24 H 1.48501 * 109.47073 * 239.99792 * 21 19 17 25 25 H 1.09001 * 109.46813 * 300.00511 * 1 2 3 26 26 H 1.08996 * 109.46623 * 60.00396 * 1 2 3 27 27 H 1.09000 * 109.47305 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47590 * 59.99920 * 3 2 1 29 29 H 1.09005 * 109.46956 * 299.99664 * 3 2 1 30 30 H 1.08997 * 109.47492 * 59.99478 * 4 3 2 31 31 H 1.09007 * 109.47241 * 299.99655 * 4 3 2 32 32 H 1.08995 * 109.47272 * 179.97438 * 7 5 4 33 33 H 1.08994 * 109.47245 * 300.00487 * 7 5 4 34 34 H 1.09007 * 109.46659 * 60.00301 * 7 5 4 35 35 H 1.08007 * 119.95523 * 359.97438 * 12 11 9 36 36 H 1.08001 * 119.65360 * 179.97438 * 13 12 11 37 37 H 1.07992 * 119.70636 * 179.97438 * 14 13 12 38 38 H 1.07996 * 120.05469 * 180.02562 * 15 14 13 39 39 H 0.96998 * 119.99859 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1579 2.5822 -0.0013 6 1 3.7669 3.1537 -0.8430 7 6 5.6780 2.4636 -0.1275 8 8 3.8268 3.2600 1.2394 9 6 3.7225 4.6033 1.1940 10 8 3.9039 5.1917 0.1462 11 6 3.3899 5.3579 2.4143 12 6 3.1241 4.6859 3.6052 13 6 2.8130 5.3981 4.7480 14 6 2.7604 6.7853 4.7259 15 6 3.0180 7.4773 3.5648 16 6 3.3430 6.7768 2.3886 17 6 3.6137 7.4759 1.1961 18 1 3.3177 7.0572 0.2456 19 6 4.2678 8.7162 1.2430 20 7 4.7970 9.1335 2.3619 21 14 4.3818 9.7709 -0.2945 22 1 3.7082 9.0772 -1.4217 23 1 3.7189 11.0769 -0.0493 24 1 5.8095 9.9967 -0.6352 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6887 1.8464 0.8899 29 1 1.6887 1.8463 -0.8901 30 1 3.8568 0.6437 -0.8908 31 1 3.8575 0.6435 0.8892 32 1 6.1214 3.4593 -0.1284 33 1 6.0690 1.8921 0.7142 34 1 5.9266 1.9547 -1.0589 35 1 3.1613 3.6069 3.6355 36 1 2.6078 4.8700 5.6675 37 1 2.5153 7.3260 5.6281 38 1 2.9751 8.5564 3.5574 39 1 5.2488 9.9912 2.3945 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782605094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:43:05 Heat of formation + Delta-G solvation = -142.608729 kcal Electronic energy + Delta-G solvation = -21627.372779 eV Core-core repulsion = 18305.851797 eV Total energy + Delta-G solvation = -3321.520982 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27120 -39.32845 -38.79533 -37.33058 -35.65682 -34.45884 -31.93307 -31.45813 -30.45460 -27.52022 -27.28444 -25.10109 -24.05627 -22.97656 -22.04364 -21.27330 -19.38740 -18.57149 -17.63683 -17.27220 -17.06744 -16.82815 -16.59453 -16.11454 -15.92948 -15.38043 -14.99202 -14.59393 -14.50144 -14.21665 -14.11489 -13.75086 -13.47988 -13.10816 -12.93862 -12.88052 -12.54542 -12.52168 -12.43416 -12.35790 -12.14042 -11.98960 -11.81360 -11.52537 -11.41145 -11.18650 -10.67227 -10.60952 -9.51920 -9.32176 -8.76152 -6.47458 0.33476 0.97695 1.33536 1.46666 1.49030 1.99123 2.06625 2.18139 2.70268 2.70934 3.62004 3.84293 3.92333 4.02980 4.14695 4.28647 4.36179 4.40673 4.48539 4.50413 4.55594 4.58852 4.71708 4.79704 4.82464 4.85552 5.02680 5.04713 5.11326 5.16957 5.19797 5.26836 5.54027 5.69348 5.80093 6.00416 6.05586 6.14048 6.28261 6.63336 6.77546 6.87022 7.29250 8.21798 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.005138 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.540333 B = 5447.869282 C = 6255.063570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.060 3.940 4 C -0.100 4.100 5 C 0.080 3.920 6 H 0.067 0.933 7 C -0.161 4.161 8 O -0.360 6.360 9 C 0.506 3.494 10 O -0.544 6.544 11 C -0.276 4.276 12 C -0.039 4.039 13 C -0.238 4.238 14 C -0.083 4.083 15 C -0.174 4.174 16 C 0.121 3.879 17 C -0.460 4.460 18 H 0.090 0.910 19 C 0.034 3.966 20 N -0.813 5.813 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.253 1.253 24 H -0.265 1.265 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.106 0.894 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 -11.123 -2.589 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.017 4.017 4 C -0.137 4.137 5 C 0.025 3.975 6 H 0.085 0.915 7 C -0.218 4.218 8 O -0.279 6.279 9 C 0.357 3.643 10 O -0.437 6.437 11 C -0.279 4.279 12 C -0.057 4.057 13 C -0.257 4.257 14 C -0.102 4.102 15 C -0.193 4.193 16 C 0.117 3.883 17 C -0.488 4.488 18 H 0.108 0.892 19 C -0.182 4.182 20 N -0.438 5.438 21 Si 0.802 3.198 22 H -0.192 1.192 23 H -0.177 1.177 24 H -0.190 1.190 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.144 0.856 38 H 0.123 0.877 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.023 -10.964 -2.803 11.714 hybrid contribution 0.038 1.066 -0.650 1.249 sum -2.985 -9.899 -3.453 10.900 Atomic orbital electron populations 1.22946 0.79622 1.04065 1.00575 1.87784 1.21394 1.27898 1.95565 1.22496 0.94433 0.84549 1.00191 1.21556 0.92843 0.93755 1.05531 1.22748 0.96889 0.92628 0.85242 0.91517 1.22131 0.93162 1.02064 1.04451 1.86616 1.82008 1.20758 1.38503 1.21294 0.73563 0.80354 0.89080 1.90676 1.50066 1.69500 1.33455 1.19147 1.23024 0.93241 0.92464 1.21139 0.94033 0.99064 0.91513 1.20833 1.12682 0.93822 0.98364 1.21242 0.97033 0.94828 0.97085 1.21271 1.05437 0.99105 0.93515 1.17828 0.86538 0.89989 0.93925 1.20369 1.31208 1.01847 0.95372 0.89220 1.26868 0.92623 0.97870 1.00855 1.69726 1.25000 1.20183 1.28932 0.85171 0.79164 0.77858 0.77630 1.19155 1.17667 1.18965 0.93920 0.93436 0.87584 0.94039 0.93356 0.86946 0.89528 0.94439 0.90614 0.88068 0.85610 0.84874 0.85597 0.87690 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 11.01 113.37 1.25 1.70 16 2 O -0.41 -10.33 10.70 -148.98 -1.59 -11.92 16 3 C 0.06 1.60 5.84 71.98 0.42 2.02 16 4 C -0.10 -2.46 5.30 30.59 0.16 -2.30 16 5 C 0.08 2.53 2.56 30.59 0.08 2.61 16 6 H 0.07 2.32 7.16 -2.39 -0.02 2.31 16 7 C -0.16 -4.46 9.55 71.98 0.69 -3.78 16 8 O -0.36 -14.35 8.67 -57.15 -0.50 -14.85 16 9 C 0.51 24.63 7.83 70.20 0.55 25.18 16 10 O -0.54 -29.02 12.77 19.73 0.25 -28.77 16 11 C -0.28 -14.01 5.92 -19.71 -0.12 -14.13 16 12 C -0.04 -1.71 9.60 22.52 0.22 -1.49 16 13 C -0.24 -9.60 10.03 22.40 0.22 -9.38 16 14 C -0.08 -3.59 10.01 22.26 0.22 -3.37 16 15 C -0.17 -8.85 8.62 22.72 0.20 -8.65 16 16 C 0.12 6.63 5.49 -21.10 -0.12 6.51 16 17 C -0.46 -25.96 7.78 23.41 0.18 -25.78 16 18 H 0.09 5.30 5.72 -2.91 -0.02 5.28 16 19 C 0.03 1.77 5.24 85.38 0.45 2.22 16 20 N -0.81 -42.16 11.23 21.88 0.25 -41.91 16 21 Si 0.98 40.09 29.57 68.60 2.03 42.12 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 25 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.25 7.82 -2.39 -0.02 1.23 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.13 4.79 7.60 -2.91 -0.02 4.77 16 36 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.11 5.48 6.68 -2.91 -0.02 5.46 16 39 H 0.29 13.57 8.29 -92.71 -0.77 12.80 16 Total: -1.00 -64.38 331.75 5.88 -58.50 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 1.04 Total: 25.45 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 4.40 Total: -28.63 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.25 Total: -41.91 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -1.84 Total: -55.53 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -64.38 5.88 -58.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782605094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.106 kcal (2) G-P(sol) polarization free energy of solvation -64.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds