Wall clock time and date at job start Mon Mar 30 2020 23:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00285 * 2 1 4 4 C 1.52998 * 109.47127 * 180.02562 * 3 2 1 5 5 O 1.45198 * 109.47350 * 65.00109 * 4 3 2 6 6 C 1.34223 * 117.00341 * 179.97438 * 5 4 3 7 7 O 1.20826 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00372 * 180.27293 * 6 5 4 9 9 C 1.52997 * 109.47249 * 179.72499 * 8 6 5 10 10 H 1.08997 * 109.47369 * 305.00346 * 9 8 6 11 11 C 1.50696 * 109.47088 * 65.00282 * 9 8 6 12 12 H 1.07998 * 120.00537 * 234.67628 * 11 9 8 13 13 C 1.37883 * 119.99544 * 54.68083 * 11 9 8 14 14 N 1.31509 * 120.00364 * 4.86604 * 13 11 9 15 15 Si 1.86799 * 119.99591 * 184.87476 * 13 11 9 16 16 H 1.48496 * 109.47773 * 59.99400 * 15 13 11 17 17 H 1.48506 * 109.47132 * 179.97438 * 15 13 11 18 18 H 1.48509 * 109.47183 * 299.99217 * 15 13 11 19 19 C 1.50707 * 109.46820 * 185.00362 * 9 8 6 20 20 C 1.38237 * 119.99557 * 151.49053 * 19 9 8 21 21 C 1.38239 * 119.99448 * 179.78793 * 20 19 9 22 22 C 1.38230 * 119.99989 * 0.43708 * 21 20 19 23 23 C 1.38236 * 120.00231 * 359.81531 * 22 21 20 24 24 C 1.38233 * 119.99888 * 331.75910 * 19 9 8 25 25 H 1.09001 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47042 * 299.99923 * 1 2 3 27 27 H 1.09004 * 109.46852 * 59.99476 * 1 2 3 28 28 H 1.09002 * 109.46908 * 59.99814 * 3 2 1 29 29 H 1.08999 * 109.47079 * 300.00068 * 3 2 1 30 30 H 1.09001 * 109.47042 * 304.99982 * 4 3 2 31 31 H 1.08997 * 109.47157 * 185.00324 * 4 3 2 32 32 H 1.08999 * 109.47066 * 299.73427 * 8 6 5 33 33 H 1.09010 * 109.46765 * 59.72783 * 8 6 5 34 34 H 0.97002 * 119.99731 * 180.02562 * 14 13 11 35 35 H 1.07997 * 120.00194 * 359.97438 * 20 19 9 36 36 H 1.08006 * 119.99779 * 180.27248 * 21 20 19 37 37 H 1.08006 * 119.99908 * 179.83420 * 22 21 20 38 38 H 1.08000 * 119.99999 * 180.02562 * 23 22 21 39 39 H 1.07995 * 120.00507 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9718 0.5698 -1.2416 6 6 5.2924 0.3911 -1.4018 7 8 6.0585 0.7364 -0.5336 8 6 5.8201 -0.2352 -2.6669 9 6 7.3464 -0.3165 -2.5975 10 1 7.7545 0.6747 -2.4003 11 6 7.7495 -1.2553 -1.4898 12 1 8.4238 -0.9194 -0.7159 13 6 7.2576 -2.5431 -1.4643 14 7 6.5140 -2.9827 -2.4559 15 14 7.6472 -3.6633 -0.0211 16 1 7.1285 -3.0563 1.2309 17 1 7.0046 -4.9852 -0.2330 18 1 9.1180 -3.8389 0.0862 19 6 7.8822 -0.8284 -3.9098 20 6 9.1462 -0.4599 -4.3311 21 6 9.6394 -0.9329 -5.5327 22 6 8.8652 -1.7671 -6.3172 23 6 7.5992 -2.1314 -5.8984 24 6 7.1076 -1.6619 -4.6947 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 3.8515 0.5681 0.8409 31 1 3.9786 2.1763 0.0890 32 1 5.4073 -1.2381 -2.7754 33 1 5.5272 0.3729 -3.5229 34 1 6.1677 -3.8886 -2.4378 35 1 9.7495 0.1951 -3.7200 36 1 10.6287 -0.6486 -5.8598 37 1 9.2495 -2.1346 -7.2573 38 1 6.9945 -2.7835 -6.5111 39 1 6.1186 -1.9466 -4.3675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795979768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:21 Heat of formation + Delta-G solvation = -122.798844 kcal Electronic energy + Delta-G solvation = -21716.675432 eV Core-core repulsion = 18396.013471 eV Total energy + Delta-G solvation = -3320.661961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30369 -39.85218 -38.86393 -37.32361 -36.03807 -33.05440 -31.80038 -31.38405 -30.12300 -27.98348 -27.16041 -24.83375 -23.65716 -23.00593 -22.02000 -20.97216 -18.66253 -18.27222 -17.95873 -17.37431 -16.98876 -16.89975 -16.56693 -16.43578 -15.67992 -15.42196 -15.23420 -14.92840 -14.18826 -14.01143 -13.78139 -13.51753 -13.32190 -13.17642 -13.09763 -12.86358 -12.74166 -12.53831 -12.32819 -12.20515 -11.89617 -11.72458 -11.54278 -11.22718 -11.10161 -10.98729 -10.64864 -10.45870 -9.39369 -9.12838 -7.97977 -6.16066 0.89291 1.00275 1.36508 1.38894 1.45295 1.55881 1.96139 2.42629 2.81102 3.16314 3.37514 3.90773 4.06592 4.15039 4.31905 4.33519 4.42431 4.50049 4.51398 4.53374 4.56663 4.63115 4.69961 4.80714 4.84086 4.86910 5.05239 5.13932 5.26595 5.50692 5.55317 5.63664 5.69074 5.86373 5.94813 6.09443 6.22611 6.30098 6.40308 6.57615 6.79846 7.12500 7.47644 8.90853 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016451 B = 0.005310 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.608513 B = 5271.634488 C = 5954.357671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.069 3.931 4 C 0.056 3.944 5 O -0.366 6.366 6 C 0.469 3.531 7 O -0.530 6.530 8 C -0.106 4.106 9 C 0.086 3.914 10 H 0.026 0.974 11 C -0.501 4.501 12 H 0.035 0.965 13 C 0.031 3.969 14 N -0.885 5.885 15 Si 0.931 3.069 16 H -0.288 1.288 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.051 4.051 20 C -0.148 4.148 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.084 4.084 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.263 0.737 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.126 0.874 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 6.232 -2.347 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.007 4.007 4 C -0.018 4.018 5 O -0.284 6.284 6 C 0.314 3.686 7 O -0.419 6.419 8 C -0.144 4.144 9 C 0.067 3.933 10 H 0.044 0.956 11 C -0.538 4.538 12 H 0.054 0.946 13 C -0.169 4.169 14 N -0.523 5.523 15 Si 0.759 3.241 16 H -0.214 1.214 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.051 4.051 20 C -0.166 4.166 21 C -0.157 4.157 22 C -0.165 4.165 23 C -0.164 4.164 24 C -0.102 4.102 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.152 0.848 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.669 6.004 -2.104 10.753 hybrid contribution 0.249 -0.564 1.389 1.519 sum -8.420 5.440 -0.715 10.050 Atomic orbital electron populations 1.22940 0.79069 1.03716 1.01284 1.87968 1.21982 1.28600 1.95693 1.22697 0.89438 0.85315 1.03255 1.23255 0.95195 0.98658 0.84706 1.86564 1.26167 1.74313 1.41320 1.24290 0.79653 0.74576 0.90089 1.90548 1.58542 1.48253 1.44549 1.21646 0.99254 1.03191 0.90281 1.17599 0.89990 0.94670 0.90999 0.95572 1.20980 1.28081 0.96914 1.07870 0.94648 1.25326 0.95673 0.98464 0.97427 1.69748 1.35026 1.17432 1.30092 0.86030 0.78315 0.78806 0.80984 1.21448 1.20159 1.20297 1.20186 0.94424 0.96554 0.93955 1.21070 0.95942 1.02298 0.97334 1.21171 1.00246 0.99337 0.94936 1.21210 0.94801 0.99818 1.00671 1.21352 0.96933 1.01159 0.96997 1.21320 1.01482 0.94922 0.92476 0.89262 0.92205 0.92839 0.87982 0.90787 0.92677 0.88556 0.85518 0.89337 0.92671 0.87491 0.84814 0.84545 0.85650 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 113.37 1.25 1.72 16 2 O -0.42 -12.16 10.67 -145.57 -1.55 -13.71 16 3 C 0.07 1.63 6.33 71.98 0.46 2.08 16 4 C 0.06 1.77 5.84 71.98 0.42 2.19 16 5 O -0.37 -14.71 10.19 -48.70 -0.50 -15.21 16 6 C 0.47 21.66 7.71 71.24 0.55 22.21 16 7 O -0.53 -27.10 14.73 21.97 0.32 -26.77 16 8 C -0.11 -4.87 4.18 29.85 0.12 -4.74 16 9 C 0.09 4.29 1.97 -12.29 -0.02 4.27 16 10 H 0.03 1.32 7.91 -2.39 -0.02 1.30 16 11 C -0.50 -27.88 7.27 25.60 0.19 -27.69 16 12 H 0.04 2.08 7.82 -2.91 -0.02 2.06 16 13 C 0.03 1.69 5.12 84.66 0.43 2.12 16 14 N -0.88 -46.45 7.99 21.45 0.17 -46.28 16 15 Si 0.93 45.01 29.54 68.60 2.03 47.03 16 16 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 C -0.05 -2.34 4.69 -19.86 -0.09 -2.44 16 20 C -0.15 -6.23 9.71 22.27 0.22 -6.02 16 21 C -0.14 -4.96 10.05 22.27 0.22 -4.74 16 22 C -0.15 -5.02 10.05 22.27 0.22 -4.79 16 23 C -0.15 -5.50 10.05 22.27 0.22 -5.28 16 24 C -0.08 -3.66 7.45 22.27 0.17 -3.50 16 25 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.94 8.13 -2.39 -0.02 1.92 16 31 H 0.10 2.68 8.13 -2.39 -0.02 2.66 16 32 H 0.13 6.27 4.71 -2.39 -0.01 6.26 16 33 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 34 H 0.26 13.45 8.31 -92.71 -0.77 12.67 16 35 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 37 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.13 5.84 5.18 -2.91 -0.02 5.82 16 Total: -1.00 -65.41 327.15 5.86 -59.55 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.03 Total: 19.99 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.35 Total: -24.60 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.17 Total: -46.28 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.73 Total: -55.69 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.41 5.86 -59.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795979768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.252 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds