Wall clock time and date at job start Mon Mar 30 2020 23:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00285 * 2 1 4 4 C 1.52998 * 109.47127 * 180.02562 * 3 2 1 5 5 O 1.45198 * 109.47350 * 65.00109 * 4 3 2 6 6 C 1.34223 * 117.00341 * 179.97438 * 5 4 3 7 7 O 1.20826 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00372 * 180.27293 * 6 5 4 9 9 C 1.52997 * 109.47249 * 179.72499 * 8 6 5 10 10 H 1.08997 * 109.47369 * 305.00346 * 9 8 6 11 11 C 1.50696 * 109.47088 * 65.00282 * 9 8 6 12 12 H 1.07998 * 120.00537 * 234.67628 * 11 9 8 13 13 C 1.37883 * 119.99544 * 54.68083 * 11 9 8 14 14 N 1.31509 * 120.00364 * 4.86604 * 13 11 9 15 15 Si 1.86799 * 119.99591 * 184.87476 * 13 11 9 16 16 H 1.48496 * 109.47773 * 59.99400 * 15 13 11 17 17 H 1.48506 * 109.47132 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.47183 * 299.99217 * 15 13 11 19 19 C 1.50707 * 109.46820 * 185.00362 * 9 8 6 20 20 C 1.38237 * 119.99557 * 151.49053 * 19 9 8 21 21 C 1.38239 * 119.99448 * 179.78793 * 20 19 9 22 22 C 1.38230 * 119.99989 * 0.43708 * 21 20 19 23 23 C 1.38236 * 120.00231 * 359.81531 * 22 21 20 24 24 C 1.38233 * 119.99888 * 331.75910 * 19 9 8 25 25 H 1.09001 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47042 * 299.99923 * 1 2 3 27 27 H 1.09004 * 109.46852 * 59.99476 * 1 2 3 28 28 H 1.09002 * 109.46908 * 59.99814 * 3 2 1 29 29 H 1.08999 * 109.47079 * 300.00068 * 3 2 1 30 30 H 1.09001 * 109.47042 * 304.99982 * 4 3 2 31 31 H 1.08997 * 109.47157 * 185.00324 * 4 3 2 32 32 H 1.08999 * 109.47066 * 299.73427 * 8 6 5 33 33 H 1.09010 * 109.46765 * 59.72783 * 8 6 5 34 34 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 35 35 H 1.07997 * 120.00194 * 359.97438 * 20 19 9 36 36 H 1.08006 * 119.99779 * 180.27248 * 21 20 19 37 37 H 1.08006 * 119.99908 * 179.83420 * 22 21 20 38 38 H 1.08000 * 119.99999 * 180.02562 * 23 22 21 39 39 H 1.07995 * 120.00507 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9718 0.5698 -1.2416 6 6 5.2924 0.3911 -1.4018 7 8 6.0585 0.7364 -0.5336 8 6 5.8201 -0.2352 -2.6669 9 6 7.3464 -0.3165 -2.5975 10 1 7.7545 0.6747 -2.4003 11 6 7.7495 -1.2553 -1.4898 12 1 8.4238 -0.9194 -0.7159 13 6 7.2576 -2.5431 -1.4643 14 7 6.5140 -2.9827 -2.4559 15 14 7.6472 -3.6633 -0.0211 16 1 7.1285 -3.0563 1.2309 17 1 7.0046 -4.9852 -0.2330 18 1 9.1180 -3.8389 0.0862 19 6 7.8822 -0.8284 -3.9098 20 6 9.1462 -0.4599 -4.3311 21 6 9.6394 -0.9329 -5.5327 22 6 8.8652 -1.7671 -6.3172 23 6 7.5992 -2.1314 -5.8984 24 6 7.1076 -1.6619 -4.6947 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1763 0.0890 32 1 5.4073 -1.2381 -2.7754 33 1 5.5272 0.3729 -3.5229 34 1 6.1677 -3.8886 -2.4378 35 1 9.7495 0.1951 -3.7200 36 1 10.6287 -0.6486 -5.8598 37 1 9.2495 -2.1346 -7.2573 38 1 6.9945 -2.7835 -6.5111 39 1 6.1186 -1.9466 -4.3675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795979768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:22 Heat of formation + Delta-G solvation = -106.969824 kcal Electronic energy + Delta-G solvation = -21715.989034 eV Core-core repulsion = 18396.013471 eV Total energy + Delta-G solvation = -3319.975563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.61143 -38.26467 -37.75477 -35.70059 -34.20152 -31.15468 -30.54995 -29.81654 -28.50773 -26.45127 -25.90955 -23.18403 -22.27960 -21.44619 -20.40250 -19.21838 -17.00571 -16.75719 -16.43552 -15.81272 -15.53530 -15.45179 -15.24203 -14.79290 -14.27750 -13.84706 -13.63064 -13.24504 -12.71883 -12.43333 -12.34611 -12.22243 -11.70799 -11.56079 -11.46449 -11.30671 -11.20834 -10.88812 -10.80432 -10.46375 -10.19608 -10.00653 -9.95921 -9.73894 -9.39814 -9.31993 -9.09369 -8.47487 -7.80015 -7.44908 -5.99131 -4.10657 2.49845 2.58484 3.32778 3.34638 3.37274 3.42622 3.48196 3.75045 4.42929 4.97306 4.97601 5.15276 5.23231 5.24858 5.28779 5.33136 5.52535 5.62450 5.78788 5.82024 5.90445 6.01241 6.10657 6.34020 6.45376 6.52706 6.71134 6.76987 7.00841 7.12210 7.13456 7.25824 7.30697 7.47327 7.53532 7.70639 7.92073 8.08162 8.16915 8.30314 8.81710 8.90919 9.53526 10.95058 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.005310 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.608513 B = 5271.634488 C = 5954.357671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.065 3.935 4 C 0.066 3.934 5 O -0.363 6.363 6 C 0.468 3.532 7 O -0.501 6.501 8 C -0.112 4.112 9 C 0.085 3.915 10 H 0.039 0.961 11 C -0.481 4.481 12 H 0.060 0.940 13 C 0.061 3.939 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 C -0.027 4.027 20 C -0.131 4.131 21 C -0.141 4.141 22 C -0.153 4.153 23 C -0.142 4.142 24 C -0.069 4.069 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.065 0.935 34 H 0.264 0.736 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.315 6.264 -1.036 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.012 4.012 4 C -0.008 4.008 5 O -0.282 6.282 6 C 0.312 3.688 7 O -0.387 6.387 8 C -0.150 4.150 9 C 0.066 3.934 10 H 0.058 0.942 11 C -0.519 4.519 12 H 0.079 0.921 13 C -0.140 4.140 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.028 4.028 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.171 4.171 23 C -0.160 4.160 24 C -0.087 4.087 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.076 6.036 -0.777 10.112 hybrid contribution 0.112 -0.619 1.002 1.183 sum -7.963 5.417 0.225 9.634 Atomic orbital electron populations 1.22735 0.81354 1.02815 0.99627 1.88035 1.19355 1.27244 1.95309 1.22600 0.92291 0.85529 1.00793 1.22836 0.92366 0.98556 0.87077 1.86596 1.27904 1.74301 1.39352 1.24285 0.78924 0.75115 0.90476 1.90570 1.57595 1.46830 1.43673 1.21786 1.00344 1.03601 0.89225 1.17694 0.88977 0.96003 0.90692 0.94218 1.20949 1.27817 0.95913 1.07176 0.92136 1.24923 0.95370 0.97783 0.95911 1.69641 1.35316 1.17550 1.30011 0.86614 0.78573 0.79578 0.83131 1.20308 1.21245 1.20311 1.20236 0.93324 0.95193 0.94019 1.20877 0.96314 1.01649 0.96041 1.20796 0.98870 1.00214 0.96094 1.20777 0.95623 1.01098 0.99630 1.21051 0.95989 1.01295 0.97677 1.21386 1.01853 0.94228 0.91271 0.89624 0.94385 0.94063 0.91661 0.92285 0.90839 0.90314 0.84087 0.91646 0.92584 0.87614 0.88047 0.88250 0.87980 0.84173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -5.69 10.67 -38.80 -0.41 -6.10 16 3 C 0.06 0.82 6.33 37.16 0.24 1.05 16 4 C 0.07 1.06 5.84 37.16 0.22 1.28 16 5 O -0.36 -7.24 10.19 -42.00 -0.43 -7.67 16 6 C 0.47 10.55 7.71 36.01 0.28 10.82 16 7 O -0.50 -12.36 14.73 -18.75 -0.28 -12.63 16 8 C -0.11 -2.51 4.18 -27.88 -0.12 -2.62 16 9 C 0.09 2.06 1.97 -92.92 -0.18 1.87 16 10 H 0.04 0.96 7.91 -51.93 -0.41 0.54 16 11 C -0.48 -12.95 7.27 -34.44 -0.25 -13.20 16 12 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 13 C 0.06 1.62 5.12 -17.82 -0.09 1.53 16 14 N -0.89 -23.06 7.99 55.43 0.44 -22.62 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.03 -0.62 4.69 -104.62 -0.49 -1.11 16 20 C -0.13 -2.78 9.71 -39.58 -0.38 -3.17 16 21 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 22 C -0.15 -2.88 10.05 -39.59 -0.40 -3.28 16 23 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 24 C -0.07 -1.53 7.45 -39.58 -0.30 -1.82 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.27 8.13 -51.93 -0.42 0.84 16 31 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 32 H 0.14 3.40 4.71 -51.93 -0.24 3.16 16 33 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 34 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.11 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 38 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.14 3.20 5.18 -52.49 -0.27 2.93 16 LS Contribution 327.15 15.07 4.93 4.93 Total: -1.00 -29.92 327.15 -7.47 -37.40 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.54 Total: 3.57 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -1.16 Total: -13.56 kcal Atomic # 7 Polarization: -23.06 SS G_CDS: 0.44 Total: -22.62 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -1.12 Total: -26.41 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.92 -7.47 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795979768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.574 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds