Wall clock time and date at job start Tue Mar 31 2020 00:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47399 * 240.00737 * 3 2 1 5 5 H 1.48506 * 109.46719 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47026 * 120.00323 * 3 2 1 7 7 C 1.37877 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46873 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47036 * 179.97438 * 10 9 7 12 12 O 1.45193 * 109.47295 * 180.02562 * 11 10 9 13 13 C 1.34795 * 117.00171 * 180.02562 * 12 11 10 14 14 O 1.21542 * 119.99790 * 0.02562 * 13 12 11 15 15 C 1.47169 * 119.99908 * 179.97438 * 13 12 11 16 16 C 1.36652 * 126.21800 * 179.97438 * 15 13 12 17 17 N 1.34828 * 106.78352 * 179.97438 * 16 15 13 18 18 C 1.36392 * 107.85598 * 0.04512 * 17 16 15 19 19 N 1.29713 * 108.93537 * 359.96224 * 18 17 16 20 20 C 1.51109 * 123.84701 * 179.86602 * 18 17 16 21 21 C 1.53390 * 108.23363 * 344.11350 * 20 18 17 22 22 C 1.53137 * 109.25328 * 48.92743 * 21 20 18 23 23 C 1.46581 * 127.49101 * 180.13201 * 17 16 15 24 24 H 0.96995 * 119.99601 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47535 * 59.99492 * 9 7 2 26 26 H 1.09002 * 109.46844 * 299.99767 * 9 7 2 27 27 H 1.09001 * 109.47269 * 60.00010 * 10 9 7 28 28 H 1.08992 * 109.47362 * 299.99470 * 10 9 7 29 29 H 1.08999 * 109.47073 * 59.99756 * 11 10 9 30 30 H 1.09002 * 109.47143 * 300.00131 * 11 10 9 31 31 H 1.07999 * 126.61158 * 359.94256 * 16 15 13 32 32 H 1.09002 * 109.71715 * 224.41761 * 20 18 17 33 33 H 1.09001 * 109.71979 * 103.81468 * 20 18 17 34 34 H 1.08994 * 109.50382 * 168.85684 * 21 20 18 35 35 H 1.08999 * 109.50850 * 288.99369 * 21 20 18 36 36 H 1.09004 * 109.46574 * 50.21257 * 22 21 20 37 37 H 1.08995 * 109.46017 * 170.17730 * 22 21 20 38 38 H 1.09000 * 109.58670 * 42.95880 * 23 17 16 39 39 H 1.09001 * 109.58192 * 282.54220 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 8 2.4240 -6.0907 -0.0037 13 6 1.9088 -7.3363 -0.0047 14 8 0.7039 -7.4955 -0.0057 15 6 2.8054 -8.5034 -0.0057 16 6 2.4230 -9.8153 -0.0063 17 7 3.5533 -10.5503 -0.0077 18 6 4.6116 -9.6899 -0.0070 19 7 4.1643 -8.4723 -0.0060 20 6 6.0564 -10.1328 -0.0052 21 6 6.1041 -11.6129 0.3944 22 6 5.0871 -12.3948 -0.4420 23 6 3.6672 -12.0116 -0.0115 24 1 -0.4849 0.8400 0.0004 25 1 0.6247 -2.5564 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 2.8721 -3.6050 0.8873 28 1 2.8720 -3.6035 -0.8926 29 1 0.8535 -5.0443 -0.8931 30 1 0.8541 -5.0454 0.8869 31 1 1.4105 -10.1911 -0.0053 32 1 6.6220 -9.5395 0.7133 33 1 6.4809 -10.0068 -1.0012 34 1 7.1041 -12.0067 0.2129 35 1 5.8592 -11.7126 1.4518 36 1 5.2238 -12.1558 -1.4967 37 1 5.2368 -13.4636 -0.2898 38 1 2.9467 -12.4325 -0.7128 39 1 3.4728 -12.3958 0.9899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799587177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:33 Heat of formation + Delta-G solvation = -49.811023 kcal Electronic energy + Delta-G solvation = -20496.647148 eV Core-core repulsion = 17211.442927 eV Total energy + Delta-G solvation = -3285.204221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.68567 -39.72195 -37.02566 -36.14829 -33.91185 -33.74233 -31.61396 -30.42894 -29.01964 -27.10529 -25.27438 -23.80478 -22.67130 -22.56757 -20.33063 -20.01885 -19.47991 -17.76249 -16.84043 -16.56216 -16.33398 -15.96345 -15.75516 -14.85664 -14.68094 -14.41274 -14.30316 -14.05137 -13.90261 -13.77172 -12.92801 -12.39437 -12.09172 -11.93004 -11.78665 -11.73653 -11.65423 -11.57524 -10.87504 -10.64913 -10.50862 -10.45239 -10.26824 -10.21961 -10.00553 -9.57851 -9.41223 -9.08606 -8.72138 -8.30641 -5.95848 -3.98292 1.31668 2.15677 2.21628 3.10945 3.38453 3.40813 3.41926 3.45373 3.79090 3.99774 4.06338 4.11324 4.49859 4.51442 4.64563 4.76598 4.80343 4.99543 5.11421 5.14606 5.26285 5.31639 5.39878 5.49429 5.58589 5.73343 5.77609 5.79687 6.12382 6.21480 6.61629 6.68938 6.74239 6.97393 7.12129 7.61374 7.69986 7.82085 8.03293 8.18015 8.45444 9.07899 9.65356 11.15689 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039422 B = 0.002627 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.087860 B =10655.785265 C =11301.558172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.108 4.108 11 C 0.068 3.932 12 O -0.338 6.338 13 C 0.550 3.450 14 O -0.518 6.518 15 C -0.044 4.044 16 C 0.044 3.956 17 N -0.455 5.455 18 C 0.207 3.793 19 N -0.434 5.434 20 C -0.034 4.034 21 C -0.126 4.126 22 C -0.136 4.136 23 C 0.101 3.899 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.192 0.808 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.970 -30.390 -0.065 32.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.006 4.006 12 O -0.253 6.253 13 C 0.394 3.606 14 O -0.408 6.408 15 C -0.171 4.171 16 C -0.095 4.095 17 N -0.138 5.138 18 C -0.057 4.057 19 N -0.153 5.153 20 C -0.073 4.073 21 C -0.164 4.164 22 C -0.174 4.174 23 C -0.021 4.021 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.209 0.791 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.913 -29.660 -0.066 31.604 hybrid contribution -0.423 0.260 -0.003 0.497 sum 10.489 -29.400 -0.068 31.215 Atomic orbital electron populations 1.69964 1.06066 1.26764 1.50723 1.25033 0.94882 0.99316 0.95298 0.86604 0.79511 0.82906 0.78661 1.20192 1.21321 1.20198 1.21162 0.93132 0.90722 1.50769 0.92456 1.19049 0.93851 0.90746 0.97635 1.21747 0.99871 0.90900 1.02068 1.23516 0.91266 0.83730 1.02044 1.86669 1.41617 1.14325 1.82695 1.19581 0.85542 0.82953 0.72507 1.90842 1.15331 1.87055 1.47541 1.19559 0.90323 0.90783 1.16420 1.22384 0.92270 0.90724 1.04147 1.45429 1.06322 1.08062 1.53965 1.23668 0.92056 0.84160 1.05777 1.70515 1.08326 1.19915 1.16508 1.20266 0.86849 0.95860 1.04304 1.21693 1.00227 0.94094 1.00423 1.21915 0.92451 1.01602 1.01408 1.22125 0.99840 0.76418 1.03716 0.92913 0.96247 0.96236 0.92120 0.92115 0.91538 0.91545 0.79070 0.88204 0.88879 0.89659 0.90950 0.90343 0.88999 0.88698 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.11 -2.46 5.53 -26.73 -0.15 -2.60 16 11 C 0.07 1.40 5.48 37.16 0.20 1.60 16 12 O -0.34 -6.87 10.23 -40.75 -0.42 -7.29 16 13 C 0.55 10.29 7.95 34.36 0.27 10.56 16 14 O -0.52 -10.26 16.67 -19.30 -0.32 -10.58 16 15 C -0.04 -0.69 7.02 -83.00 -0.58 -1.27 16 16 C 0.04 0.51 11.32 -16.81 -0.19 0.32 16 17 N -0.46 -4.13 3.12 -113.40 -0.35 -4.48 16 18 C 0.21 2.29 7.65 -154.62 -1.18 1.11 16 19 N -0.43 -6.76 11.32 -7.02 -0.08 -6.84 16 20 C -0.03 -0.23 6.33 -27.48 -0.17 -0.40 16 21 C -0.13 -0.45 5.96 -26.46 -0.16 -0.61 16 22 C -0.14 -0.38 5.93 -26.54 -0.16 -0.54 16 23 C 0.10 0.42 6.96 -3.87 -0.03 0.40 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.19 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 35 H 0.07 0.27 8.12 -51.93 -0.42 -0.15 16 36 H 0.08 0.26 8.11 -51.93 -0.42 -0.16 16 37 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -36.20 333.18 -9.01 -45.20 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -5.88 Total: -6.45 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.69 Total: -4.91 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.30 Total: -38.19 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.74 Total: -17.87 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.20 -9.01 -45.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799587177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.607 kcal (2) G-P(sol) polarization free energy of solvation -36.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds