Wall clock time and date at job start Tue Mar 31 2020 00:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47017 * 239.99736 * 3 2 1 5 5 H 1.48504 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47589 * 119.99719 * 3 2 1 7 7 C 1.37876 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47273 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99966 * 180.02562 * 10 9 7 12 12 O 1.21592 * 120.00301 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46684 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.46997 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.47146 * 54.99480 * 16 15 14 18 18 O 1.42902 * 109.47080 * 295.00135 * 16 15 14 19 19 C 1.50697 * 109.47301 * 175.00426 * 16 15 14 20 20 C 1.38232 * 120.00101 * 84.72419 * 19 16 15 21 21 C 1.38243 * 119.99747 * 179.78719 * 20 19 16 22 22 C 1.38235 * 119.99601 * 0.44250 * 21 20 19 23 23 C 1.38233 * 120.00625 * 359.81402 * 22 21 20 24 24 C 1.38236 * 119.99505 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46912 * 60.00012 * 9 7 2 27 27 H 1.08996 * 109.47685 * 300.00494 * 9 7 2 28 28 H 0.96999 * 119.99984 * 359.97438 * 10 9 7 29 29 H 0.96995 * 120.00018 * 0.27633 * 13 11 10 30 30 H 1.09000 * 109.47212 * 300.00355 * 14 13 11 31 31 H 1.09001 * 109.46577 * 60.00430 * 14 13 11 32 32 H 1.09000 * 109.47486 * 300.00065 * 15 14 13 33 33 H 1.09001 * 109.47362 * 60.00788 * 15 14 13 34 34 H 0.96698 * 113.99920 * 299.99891 * 18 16 15 35 35 H 1.07994 * 120.00140 * 0.02562 * 20 19 16 36 36 H 1.07991 * 119.99827 * 180.27713 * 21 20 19 37 37 H 1.08004 * 119.99681 * 179.82887 * 22 21 20 38 38 H 1.07994 * 120.00524 * 179.97438 * 23 22 21 39 39 H 1.07999 * 119.99641 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5585 -5.1055 -0.0009 13 7 2.6298 -5.9076 -0.0005 14 6 2.1415 -7.2889 -0.0005 15 6 3.3316 -8.2505 -0.0005 16 6 2.8217 -9.6931 -0.0012 17 1 2.1450 -9.8389 -0.8431 18 8 2.1257 -9.9528 1.2196 19 6 3.9887 -10.6384 -0.1249 20 6 4.6906 -11.0213 1.0028 21 6 5.7585 -11.8919 0.8897 22 6 6.1300 -12.3723 -0.3521 23 6 5.4314 -11.9853 -1.4804 24 6 4.3609 -11.1181 -1.3668 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8902 28 1 3.1568 -3.4353 0.0002 29 1 3.5834 -5.7304 0.0035 30 1 1.5363 -7.4603 0.8897 31 1 1.5356 -7.4600 -0.8903 32 1 3.9372 -8.0792 -0.8905 33 1 3.9371 -8.0793 0.8895 34 1 2.6679 -9.8422 2.0126 35 1 4.4024 -10.6433 1.9725 36 1 6.3040 -12.1946 1.7712 37 1 6.9660 -13.0504 -0.4407 38 1 5.7220 -12.3603 -2.4506 39 1 3.8149 -10.8160 -2.2482 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787371289.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:03 Heat of formation + Delta-G solvation = -96.161731 kcal Electronic energy + Delta-G solvation = -20225.008444 eV Core-core repulsion = 16937.794305 eV Total energy + Delta-G solvation = -3287.214138 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.96034 -40.49695 -38.18430 -36.36033 -35.78930 -34.35315 -33.00912 -31.72322 -31.21138 -29.09152 -26.48071 -24.60578 -23.52211 -23.06925 -22.11265 -21.68730 -19.80352 -18.56920 -17.98136 -17.41066 -17.10100 -16.77494 -16.53638 -16.40308 -15.88720 -15.41580 -15.26443 -14.98136 -14.49648 -14.48130 -14.18503 -14.01952 -13.84172 -13.79762 -12.98332 -12.87887 -12.67835 -12.60234 -12.28530 -12.22392 -12.02259 -11.81372 -11.49144 -11.35937 -11.01651 -10.78608 -10.26659 -9.81151 -9.64881 -9.57534 -8.27145 -6.43984 0.40582 0.50993 1.44091 1.48867 1.56860 1.89727 2.25018 2.40681 2.85405 3.07487 3.45876 3.52897 3.63577 3.92996 4.05634 4.12095 4.15381 4.25322 4.34063 4.49708 4.65290 4.66874 4.76508 5.01831 5.06002 5.08723 5.14888 5.18330 5.27630 5.49412 5.54723 5.57285 5.64005 5.66260 5.68973 5.85951 6.11190 6.28309 6.67648 6.76800 7.25289 7.33339 7.73544 8.85067 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037592 B = 0.002449 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.661386 B =11431.774488 C =11781.542502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.688 3.312 12 O -0.652 6.652 13 N -0.732 5.732 14 C 0.143 3.857 15 C -0.139 4.139 16 C 0.156 3.844 17 H 0.106 0.894 18 O -0.569 6.569 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.128 4.128 24 C -0.124 4.124 25 H 0.269 0.731 26 H -0.016 1.016 27 H -0.015 1.015 28 H 0.405 0.595 29 H 0.411 0.589 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.386 0.614 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.218 -24.371 0.043 29.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.388 3.612 12 O -0.534 6.534 13 N -0.389 5.389 14 C 0.019 3.981 15 C -0.177 4.177 16 C 0.096 3.904 17 H 0.123 0.877 18 O -0.377 6.377 19 C -0.124 4.124 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.142 4.142 25 H 0.078 0.922 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.241 0.759 29 H 0.248 0.752 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.237 0.763 35 H 0.154 0.846 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.486 -24.569 -0.363 29.044 hybrid contribution 0.955 1.111 0.281 1.492 sum 16.440 -23.457 -0.082 28.645 Atomic orbital electron populations 1.70142 1.08310 1.28646 1.49869 1.26097 0.95808 1.03959 0.93873 0.85168 0.77852 0.76430 0.79500 1.18627 1.21124 1.18607 1.21570 0.94323 0.90419 1.53014 0.89743 1.18406 0.88149 0.83422 0.93893 1.45292 1.10900 1.03804 1.77712 1.16372 0.85157 0.81708 0.77979 1.90844 1.16936 1.85012 1.60647 1.44913 1.09012 1.04668 1.80354 1.21104 0.96987 0.78675 1.01316 1.22371 0.96856 0.93255 1.05233 1.20673 0.91052 0.90426 0.88222 0.87653 1.86646 1.42407 1.92347 1.16309 1.20548 0.97874 0.99403 0.94557 1.21154 0.95786 0.98419 0.98604 1.21436 0.97184 0.97306 0.98530 1.21515 1.00317 1.00180 0.92737 1.21441 0.95663 0.97725 0.99756 1.21252 0.97935 0.97771 0.97250 0.92233 0.99765 0.99747 0.75938 0.75240 0.92916 0.93268 0.88815 0.89104 0.76332 0.84610 0.84227 0.84293 0.84379 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.99 42.52 29.54 68.60 2.03 44.54 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.56 -30.63 9.28 25.60 0.24 -30.40 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 9 C 0.28 16.15 5.43 85.63 0.46 16.61 16 10 N -0.72 -31.91 5.55 -482.30 -2.68 -34.58 16 11 C 0.69 29.66 8.57 179.06 1.53 31.19 16 12 O -0.65 -35.16 16.34 -4.01 -0.07 -35.22 16 13 N -0.73 -21.35 5.56 -478.52 -2.66 -24.01 16 14 C 0.14 3.67 5.57 86.38 0.48 4.15 16 15 C -0.14 -2.16 4.99 30.60 0.15 -2.01 16 16 C 0.16 2.50 3.21 29.85 0.10 2.60 16 17 H 0.11 1.79 8.05 -2.39 -0.02 1.77 16 18 O -0.57 -10.45 12.67 -148.98 -1.89 -12.34 16 19 C -0.12 -1.83 5.00 -19.87 -0.10 -1.92 16 20 C -0.12 -1.58 9.33 22.27 0.21 -1.37 16 21 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 22 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16 23 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 24 C -0.12 -1.76 9.68 22.27 0.22 -1.54 16 25 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 26 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 27 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 28 H 0.41 14.51 8.34 -92.71 -0.77 13.74 16 29 H 0.41 8.71 8.49 -92.71 -0.79 7.92 16 30 H 0.05 1.56 7.82 -2.39 -0.02 1.54 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.39 4.38 7.40 -74.06 -0.55 3.83 16 35 H 0.14 1.21 6.62 -2.91 -0.02 1.19 16 36 H 0.14 1.08 8.06 -2.92 -0.02 1.05 16 37 H 0.14 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -78.88 336.49 -1.59 -80.47 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -1.03 Total: 23.86 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 4.42 Total: 13.93 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -5.05 Total: -115.24 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -1.95 Total: -47.57 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -78.88 -1.59 -80.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371289.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.694 kcal (2) G-P(sol) polarization free energy of solvation -78.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds