Wall clock time and date at job start Tue Mar 31 2020 00:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48499 * 109.46910 * 269.99690 * 3 2 1 5 5 H 1.48493 * 109.46946 * 29.99917 * 3 2 1 6 6 H 1.48501 * 109.46997 * 149.99927 * 3 2 1 7 7 C 1.37878 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99802 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47359 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47101 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99501 * 179.97438 * 11 10 9 13 13 O 1.21278 * 120.00497 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99636 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.46862 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46816 * 180.02562 * 15 14 12 17 17 N 1.46507 * 109.47241 * 180.02562 * 16 15 14 18 18 C 1.35763 * 119.62574 * 90.00014 * 17 16 15 19 19 C 1.35346 * 120.69997 * 180.27933 * 18 17 16 20 20 C 1.40202 * 119.94860 * 359.43664 * 19 18 17 21 21 C 1.36395 * 119.26120 * 0.57668 * 20 19 18 22 22 C 1.34664 * 119.61981 * 270.02413 * 17 16 15 23 23 O 1.22055 * 119.98569 * 359.97438 * 22 17 16 24 24 H 0.97001 * 119.99892 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46853 * 60.00365 * 9 7 2 26 26 H 1.08991 * 109.47205 * 300.00440 * 9 7 2 27 27 H 1.08998 * 109.46961 * 60.00270 * 10 9 7 28 28 H 1.09001 * 109.47189 * 300.00143 * 10 9 7 29 29 H 0.96999 * 120.00008 * 0.02562 * 11 10 9 30 30 H 1.08998 * 109.46925 * 60.00402 * 14 12 11 31 31 H 1.09001 * 109.47148 * 300.00322 * 14 12 11 32 32 H 1.09004 * 109.46770 * 60.00629 * 15 14 12 33 33 H 1.08991 * 109.47766 * 300.00411 * 15 14 12 34 34 H 1.08991 * 109.47264 * 60.00501 * 16 15 14 35 35 H 1.09001 * 109.47142 * 300.00136 * 16 15 14 36 36 H 1.08002 * 119.64669 * 359.97438 * 18 17 16 37 37 H 1.07996 * 120.02410 * 179.69320 * 19 18 17 38 38 H 1.08002 * 120.36615 * 180.31976 * 20 19 18 39 39 H 1.08002 * 120.34395 * 179.74309 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 -0.0001 12 6 2.1866 -6.0980 -0.0007 13 8 3.3994 -6.0980 -0.0003 14 6 1.4331 -7.4031 -0.0008 15 6 2.4274 -8.5660 -0.0009 16 6 1.6624 -9.8910 -0.0016 17 7 2.6144 -11.0046 -0.0011 18 6 3.0497 -11.5149 1.1793 19 6 3.9333 -12.5398 1.2051 20 6 4.3991 -13.0928 0.0039 21 6 3.9609 -12.5785 -1.1809 22 6 3.0480 -11.5100 -1.1715 23 8 2.6474 -11.0405 -2.2245 24 1 -0.4850 0.8401 -0.0004 25 1 0.6248 -2.5571 -0.8898 26 1 0.6240 -2.5567 0.8902 27 1 2.8718 -3.6044 0.8905 28 1 2.8719 -3.6044 -0.8894 29 1 0.5427 -4.9308 -0.0008 30 1 0.8061 -7.4606 -0.8905 31 1 0.8068 -7.4611 0.8894 32 1 3.0540 -8.5083 0.8892 33 1 3.0540 -8.5082 -0.8908 34 1 1.0361 -9.9485 -0.8917 35 1 1.0354 -9.9490 0.8882 36 1 2.6908 -11.0953 2.1075 37 1 4.2760 -12.9340 2.1503 38 1 5.1003 -13.9141 0.0167 39 1 4.3116 -12.9883 -2.1166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784134205.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:44 Heat of formation + Delta-G solvation = -84.784741 kcal Electronic energy + Delta-G solvation = -20212.515909 eV Core-core repulsion = 16925.795114 eV Total energy + Delta-G solvation = -3286.720795 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.28439 -40.69459 -37.95386 -36.81938 -36.32050 -34.82784 -33.78096 -31.62127 -30.75790 -28.62251 -26.62490 -24.88244 -24.21041 -22.99154 -22.48748 -21.29614 -18.78904 -18.50111 -18.25340 -17.72336 -17.22917 -16.92744 -16.75445 -16.47442 -16.41216 -15.74165 -15.48051 -15.06118 -14.65367 -14.59106 -14.35333 -13.82033 -13.30201 -13.23181 -13.09046 -12.92073 -12.89785 -12.68185 -12.55774 -12.53163 -12.24459 -11.82109 -11.68498 -11.48231 -11.08933 -10.97382 -10.80848 -10.62069 -10.01913 -8.93629 -8.25921 -6.36375 -0.04046 0.95513 1.40481 1.40959 1.52380 1.67587 1.68988 2.29034 2.46267 2.72894 3.08682 3.68047 3.70978 3.79955 3.97118 4.01841 4.17348 4.28907 4.33360 4.43110 4.46342 4.49495 4.58293 4.60325 4.68775 4.83697 5.01301 5.10411 5.18249 5.24578 5.30452 5.43079 5.49070 5.56696 5.70958 5.77341 6.14148 6.14895 6.64904 6.76735 7.02304 7.31076 7.32961 8.85790 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.048109 B = 0.002319 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.868413 B =12069.486031 C =12125.349471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.718 5.718 12 C 0.500 3.500 13 O -0.599 6.599 14 C -0.124 4.124 15 C -0.109 4.109 16 C 0.091 3.909 17 N -0.494 5.494 18 C 0.133 3.867 19 C -0.236 4.236 20 C 0.006 3.994 21 C -0.289 4.289 22 C 0.489 3.511 23 O -0.615 6.615 24 H 0.266 0.734 25 H 0.007 0.993 26 H 0.012 0.988 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.413 0.587 30 H 0.114 0.886 31 H 0.140 0.860 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.205 0.795 37 H 0.182 0.818 38 H 0.165 0.835 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -27.825 7.407 28.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.587 4.587 8 H 0.075 0.925 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.369 5.369 12 C 0.288 3.712 13 O -0.480 6.480 14 C -0.164 4.164 15 C -0.148 4.148 16 C -0.029 4.029 17 N -0.203 5.203 18 C 0.006 3.994 19 C -0.258 4.258 20 C -0.016 4.016 21 C -0.311 4.311 22 C 0.294 3.706 23 O -0.503 6.503 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.249 0.751 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.106 0.894 35 H 0.161 0.839 36 H 0.222 0.778 37 H 0.199 0.801 38 H 0.182 0.818 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.448 -27.373 6.755 28.300 hybrid contribution 0.073 1.240 -0.576 1.369 sum 2.521 -26.133 6.179 26.972 Atomic orbital electron populations 1.70050 1.07469 1.28033 1.50918 1.25870 0.95835 1.03078 0.94397 0.85449 0.78642 0.78492 0.78494 1.19886 1.20311 1.19113 1.21474 0.93518 0.92082 1.51649 0.92535 1.19128 0.94192 0.91675 0.96435 1.21187 0.95087 0.82738 0.99472 1.46176 1.11217 1.05569 1.73967 1.21516 0.87978 0.86870 0.74800 1.90664 1.16531 1.88577 1.52244 1.21585 0.98778 0.88449 1.07615 1.21507 0.97963 0.92822 1.02466 1.22171 0.90907 0.83033 1.06829 1.45628 1.37934 1.29594 1.07121 1.22831 0.93426 0.93412 0.89682 1.21206 1.03301 1.00782 1.00526 1.21873 0.92958 0.95622 0.91177 1.22121 1.05673 1.01796 1.01512 1.17664 0.84124 0.85712 0.83062 1.90921 1.62488 1.65192 1.31708 0.92488 0.97419 0.96948 0.93590 0.94270 0.75065 0.86806 0.84192 0.90645 0.94795 0.89433 0.83860 0.77821 0.80118 0.81777 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.55 -30.91 9.11 25.60 0.23 -30.68 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.14 6.05 5.61 86.38 0.48 6.53 16 11 N -0.72 -24.13 5.56 -463.06 -2.57 -26.70 16 12 C 0.50 15.99 7.83 87.66 0.69 16.68 16 13 O -0.60 -24.99 15.98 -3.02 -0.05 -25.04 16 14 C -0.12 -2.35 5.70 29.85 0.17 -2.18 16 15 C -0.11 -2.26 4.83 30.59 0.15 -2.12 16 16 C 0.09 1.34 5.33 86.38 0.46 1.80 16 17 N -0.49 -8.58 2.58 -650.97 -1.68 -10.26 16 18 C 0.13 1.16 10.28 83.42 0.86 2.02 16 19 C -0.24 -1.72 10.01 22.08 0.22 -1.49 16 20 C 0.01 0.06 10.10 22.32 0.23 0.29 16 21 C -0.29 -5.76 9.99 22.40 0.22 -5.53 16 22 C 0.49 12.70 7.41 84.82 0.63 13.33 16 23 O -0.61 -22.07 16.64 -5.49 -0.09 -22.16 16 24 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 29 H 0.41 11.37 8.47 -92.71 -0.79 10.58 16 30 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 33 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.09 1.60 7.39 -2.39 -0.02 1.58 16 35 H 0.14 0.67 8.01 -2.39 -0.02 0.65 16 36 H 0.21 -0.03 8.04 -2.91 -0.02 -0.05 16 37 H 0.18 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -84.64 338.83 3.12 -81.52 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.26 Total: 9.88 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 4.95 Total: 0.83 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -3.97 Total: -90.85 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.14 Total: -47.20 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -84.64 3.12 -81.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784134205.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.266 kcal (2) G-P(sol) polarization free energy of solvation -84.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds