Wall clock time and date at job start Mon Mar 30 2020 23:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42892 * 114.00046 * 2 1 4 4 C 1.53002 * 109.46986 * 179.97438 * 3 2 1 5 5 O 1.45201 * 109.46637 * 65.00423 * 4 3 2 6 6 C 1.34234 * 116.99588 * 179.97438 * 5 4 3 7 7 O 1.20824 * 119.99958 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99948 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.46995 * 179.97438 * 8 6 5 10 10 H 1.08998 * 109.47363 * 54.05802 * 9 8 6 11 11 C 1.50705 * 109.47281 * 294.05789 * 9 8 6 12 12 H 1.07996 * 119.99568 * 330.07534 * 11 9 8 13 13 C 1.37877 * 119.99831 * 150.08226 * 11 9 8 14 14 N 1.31508 * 120.00174 * 6.54999 * 13 11 9 15 15 Si 1.86806 * 119.99365 * 186.55534 * 13 11 9 16 16 H 1.48503 * 109.46588 * 179.97438 * 15 13 11 17 17 H 1.48500 * 109.46990 * 299.99410 * 15 13 11 18 18 H 1.48496 * 109.47189 * 59.99915 * 15 13 11 19 19 C 1.50704 * 109.47072 * 174.05777 * 9 8 6 20 20 C 1.38238 * 119.99714 * 64.29653 * 19 9 8 21 21 C 1.38234 * 119.99537 * 179.80946 * 20 19 9 22 22 C 1.38238 * 120.00115 * 0.39931 * 21 20 19 23 23 C 1.38237 * 119.99909 * 359.86107 * 22 21 20 24 24 C 1.38229 * 119.99861 * 359.94762 * 23 22 21 25 25 H 1.08996 * 109.46804 * 299.99690 * 1 2 3 26 26 H 1.08996 * 109.46702 * 60.00048 * 1 2 3 27 27 H 1.09002 * 109.47082 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47501 * 59.99946 * 3 2 1 29 29 H 1.09003 * 109.47257 * 300.00137 * 3 2 1 30 30 H 1.08997 * 109.47399 * 304.99866 * 4 3 2 31 31 H 1.09002 * 109.47136 * 184.99785 * 4 3 2 32 32 H 1.08999 * 109.46642 * 59.99918 * 8 6 5 33 33 H 1.09002 * 109.46876 * 299.99811 * 8 6 5 34 34 H 0.96995 * 120.00004 * 354.73307 * 14 13 11 35 35 H 1.08000 * 120.00129 * 0.02562 * 20 19 9 36 36 H 1.08004 * 120.00058 * 180.23627 * 21 20 19 37 37 H 1.08006 * 119.99774 * 179.82823 * 22 21 20 38 38 H 1.07995 * 119.99599 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.99707 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9727 0.5694 -1.2398 6 6 5.2935 0.3906 -1.3989 7 8 6.0590 0.7371 -0.5306 8 6 5.8217 -0.2422 -2.6606 9 6 7.3475 -0.3279 -2.5880 10 1 7.6394 -0.8429 -1.6728 11 6 7.9294 1.0623 -2.5894 12 1 7.4127 1.8634 -3.0970 13 6 9.1214 1.3114 -1.9428 14 7 9.8152 0.3157 -1.4361 15 14 9.7508 3.0633 -1.7866 16 1 11.0426 3.0615 -1.0541 17 1 9.9496 3.6404 -3.1403 18 1 8.7604 3.8804 -1.0406 19 6 7.8652 -1.0903 -3.7804 20 6 7.6945 -0.5805 -5.0539 21 6 8.1728 -1.2779 -6.1474 22 6 8.8144 -2.4892 -5.9680 23 6 8.9803 -3.0015 -4.6948 24 6 8.5055 -2.3022 -3.6011 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8509 0.5684 0.8427 31 1 3.9786 2.1764 0.0902 32 1 5.5326 0.3636 -3.5194 33 1 5.4058 -1.2442 -2.7661 34 1 9.4529 -0.5840 -1.4493 35 1 7.1906 0.3644 -5.1943 36 1 8.0429 -0.8778 -7.1421 37 1 9.1857 -3.0354 -6.8225 38 1 9.4812 -3.9480 -4.5547 39 1 8.6355 -2.7023 -2.6064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795979769.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:23 Heat of formation + Delta-G solvation = -136.078414 kcal Electronic energy + Delta-G solvation = -21387.626591 eV Core-core repulsion = 18066.388785 eV Total energy + Delta-G solvation = -3321.237807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43921 -40.03662 -38.91273 -37.43438 -36.10813 -33.40796 -31.84074 -31.60834 -30.46819 -27.46513 -27.00749 -25.03038 -23.71891 -23.19966 -22.17717 -21.29716 -18.89849 -18.64945 -17.95333 -17.59083 -17.21666 -16.82992 -16.55776 -16.07320 -15.72078 -15.66530 -15.50754 -14.93114 -14.25185 -14.23768 -14.04840 -13.91977 -13.47710 -13.30345 -13.14527 -12.83406 -12.62080 -12.57868 -12.26959 -12.10164 -11.95619 -11.76056 -11.62521 -11.52739 -11.31328 -10.69136 -10.66677 -10.40665 -9.64253 -9.29905 -8.48525 -6.16187 0.67653 0.72053 1.40412 1.49346 1.59229 1.74841 1.79200 2.60024 2.76646 3.09531 3.35246 3.83067 3.95512 4.06699 4.10048 4.24979 4.28171 4.31370 4.37450 4.43485 4.47082 4.51675 4.55748 4.57845 4.65117 4.79828 4.84466 4.86487 5.00731 5.19115 5.36392 5.39281 5.50609 5.74503 5.80920 5.90814 6.17907 6.19537 6.27795 6.36891 6.72944 6.98913 7.60553 8.91634 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013975 B = 0.005259 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.160877 B = 5322.832204 C = 6783.294678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.070 3.930 4 C 0.057 3.943 5 O -0.361 6.361 6 C 0.462 3.538 7 O -0.519 6.519 8 C -0.086 4.086 9 C 0.070 3.930 10 H 0.012 0.988 11 C -0.568 4.568 12 H 0.044 0.956 13 C -0.022 4.022 14 N -0.938 5.938 15 Si 1.100 2.900 16 H -0.289 1.289 17 H -0.267 1.267 18 H -0.282 1.282 19 C -0.056 4.056 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.143 4.143 23 C -0.125 4.125 24 C -0.151 4.151 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.258 0.742 35 H 0.116 0.884 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.136 0.864 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.265 -1.019 -3.930 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.006 4.006 4 C -0.017 4.017 5 O -0.279 6.279 6 C 0.305 3.695 7 O -0.406 6.406 8 C -0.123 4.123 9 C 0.051 3.949 10 H 0.031 0.969 11 C -0.606 4.606 12 H 0.062 0.938 13 C -0.221 4.221 14 N -0.576 5.576 15 Si 0.924 3.076 16 H -0.214 1.214 17 H -0.192 1.192 18 H -0.208 1.208 19 C -0.056 4.056 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.161 4.161 23 C -0.143 4.143 24 C -0.170 4.170 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.119 0.881 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.161 0.839 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.684 -0.158 -3.100 14.032 hybrid contribution -1.108 -0.645 0.200 1.298 sum -14.792 -0.803 -2.899 15.095 Atomic orbital electron populations 1.22951 0.78992 1.03881 1.01226 1.87930 1.21986 1.28291 1.95701 1.22661 0.89224 0.85454 1.03243 1.23261 0.95180 0.98642 0.84607 1.86543 1.25478 1.74191 1.41674 1.24081 0.79893 0.75917 0.89600 1.90687 1.58473 1.47200 1.44248 1.21417 0.97021 1.01233 0.92675 1.17781 0.89856 0.95590 0.91662 0.96930 1.21828 1.09503 0.93525 1.35701 0.93784 1.26802 0.94807 1.07399 0.93082 1.70853 1.38564 1.01273 1.46922 0.83153 0.75583 0.71503 0.77319 1.21442 1.19218 1.20818 1.20495 0.96348 0.92772 0.96009 1.21029 1.01315 0.99564 0.92134 1.21415 0.98371 0.95460 0.98966 1.21330 1.00738 0.96776 0.97245 1.21301 0.99874 1.00364 0.92758 1.21130 1.01275 0.95878 0.98694 0.92379 0.92957 0.88867 0.88092 0.90930 0.91911 0.89395 0.87406 0.88104 0.93113 0.86646 0.83861 0.83488 0.84647 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -10.50 10.67 -145.56 -1.55 -12.06 16 3 C 0.07 1.51 6.33 71.98 0.46 1.97 16 4 C 0.06 1.70 5.84 71.98 0.42 2.12 16 5 O -0.36 -13.22 10.19 -48.80 -0.50 -13.72 16 6 C 0.46 20.08 7.71 71.24 0.55 20.63 16 7 O -0.52 -26.95 14.77 21.97 0.32 -26.63 16 8 C -0.09 -3.54 5.05 29.85 0.15 -3.38 16 9 C 0.07 3.48 1.31 -12.29 -0.02 3.46 16 10 H 0.01 0.71 6.23 -2.39 -0.01 0.70 16 11 C -0.57 -31.40 6.41 25.60 0.16 -31.23 16 12 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 13 C -0.02 -1.29 5.45 84.66 0.46 -0.83 16 14 N -0.94 -59.19 13.63 21.45 0.29 -58.90 16 15 Si 1.10 53.00 29.91 68.60 2.05 55.06 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 19 C -0.06 -2.50 4.77 -19.86 -0.09 -2.59 16 20 C -0.12 -4.85 8.88 22.27 0.20 -4.65 16 21 C -0.12 -4.06 10.05 22.27 0.22 -3.84 16 22 C -0.14 -4.42 10.05 22.27 0.22 -4.19 16 23 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 24 C -0.15 -6.42 9.67 22.27 0.22 -6.21 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 31 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16 32 H 0.11 4.04 7.87 -2.39 -0.02 4.02 16 33 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 34 H 0.26 16.42 6.68 -92.71 -0.62 15.80 16 35 H 0.12 4.46 7.80 -2.91 -0.02 4.43 16 36 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 37 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 38 H 0.14 3.87 8.06 -2.91 -0.02 3.84 16 39 H 0.10 4.23 7.95 -2.91 -0.02 4.21 16 Total: -1.00 -74.53 336.71 6.21 -68.31 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 1.17 Total: 19.16 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.42 Total: -31.22 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.29 Total: -58.90 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.73 Total: -52.41 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 2.05 Total: 55.06 kcal Total: -74.53 6.21 -68.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795979769.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.765 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds