Wall clock time and date at job start Mon Mar 30 2020 23:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47044 * 2 1 4 4 O 1.42906 * 109.46836 * 240.00120 * 2 1 3 5 5 C 1.53003 * 109.47161 * 120.00223 * 2 1 3 6 6 O 1.45203 * 109.46927 * 184.99608 * 5 2 1 7 7 C 1.34232 * 116.99996 * 180.02562 * 6 5 2 8 8 O 1.20828 * 119.99833 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.00057 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47073 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46932 * 304.99548 * 10 9 7 12 12 C 1.50694 * 109.47331 * 64.99961 * 10 9 7 13 13 H 1.07998 * 120.00000 * 29.59002 * 12 10 9 14 14 C 1.37872 * 120.00426 * 209.59097 * 12 10 9 15 15 N 1.31516 * 119.99797 * 4.95225 * 14 12 10 16 16 Si 1.86796 * 120.00636 * 184.95202 * 14 12 10 17 17 H 1.48508 * 109.46653 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47480 * 119.99649 * 16 14 12 19 19 H 1.48494 * 109.47326 * 240.00446 * 16 14 12 20 20 C 1.50699 * 109.47109 * 184.99937 * 10 9 7 21 21 C 1.38240 * 120.00294 * 296.77587 * 20 10 9 22 22 C 1.38234 * 120.00243 * 179.78698 * 21 20 10 23 23 C 1.38233 * 119.99842 * 0.44168 * 22 21 20 24 24 C 1.38234 * 120.00021 * 359.80946 * 23 22 21 25 25 C 1.38235 * 119.99945 * 117.04457 * 20 10 9 26 26 H 1.09001 * 109.46961 * 299.99408 * 1 2 3 27 27 H 1.08999 * 109.47247 * 59.99745 * 1 2 3 28 28 H 1.09008 * 109.47208 * 179.97438 * 1 2 3 29 29 H 0.96697 * 114.00154 * 299.99974 * 4 2 1 30 30 H 1.09002 * 109.47096 * 64.99843 * 5 2 1 31 31 H 1.08997 * 109.47224 * 304.99497 * 5 2 1 32 32 H 1.09003 * 109.47228 * 300.00398 * 9 7 6 33 33 H 1.09008 * 109.47089 * 59.99670 * 9 7 6 34 34 H 0.96996 * 120.00438 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99645 * 359.97438 * 21 20 10 36 36 H 1.07999 * 120.00116 * 180.27314 * 22 21 20 37 37 H 1.08000 * 120.00113 * 179.83616 * 23 22 21 38 38 H 1.08009 * 119.99918 * 180.02562 * 24 23 22 39 39 H 1.07994 * 120.00335 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 8 3.4872 -0.6189 1.3103 7 6 4.0960 -1.2042 2.3536 8 8 3.4415 -1.7834 3.1879 9 6 5.5959 -1.1390 2.4843 10 6 6.0300 -1.8788 3.7513 11 1 5.5006 -1.4683 4.6111 12 6 5.7051 -3.3439 3.6138 13 1 5.6979 -3.8061 2.6378 14 6 5.4171 -4.0942 4.7340 15 7 5.3300 -3.5127 5.9104 16 14 5.1505 -5.9367 4.5810 17 1 5.3017 -6.3424 3.1605 18 1 6.1532 -6.6526 5.4101 19 1 3.7842 -6.2799 5.0505 20 6 7.5145 -1.7098 3.9479 21 6 8.3978 -2.2170 3.0133 22 6 9.7594 -2.0581 3.1914 23 6 10.2380 -1.4000 4.3088 24 6 9.3550 -0.8972 5.2460 25 6 7.9932 -1.0523 5.0657 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7210 -1.5952 -1.2330 30 1 1.7517 -1.7716 1.2055 31 1 1.6055 -0.2618 2.1370 32 1 6.0571 -1.6063 1.6142 33 1 5.9102 -0.0971 2.5465 34 1 5.1269 -4.0405 6.6985 35 1 8.0239 -2.7348 2.1424 36 1 10.4492 -2.4506 2.4590 37 1 11.3019 -1.2781 4.4493 38 1 9.7290 -0.3826 6.1189 39 1 7.3034 -0.6594 5.7979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792272040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:51 Heat of formation + Delta-G solvation = -125.381773 kcal Electronic energy + Delta-G solvation = -21458.232849 eV Core-core repulsion = 18137.458884 eV Total energy + Delta-G solvation = -3320.773965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.79041 -38.40672 -37.59871 -35.59195 -34.02896 -31.68341 -31.44459 -30.02745 -29.08469 -26.93383 -25.46070 -22.95709 -21.80626 -21.63920 -20.58661 -19.24243 -17.07738 -16.80503 -16.69349 -16.22272 -15.81537 -15.18962 -14.89635 -14.46125 -14.18572 -13.90367 -13.82519 -13.10477 -12.89580 -12.55084 -12.41278 -12.21944 -12.18512 -11.92329 -11.68971 -11.64523 -10.94086 -10.91717 -10.77530 -10.60631 -10.32044 -10.27932 -10.12699 -10.08516 -9.55112 -9.41673 -9.08104 -8.41394 -8.06007 -7.66192 -5.99595 -4.00112 2.27297 2.31179 3.15552 3.22945 3.32476 3.39780 3.42215 4.29342 4.46046 4.68564 4.73037 4.89933 4.97604 5.30639 5.35674 5.44891 5.51979 5.65416 5.71492 5.77218 5.82634 5.84863 5.97656 6.07214 6.12899 6.26788 6.39349 6.49532 6.69365 6.87594 6.98380 7.15311 7.29672 7.40137 7.49044 7.54426 7.82153 7.90746 7.99879 8.30048 8.70503 8.99952 9.61871 11.10348 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.005272 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.752850 B = 5309.593058 C = 6485.171137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.107 0.893 4 O -0.556 6.556 5 C 0.034 3.966 6 O -0.365 6.365 7 C 0.454 3.546 8 O -0.468 6.468 9 C -0.094 4.094 10 C 0.074 3.926 11 H 0.074 0.926 12 C -0.498 4.498 13 H 0.053 0.947 14 C 0.077 3.923 15 N -0.880 5.880 16 Si 0.886 3.114 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.024 4.024 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.153 4.153 24 C -0.129 4.129 25 C -0.118 4.118 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.374 0.626 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.259 0.741 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.629 6.991 -8.369 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.046 3.954 3 H 0.125 0.875 4 O -0.361 6.361 5 C -0.041 4.041 6 O -0.284 6.284 7 C 0.295 3.705 8 O -0.350 6.350 9 C -0.131 4.131 10 C 0.056 3.944 11 H 0.092 0.908 12 C -0.535 4.535 13 H 0.071 0.929 14 C -0.127 4.127 15 N -0.516 5.516 16 Si 0.715 3.285 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.024 4.024 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.171 4.171 24 C -0.147 4.147 25 C -0.136 4.136 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.222 0.778 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.642 7.342 -8.013 11.184 hybrid contribution -0.533 -1.833 0.410 1.952 sum -3.175 5.509 -7.602 9.911 Atomic orbital electron populations 1.22431 0.95244 1.03068 1.03272 1.21949 0.92638 0.97394 0.83413 0.87487 1.86616 1.77327 1.28980 1.43204 1.23658 0.79760 1.01514 0.99190 1.86579 1.21447 1.72031 1.48382 1.24033 0.92412 0.75651 0.78426 1.90726 1.66309 1.37615 1.40377 1.21580 0.86399 1.01908 1.03262 1.17918 0.87407 0.96345 0.92758 0.90779 1.20755 1.47148 0.92592 0.93032 0.92878 1.24832 0.94215 0.98125 0.95506 1.69907 1.47882 1.35238 0.98619 0.86630 0.77644 0.86138 0.78136 1.19811 1.21050 1.21120 1.20630 0.98072 0.91259 0.92470 1.20972 0.92381 0.99731 1.00026 1.20986 0.95636 1.00520 0.97837 1.20817 0.98377 1.01975 0.95976 1.20987 0.93868 1.01118 0.98696 1.21088 0.94613 0.99805 0.98081 0.91141 0.91044 0.91939 0.77841 0.91364 0.90899 0.89306 0.90413 0.93079 0.86719 0.87542 0.87725 0.87564 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.53 37.16 0.35 -1.16 16 2 C 0.11 1.18 3.88 -26.73 -0.10 1.08 16 3 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 4 O -0.56 -6.83 13.31 -38.79 -0.52 -7.35 16 5 C 0.03 0.48 5.10 37.16 0.19 0.67 16 6 O -0.37 -6.52 10.19 -42.03 -0.43 -6.95 16 7 C 0.45 9.46 7.71 36.00 0.28 9.74 16 8 O -0.47 -11.48 14.73 -18.75 -0.28 -11.76 16 9 C -0.09 -1.87 5.06 -27.89 -0.14 -2.01 16 10 C 0.07 1.77 1.69 -92.93 -0.16 1.61 16 11 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 12 C -0.50 -13.24 6.38 -34.45 -0.22 -13.46 16 13 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 14 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 15 N -0.88 -25.52 12.85 55.43 0.71 -24.81 16 16 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 C -0.02 -0.52 4.77 -104.62 -0.50 -1.02 16 21 C -0.11 -2.27 8.86 -39.58 -0.35 -2.62 16 22 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 23 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 24 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 25 C -0.12 -2.46 9.67 -39.58 -0.38 -2.84 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.37 3.33 9.05 45.56 0.41 3.75 16 30 H 0.07 0.99 8.13 -51.93 -0.42 0.56 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.59 16 32 H 0.09 1.66 7.76 -51.93 -0.40 1.26 16 33 H 0.08 1.37 8.14 -51.92 -0.42 0.94 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.11 2.22 7.75 -52.49 -0.41 1.81 16 36 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 39 H 0.11 2.40 7.95 -52.49 -0.42 1.99 16 LS Contribution 336.92 15.07 5.08 5.08 Total: -1.00 -32.19 336.92 -7.72 -39.92 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.95 Total: 5.55 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.32 Total: -16.52 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.71 Total: -24.81 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -1.22 Total: -26.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.19 -7.72 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792272040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.464 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds