Wall clock time and date at job start Mon Mar 30 2020 23:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47044 * 2 1 4 4 O 1.42906 * 109.46836 * 240.00120 * 2 1 3 5 5 C 1.53003 * 109.47161 * 120.00223 * 2 1 3 6 6 O 1.45203 * 109.46927 * 184.99608 * 5 2 1 7 7 C 1.34232 * 116.99996 * 180.02562 * 6 5 2 8 8 O 1.20828 * 119.99833 * 0.02562 * 7 6 5 9 9 C 1.50692 * 120.00057 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47073 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46932 * 304.99548 * 10 9 7 12 12 C 1.50694 * 109.47331 * 64.99961 * 10 9 7 13 13 H 1.07998 * 120.00000 * 29.59002 * 12 10 9 14 14 C 1.37872 * 120.00426 * 209.59097 * 12 10 9 15 15 N 1.31516 * 119.99797 * 4.95225 * 14 12 10 16 16 Si 1.86796 * 120.00636 * 184.95202 * 14 12 10 17 17 H 1.48508 * 109.46653 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47480 * 119.99649 * 16 14 12 19 19 H 1.48494 * 109.47326 * 240.00446 * 16 14 12 20 20 C 1.50699 * 109.47109 * 184.99937 * 10 9 7 21 21 C 1.38240 * 120.00294 * 296.77587 * 20 10 9 22 22 C 1.38234 * 120.00243 * 179.78698 * 21 20 10 23 23 C 1.38233 * 119.99842 * 0.44168 * 22 21 20 24 24 C 1.38234 * 120.00021 * 359.80946 * 23 22 21 25 25 C 1.38235 * 119.99945 * 117.04457 * 20 10 9 26 26 H 1.09001 * 109.46961 * 299.99408 * 1 2 3 27 27 H 1.08999 * 109.47247 * 59.99745 * 1 2 3 28 28 H 1.09008 * 109.47208 * 179.97438 * 1 2 3 29 29 H 0.96697 * 114.00154 * 299.99974 * 4 2 1 30 30 H 1.09002 * 109.47096 * 64.99843 * 5 2 1 31 31 H 1.08997 * 109.47224 * 304.99497 * 5 2 1 32 32 H 1.09003 * 109.47228 * 300.00398 * 9 7 6 33 33 H 1.09008 * 109.47089 * 59.99670 * 9 7 6 34 34 H 0.96996 * 120.00438 * 179.97438 * 15 14 12 35 35 H 1.07999 * 119.99645 * 359.97438 * 21 20 10 36 36 H 1.07999 * 120.00116 * 180.27314 * 22 21 20 37 37 H 1.08000 * 120.00113 * 179.83616 * 23 22 21 38 38 H 1.08009 * 119.99918 * 180.02562 * 24 23 22 39 39 H 1.07994 * 120.00335 * 359.97438 * 25 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0400 -0.7213 1.2492 6 8 3.4872 -0.6189 1.3103 7 6 4.0960 -1.2042 2.3536 8 8 3.4415 -1.7834 3.1879 9 6 5.5959 -1.1390 2.4843 10 6 6.0300 -1.8788 3.7513 11 1 5.5006 -1.4683 4.6111 12 6 5.7051 -3.3439 3.6138 13 1 5.6979 -3.8061 2.6378 14 6 5.4171 -4.0942 4.7340 15 7 5.3300 -3.5127 5.9104 16 14 5.1505 -5.9367 4.5810 17 1 5.3017 -6.3424 3.1605 18 1 6.1532 -6.6526 5.4101 19 1 3.7842 -6.2799 5.0505 20 6 7.5145 -1.7098 3.9479 21 6 8.3978 -2.2170 3.0133 22 6 9.7594 -2.0581 3.1914 23 6 10.2380 -1.4000 4.3088 24 6 9.3550 -0.8972 5.2460 25 6 7.9932 -1.0523 5.0657 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.7210 -1.5952 -1.2330 30 1 1.7517 -1.7716 1.2055 31 1 1.6055 -0.2618 2.1370 32 1 6.0571 -1.6063 1.6142 33 1 5.9102 -0.0971 2.5465 34 1 5.1269 -4.0405 6.6985 35 1 8.0239 -2.7348 2.1424 36 1 10.4492 -2.4506 2.4590 37 1 11.3019 -1.2781 4.4493 38 1 9.7290 -0.3826 6.1189 39 1 7.3034 -0.6594 5.7979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792272040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:50 Heat of formation + Delta-G solvation = -145.239290 kcal Electronic energy + Delta-G solvation = -21459.093936 eV Core-core repulsion = 18137.458884 eV Total energy + Delta-G solvation = -3321.635052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36972 -39.90835 -38.70871 -37.06845 -35.82840 -33.50578 -32.51430 -31.50827 -30.59179 -28.26967 -27.14078 -24.65770 -23.17126 -22.73591 -22.11695 -20.93301 -18.65107 -18.51282 -18.00811 -17.61225 -17.27004 -16.63185 -16.38898 -16.08461 -15.63944 -15.47674 -14.93881 -14.57620 -14.35097 -13.97784 -13.77070 -13.71851 -13.50340 -13.30666 -13.08422 -12.88728 -12.87259 -12.60440 -12.46945 -11.86247 -11.82198 -11.74504 -11.61529 -11.46246 -11.30362 -11.08707 -10.89502 -10.50006 -9.54530 -9.22784 -8.08065 -6.12333 0.77607 0.81658 1.35445 1.37105 1.46209 1.49764 1.83352 2.43230 3.16195 3.31751 3.41655 3.66142 3.97437 4.00560 4.22567 4.26164 4.35178 4.37859 4.41861 4.47277 4.51393 4.55945 4.70778 4.80644 4.89377 4.95382 5.05220 5.11592 5.21951 5.36215 5.47653 5.58834 5.61038 5.75079 5.83530 5.93786 6.13330 6.36777 6.44922 6.76343 6.94950 7.08557 7.50912 9.01488 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.005272 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.752850 B = 5309.593058 C = 6485.171137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 H 0.109 0.891 4 O -0.573 6.573 5 C 0.026 3.974 6 O -0.362 6.362 7 C 0.459 3.541 8 O -0.514 6.514 9 C -0.091 4.091 10 C 0.078 3.922 11 H 0.030 0.970 12 C -0.493 4.493 13 H 0.049 0.951 14 C 0.023 3.977 15 N -0.915 5.915 16 Si 0.937 3.063 17 H -0.264 1.264 18 H -0.281 1.281 19 H -0.290 1.290 20 C -0.048 4.048 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.146 4.146 24 C -0.129 4.129 25 C -0.141 4.141 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.388 0.612 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.255 0.745 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 7.237 -10.049 12.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 H 0.127 0.873 4 O -0.380 6.380 5 C -0.049 4.049 6 O -0.280 6.280 7 C 0.302 3.698 8 O -0.400 6.400 9 C -0.129 4.129 10 C 0.059 3.941 11 H 0.049 0.951 12 C -0.531 4.531 13 H 0.067 0.933 14 C -0.176 4.176 15 N -0.554 5.554 16 Si 0.764 3.236 17 H -0.188 1.188 18 H -0.207 1.207 19 H -0.216 1.216 20 C -0.048 4.048 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.163 4.163 24 C -0.147 4.147 25 C -0.160 4.160 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.237 0.763 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.193 7.592 -9.738 12.405 hybrid contribution -0.956 -1.818 0.859 2.227 sum -2.149 5.774 -8.879 10.807 Atomic orbital electron populations 1.22377 0.92619 1.03900 1.04314 1.21987 0.94428 0.96750 0.81450 0.87299 1.86580 1.77891 1.30236 1.43299 1.24065 0.77579 1.02036 1.01197 1.86556 1.23682 1.71025 1.46709 1.24163 0.92744 0.74702 0.78215 1.90711 1.67320 1.39889 1.42120 1.21511 0.86210 1.03078 1.02062 1.17698 0.88747 0.94928 0.92681 0.95135 1.21029 1.45549 0.94090 0.92422 0.93311 1.25520 0.94921 1.01653 0.95540 1.70046 1.50081 1.36224 0.99094 0.85829 0.77167 0.82206 0.78435 1.18802 1.20681 1.21613 1.20447 0.96997 0.93449 0.93932 1.21069 0.93480 1.00069 0.99813 1.21381 0.94996 0.99464 0.98623 1.21288 1.00197 1.00048 0.94800 1.21297 0.92675 1.00747 0.99939 1.21113 0.96022 1.01069 0.97779 0.90326 0.89728 0.91270 0.76302 0.91703 0.90776 0.87658 0.87960 0.93562 0.86535 0.84088 0.83801 0.84925 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.53 71.98 0.69 -1.87 16 2 C 0.11 2.38 3.88 30.60 0.12 2.50 16 3 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 4 O -0.57 -13.21 13.31 -145.57 -1.94 -15.15 16 5 C 0.03 0.72 5.10 71.98 0.37 1.09 16 6 O -0.36 -12.85 10.19 -48.79 -0.50 -13.35 16 7 C 0.46 19.51 7.71 71.23 0.55 20.06 16 8 O -0.51 -26.25 14.73 21.96 0.32 -25.92 16 9 C -0.09 -3.68 5.06 29.85 0.15 -3.52 16 10 C 0.08 3.84 1.69 -12.29 -0.02 3.82 16 11 H 0.03 1.75 6.95 -2.39 -0.02 1.73 16 12 C -0.49 -26.85 6.38 25.60 0.16 -26.69 16 13 H 0.05 2.63 7.82 -2.91 -0.02 2.60 16 14 C 0.02 1.30 5.45 84.65 0.46 1.76 16 15 N -0.92 -55.36 12.85 21.45 0.28 -55.09 16 16 Si 0.94 45.65 29.54 68.60 2.03 47.67 16 17 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 19 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 20 C -0.05 -2.11 4.77 -19.86 -0.09 -2.21 16 21 C -0.13 -4.90 8.86 22.27 0.20 -4.71 16 22 C -0.13 -4.09 10.05 22.27 0.22 -3.87 16 23 C -0.15 -4.47 10.05 22.27 0.22 -4.24 16 24 C -0.13 -4.45 10.05 22.27 0.22 -4.22 16 25 C -0.14 -5.99 9.67 22.27 0.22 -5.78 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.39 6.38 9.05 -74.06 -0.67 5.71 16 30 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 31 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 32 H 0.11 3.88 7.76 -2.39 -0.02 3.86 16 33 H 0.10 3.58 8.14 -2.38 -0.02 3.56 16 34 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 35 H 0.12 4.37 7.75 -2.91 -0.02 4.35 16 36 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 37 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.13 3.80 8.06 -2.91 -0.02 3.77 16 39 H 0.10 4.29 7.95 -2.91 -0.02 4.27 16 Total: -1.00 -71.56 336.92 4.03 -67.53 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.37 Total: 22.18 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.47 Total: -27.88 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.09 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -2.11 Total: -54.42 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.56 4.03 -67.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792272040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.707 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds