Wall clock time and date at job start Tue Mar 31 2020 00:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48499 * 109.46910 * 269.99690 * 3 2 1 5 5 H 1.48493 * 109.46946 * 29.99917 * 3 2 1 6 6 H 1.48501 * 109.46997 * 149.99927 * 3 2 1 7 7 C 1.37878 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47359 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99501 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00497 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99636 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46862 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46816 * 180.02562 * 15 14 12 17 17 N 1.46507 * 109.47241 * 180.02562 * 16 15 14 18 18 C 1.35763 * 119.62574 * 90.00014 * 17 16 15 19 19 C 1.35346 * 120.69997 * 180.27933 * 18 17 16 20 20 C 1.40202 * 119.94860 * 359.43664 * 19 18 17 21 21 C 1.36395 * 119.26120 * 0.57668 * 20 19 18 22 22 C 1.34664 * 119.61981 * 270.02413 * 17 16 15 23 23 O 1.22055 * 119.98569 * 359.97438 * 22 17 16 24 24 H 0.97001 * 119.99892 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46853 * 60.00365 * 9 7 2 26 26 H 1.08991 * 109.47205 * 300.00440 * 9 7 2 27 27 H 1.08998 * 109.46961 * 60.00270 * 10 9 7 28 28 H 1.09001 * 109.47189 * 300.00143 * 10 9 7 29 29 H 0.96999 * 120.00008 * 0.02562 * 11 10 9 30 30 H 1.08998 * 109.46925 * 60.00402 * 14 12 11 31 31 H 1.09001 * 109.47148 * 300.00322 * 14 12 11 32 32 H 1.09004 * 109.46770 * 60.00629 * 15 14 12 33 33 H 1.08991 * 109.47766 * 300.00411 * 15 14 12 34 34 H 1.08991 * 109.47264 * 60.00501 * 16 15 14 35 35 H 1.09001 * 109.47142 * 300.00136 * 16 15 14 36 36 H 1.08002 * 119.64669 * 359.97438 * 18 17 16 37 37 H 1.07996 * 120.02410 * 179.69320 * 19 18 17 38 38 H 1.08002 * 120.36615 * 180.31976 * 20 19 18 39 39 H 1.08002 * 120.34395 * 179.74309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1866 -6.0980 -0.0007 13 8 3.3994 -6.0980 -0.0003 14 6 1.4331 -7.4031 -0.0008 15 6 2.4274 -8.5660 -0.0009 16 6 1.6624 -9.8910 -0.0016 17 7 2.6144 -11.0046 -0.0011 18 6 3.0497 -11.5149 1.1793 19 6 3.9333 -12.5398 1.2051 20 6 4.3991 -13.0928 0.0039 21 6 3.9609 -12.5785 -1.1809 22 6 3.0480 -11.5100 -1.1715 23 8 2.6474 -11.0405 -2.2245 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.5427 -4.9308 -0.0008 30 1 0.8061 -7.4606 -0.8905 31 1 0.8068 -7.4611 0.8894 32 1 3.0540 -8.5083 0.8892 33 1 3.0540 -8.5082 -0.8908 34 1 1.0361 -9.9485 -0.8917 35 1 1.0354 -9.9490 0.8882 36 1 2.6908 -11.0953 2.1075 37 1 4.2760 -12.9340 2.1503 38 1 5.1003 -13.9141 0.0167 39 1 4.3116 -12.9883 -2.1166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784134205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:45 Heat of formation + Delta-G solvation = -59.384729 kcal Electronic energy + Delta-G solvation = -20211.414482 eV Core-core repulsion = 16925.795114 eV Total energy + Delta-G solvation = -3285.619368 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.58222 -39.31493 -37.12420 -35.84239 -34.85837 -33.00184 -32.76930 -30.17805 -29.78572 -27.60394 -24.92465 -24.13728 -23.30193 -21.90634 -20.93718 -19.98771 -17.94599 -17.57659 -16.80103 -16.56865 -16.22642 -15.82753 -15.79954 -15.12763 -14.78026 -14.49943 -14.43446 -14.29199 -13.38212 -13.20158 -12.90745 -12.59421 -12.32962 -12.32149 -12.06743 -11.98418 -11.80854 -11.22270 -11.04939 -10.97905 -10.65574 -10.39534 -10.34599 -10.14888 -9.82936 -9.47973 -9.20295 -8.56055 -8.37070 -8.25734 -6.10959 -4.13806 0.53790 1.59825 2.34618 2.98381 3.28606 3.34572 3.37504 3.39061 3.67505 4.23063 4.31019 4.40399 4.56136 4.69453 4.76273 4.82225 4.93282 4.98237 5.11994 5.25322 5.26114 5.31602 5.49406 5.67771 5.77451 5.84855 5.96824 6.06515 6.23553 6.32792 6.33397 6.72169 6.81082 6.90289 7.49698 7.59678 7.80636 7.87171 7.99546 8.26144 8.63592 8.92189 9.51123 11.00626 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048109 B = 0.002319 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.868413 B =12069.486031 C =12125.349471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.504 3.496 13 O -0.552 6.552 14 C -0.138 4.138 15 C -0.117 4.117 16 C 0.088 3.912 17 N -0.494 5.494 18 C 0.138 3.862 19 C -0.239 4.239 20 C -0.018 4.018 21 C -0.246 4.246 22 C 0.511 3.489 23 O -0.549 6.549 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.398 0.602 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.228 -26.659 4.796 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.373 5.373 12 C 0.290 3.710 13 O -0.431 6.431 14 C -0.179 4.179 15 C -0.155 4.155 16 C -0.033 4.033 17 N -0.204 5.204 18 C 0.010 3.990 19 C -0.262 4.262 20 C -0.039 4.039 21 C -0.268 4.268 22 C 0.313 3.687 23 O -0.432 6.432 24 H 0.072 0.928 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.231 0.769 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.656 -26.172 4.102 26.624 hybrid contribution -0.028 0.952 0.126 0.960 sum 2.628 -25.220 4.228 25.707 Atomic orbital electron populations 1.69954 1.06088 1.26890 1.50383 1.25003 0.94909 0.99440 0.94976 0.86503 0.79825 0.82957 0.78231 1.20532 1.21150 1.19732 1.21056 0.93249 0.90410 1.51350 0.92268 1.19322 0.94196 0.91150 0.97825 1.21719 0.96062 0.81622 1.00743 1.46347 1.10539 1.06632 1.73750 1.20495 0.88259 0.85610 0.76678 1.90682 1.14141 1.87874 1.50371 1.21559 0.99147 0.92579 1.04603 1.21625 0.98112 0.91042 1.04752 1.22115 0.91300 0.84788 1.05115 1.45593 1.38174 1.29754 1.06836 1.22011 0.93821 0.93539 0.89641 1.20655 1.04379 1.01551 0.99593 1.21440 0.94357 0.96150 0.91985 1.22147 1.03820 1.00668 1.00130 1.17195 0.83643 0.85043 0.82854 1.90979 1.59785 1.62889 1.29516 0.92834 0.95945 0.95944 0.92618 0.92618 0.76852 0.88597 0.88787 0.90646 0.90153 0.87933 0.88892 0.82069 0.83821 0.84908 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.58 5.61 -4.04 -0.02 2.56 16 11 N -0.72 -12.32 5.56 -60.29 -0.33 -12.66 16 12 C 0.50 8.22 7.83 -10.98 -0.09 8.14 16 13 O -0.55 -11.33 15.98 5.56 0.09 -11.24 16 14 C -0.14 -1.47 5.70 -27.88 -0.16 -1.62 16 15 C -0.12 -1.27 4.83 -26.73 -0.13 -1.40 16 16 C 0.09 0.73 5.33 -4.04 -0.02 0.71 16 17 N -0.49 -4.59 2.58 -119.77 -0.31 -4.90 16 18 C 0.14 0.85 10.28 -16.84 -0.17 0.68 16 19 C -0.24 -1.34 10.01 -39.88 -0.40 -1.74 16 20 C -0.02 -0.12 10.10 -39.51 -0.40 -0.52 16 21 C -0.25 -2.36 9.99 -39.38 -0.39 -2.75 16 22 C 0.51 6.31 7.41 -15.44 -0.11 6.19 16 23 O -0.55 -9.00 16.64 4.87 0.08 -8.92 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.40 5.73 8.47 -40.82 -0.35 5.38 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.10 0.96 7.39 -51.93 -0.38 0.58 16 35 H 0.09 0.45 8.01 -51.93 -0.42 0.03 16 36 H 0.16 0.46 8.04 -52.49 -0.42 0.04 16 37 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 39 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 338.83 15.07 5.11 5.11 Total: -1.00 -36.21 338.83 -7.86 -44.07 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.75 Total: 0.40 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.45 Total: -2.89 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.09 Total: -42.93 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.17 Total: -20.16 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.21 -7.86 -44.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784134205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.318 kcal (2) G-P(sol) polarization free energy of solvation -36.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds