Wall clock time and date at job start Tue Mar 31 2020 00:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47017 * 239.99736 * 3 2 1 5 5 H 1.48504 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47589 * 119.99719 * 3 2 1 7 7 C 1.37876 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47273 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99966 * 180.02562 * 10 9 7 12 12 O 1.21592 * 120.00301 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46684 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.46997 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.47146 * 54.99480 * 16 15 14 18 18 O 1.42902 * 109.47080 * 295.00135 * 16 15 14 19 19 C 1.50697 * 109.47301 * 175.00426 * 16 15 14 20 20 C 1.38232 * 120.00101 * 84.72419 * 19 16 15 21 21 C 1.38243 * 119.99747 * 179.78719 * 20 19 16 22 22 C 1.38235 * 119.99601 * 0.44250 * 21 20 19 23 23 C 1.38233 * 120.00625 * 359.81402 * 22 21 20 24 24 C 1.38236 * 119.99505 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46912 * 60.00012 * 9 7 2 27 27 H 1.08996 * 109.47685 * 300.00494 * 9 7 2 28 28 H 0.96999 * 119.99984 * 359.97438 * 10 9 7 29 29 H 0.96995 * 120.00018 * 0.27633 * 13 11 10 30 30 H 1.09000 * 109.47212 * 300.00355 * 14 13 11 31 31 H 1.09001 * 109.46577 * 60.00430 * 14 13 11 32 32 H 1.09000 * 109.47486 * 300.00065 * 15 14 13 33 33 H 1.09001 * 109.47362 * 60.00788 * 15 14 13 34 34 H 0.96698 * 113.99920 * 299.99891 * 18 16 15 35 35 H 1.07994 * 120.00140 * 0.02562 * 20 19 16 36 36 H 1.07991 * 119.99827 * 180.27713 * 21 20 19 37 37 H 1.08004 * 119.99681 * 179.82887 * 22 21 20 38 38 H 1.07994 * 120.00524 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.99641 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5585 -5.1055 -0.0009 13 7 2.6298 -5.9076 -0.0005 14 6 2.1415 -7.2889 -0.0005 15 6 3.3316 -8.2505 -0.0005 16 6 2.8217 -9.6931 -0.0012 17 1 2.1450 -9.8389 -0.8431 18 8 2.1257 -9.9528 1.2196 19 6 3.9887 -10.6384 -0.1249 20 6 4.6906 -11.0213 1.0028 21 6 5.7585 -11.8919 0.8897 22 6 6.1300 -12.3723 -0.3521 23 6 5.4314 -11.9853 -1.4804 24 6 4.3609 -11.1181 -1.3668 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1568 -3.4353 0.0002 29 1 3.5834 -5.7304 0.0035 30 1 1.5363 -7.4603 0.8897 31 1 1.5356 -7.4600 -0.8903 32 1 3.9372 -8.0792 -0.8905 33 1 3.9371 -8.0793 0.8895 34 1 2.6679 -9.8422 2.0126 35 1 4.4024 -10.6433 1.9725 36 1 6.3040 -12.1946 1.7712 37 1 6.9660 -13.0504 -0.4407 38 1 5.7220 -12.3603 -2.4506 39 1 3.8149 -10.8160 -2.2482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:03 Heat of formation + Delta-G solvation = -68.876239 kcal Electronic energy + Delta-G solvation = -20223.825256 eV Core-core repulsion = 16937.794305 eV Total energy + Delta-G solvation = -3286.030950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.07538 -39.10787 -37.45739 -34.84978 -33.96411 -32.44437 -32.11287 -31.21849 -30.22287 -27.18664 -25.44750 -23.03266 -22.81096 -21.94881 -21.33208 -20.09095 -18.15408 -17.83297 -16.37634 -16.24961 -15.94513 -15.84663 -15.21891 -15.14693 -14.62764 -14.38070 -14.06855 -13.76910 -13.61092 -13.31238 -13.13599 -12.99995 -12.19600 -12.01131 -11.91768 -11.90048 -11.48206 -11.26362 -11.18774 -10.95327 -10.83997 -10.43087 -10.27743 -9.38326 -9.35469 -9.29603 -9.08496 -8.73835 -8.63159 -7.71548 -6.12473 -4.19113 0.94423 1.02561 3.27395 3.27822 3.32455 3.34395 3.48517 4.00939 4.12978 4.23840 4.35444 4.46944 4.60916 4.73198 4.77983 4.80491 5.03044 5.10965 5.20367 5.23260 5.23965 5.41697 5.51460 5.59192 5.66621 5.97175 6.07424 6.10098 6.14257 6.21832 6.60708 6.90697 7.16102 7.30853 7.55444 7.58774 7.61017 7.94712 8.08029 8.79664 8.98805 9.37518 9.51993 10.97754 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.002449 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.661386 B =11431.774488 C =11781.542502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.600 6.600 13 N -0.760 5.760 14 C 0.145 3.855 15 C -0.157 4.157 16 C 0.151 3.849 17 H 0.112 0.888 18 O -0.550 6.550 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.110 4.110 25 H 0.266 0.734 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.386 0.614 29 H 0.390 0.610 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.373 0.627 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.087 -24.113 -0.084 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.391 3.609 12 O -0.479 6.479 13 N -0.417 5.417 14 C 0.020 3.980 15 C -0.195 4.195 16 C 0.092 3.908 17 H 0.130 0.870 18 O -0.356 6.356 19 C -0.113 4.113 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.218 0.782 29 H 0.223 0.777 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.222 0.778 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.258 -24.255 -0.496 27.181 hybrid contribution 1.941 1.166 0.312 2.286 sum 14.199 -23.088 -0.184 27.106 Atomic orbital electron populations 1.69970 1.06079 1.27353 1.48878 1.24949 0.94923 0.99386 0.94812 0.86469 0.79386 0.82354 0.78623 1.20119 1.21085 1.20113 1.21192 0.93205 0.90478 1.53176 0.92035 1.18968 0.87797 0.81068 0.97598 1.45715 1.10720 1.04469 1.77371 1.16161 0.85227 0.81062 0.78421 1.90878 1.14262 1.84247 1.58546 1.45162 1.08701 1.05268 1.82591 1.20970 0.95103 0.79265 1.02685 1.22497 0.98777 0.94494 1.03753 1.20763 0.90909 0.90527 0.88651 0.87011 1.86675 1.41296 1.92243 1.15370 1.20592 0.97844 0.98881 0.93999 1.20894 0.95727 0.98305 0.98101 1.21136 0.97176 0.97531 0.97701 1.21193 0.99914 1.00160 0.92802 1.21172 0.95819 0.97867 0.98746 1.21035 0.97447 0.97395 0.96957 0.92415 0.95777 0.95754 0.78238 0.77747 0.91253 0.91990 0.90170 0.90805 0.77841 0.86116 0.85963 0.86094 0.85919 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.31 5.43 -5.20 -0.03 7.28 16 10 N -0.73 -16.04 5.55 -66.42 -0.37 -16.41 16 11 C 0.69 14.75 8.57 -86.92 -0.74 14.00 16 12 O -0.60 -15.59 16.34 5.28 0.09 -15.51 16 13 N -0.76 -11.50 5.56 -65.22 -0.36 -11.86 16 14 C 0.14 1.89 5.57 -4.04 -0.02 1.87 16 15 C -0.16 -1.37 4.99 -26.73 -0.13 -1.50 16 16 C 0.15 1.30 3.21 -27.88 -0.09 1.21 16 17 H 0.11 0.97 8.05 -51.93 -0.42 0.55 16 18 O -0.55 -5.29 12.67 -35.23 -0.45 -5.73 16 19 C -0.11 -0.92 5.00 -104.63 -0.52 -1.44 16 20 C -0.11 -0.84 9.33 -39.58 -0.37 -1.20 16 21 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 22 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 23 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 24 C -0.11 -0.86 9.68 -39.58 -0.38 -1.24 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 29 H 0.39 4.63 8.49 -40.82 -0.35 4.29 16 30 H 0.07 1.02 7.82 -51.93 -0.41 0.62 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.37 2.37 7.40 45.56 0.34 2.70 16 35 H 0.12 0.67 6.62 -52.49 -0.35 0.32 16 36 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -35.31 336.49 -9.07 -44.38 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.86 Total: 8.11 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -3.90 Total: 1.65 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.00 Total: -54.00 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.36 Total: -21.24 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.31 -9.07 -44.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.500 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds