Wall clock time and date at job start Tue Mar 31 2020 00:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86804 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47399 * 240.00737 * 3 2 1 5 5 H 1.48506 * 109.46719 * 0.02562 * 3 2 1 6 6 H 1.48492 * 109.47026 * 120.00323 * 3 2 1 7 7 C 1.37877 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99962 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.46873 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47036 * 179.97438 * 10 9 7 12 12 O 1.45193 * 109.47295 * 180.02562 * 11 10 9 13 13 C 1.34795 * 117.00171 * 180.02562 * 12 11 10 14 14 O 1.21542 * 119.99790 * 0.02562 * 13 12 11 15 15 C 1.47169 * 119.99908 * 179.97438 * 13 12 11 16 16 C 1.36652 * 126.21800 * 179.97438 * 15 13 12 17 17 N 1.34828 * 106.78352 * 179.97438 * 16 15 13 18 18 C 1.36392 * 107.85598 * 0.04512 * 17 16 15 19 19 N 1.29713 * 108.93537 * 359.96224 * 18 17 16 20 20 C 1.51109 * 123.84701 * 179.86602 * 18 17 16 21 21 C 1.53390 * 108.23363 * 344.11350 * 20 18 17 22 22 C 1.53137 * 109.25328 * 48.92743 * 21 20 18 23 23 C 1.46581 * 127.49101 * 180.13201 * 17 16 15 24 24 H 0.96995 * 119.99601 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47535 * 59.99492 * 9 7 2 26 26 H 1.09002 * 109.46844 * 299.99767 * 9 7 2 27 27 H 1.09001 * 109.47269 * 60.00010 * 10 9 7 28 28 H 1.08992 * 109.47362 * 299.99470 * 10 9 7 29 29 H 1.08999 * 109.47073 * 59.99756 * 11 10 9 30 30 H 1.09002 * 109.47143 * 300.00131 * 11 10 9 31 31 H 1.07999 * 126.61158 * 359.94256 * 16 15 13 32 32 H 1.09002 * 109.71715 * 224.41761 * 20 18 17 33 33 H 1.09001 * 109.71979 * 103.81468 * 20 18 17 34 34 H 1.08994 * 109.50382 * 168.85684 * 21 20 18 35 35 H 1.08999 * 109.50850 * 288.99369 * 21 20 18 36 36 H 1.09004 * 109.46574 * 50.21257 * 22 21 20 37 37 H 1.08995 * 109.46017 * 170.17730 * 22 21 20 38 38 H 1.09000 * 109.58670 * 42.95880 * 23 17 16 39 39 H 1.09001 * 109.58192 * 282.54220 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4804 -4.9871 -0.0033 12 8 2.4240 -6.0907 -0.0037 13 6 1.9088 -7.3363 -0.0047 14 8 0.7039 -7.4955 -0.0057 15 6 2.8054 -8.5034 -0.0057 16 6 2.4230 -9.8153 -0.0063 17 7 3.5533 -10.5503 -0.0077 18 6 4.6116 -9.6899 -0.0070 19 7 4.1643 -8.4723 -0.0060 20 6 6.0564 -10.1328 -0.0052 21 6 6.1041 -11.6129 0.3944 22 6 5.0871 -12.3948 -0.4420 23 6 3.6672 -12.0116 -0.0115 24 1 -0.4849 0.8400 0.0004 25 1 0.6247 -2.5564 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 2.8721 -3.6050 0.8873 28 1 2.8720 -3.6035 -0.8926 29 1 0.8535 -5.0443 -0.8931 30 1 0.8541 -5.0454 0.8869 31 1 1.4105 -10.1911 -0.0053 32 1 6.6220 -9.5395 0.7133 33 1 6.4809 -10.0068 -1.0012 34 1 7.1041 -12.0067 0.2129 35 1 5.8592 -11.7126 1.4518 36 1 5.2238 -12.1558 -1.4967 37 1 5.2368 -13.4636 -0.2898 38 1 2.9467 -12.4325 -0.7128 39 1 3.4728 -12.3958 0.9899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799587177.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:33 Heat of formation + Delta-G solvation = -71.668120 kcal Electronic energy + Delta-G solvation = -20497.594943 eV Core-core repulsion = 17211.442927 eV Total energy + Delta-G solvation = -3286.152016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.53614 -41.19943 -37.88309 -37.37507 -35.93618 -34.48060 -33.68225 -31.22349 -29.72834 -29.02947 -26.30047 -25.08186 -24.04408 -23.17608 -22.18128 -21.39156 -20.09287 -18.82190 -18.58997 -17.85141 -17.75150 -17.12501 -16.90184 -16.49736 -15.70421 -15.33632 -15.07743 -14.99045 -14.80296 -14.63098 -14.28327 -13.99793 -13.84784 -13.72565 -12.84906 -12.77670 -12.53545 -12.42717 -12.11164 -12.08036 -12.00279 -11.98386 -11.86172 -11.51711 -11.43189 -11.30162 -11.18683 -10.78741 -10.57086 -9.65936 -8.21826 -6.33674 0.22725 1.17766 1.39005 1.41801 1.44858 1.52887 1.85868 2.19633 2.41662 3.08425 3.11391 3.52933 3.58589 3.81262 3.90019 3.97615 4.03524 4.04338 4.25784 4.35754 4.38659 4.44712 4.47036 4.77157 4.81836 4.86332 4.89304 4.97813 5.04615 5.07332 5.13134 5.26081 5.32623 5.40080 5.48749 5.62194 5.78939 5.97961 6.18883 6.54160 6.80858 6.89857 7.35367 8.90373 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039422 B = 0.002627 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.087860 B =10655.785265 C =11301.558172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.350 6.350 13 C 0.546 3.454 14 O -0.539 6.539 15 C -0.096 4.096 16 C 0.072 3.928 17 N -0.445 5.445 18 C 0.212 3.788 19 N -0.488 5.488 20 C -0.037 4.037 21 C -0.121 4.121 22 C -0.132 4.132 23 C 0.089 3.911 24 H 0.265 0.735 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.116 0.884 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.773 -32.737 -0.083 35.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.130 4.130 11 C 0.004 3.996 12 O -0.266 6.266 13 C 0.393 3.607 14 O -0.430 6.430 15 C -0.221 4.221 16 C -0.071 4.071 17 N -0.126 5.126 18 C -0.053 4.053 19 N -0.207 5.207 20 C -0.076 4.076 21 C -0.158 4.158 22 C -0.170 4.170 23 C -0.030 4.030 24 H 0.074 0.926 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.235 0.765 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.740 -32.053 -0.083 34.492 hybrid contribution -0.956 0.821 0.002 1.260 sum 11.785 -31.232 -0.081 33.382 Atomic orbital electron populations 1.70099 1.07855 1.28053 1.51293 1.26033 0.95853 1.03549 0.94478 0.85410 0.78192 0.77613 0.79282 1.19059 1.20638 1.19068 1.21582 0.93686 0.91917 1.51185 0.91885 1.18917 0.94127 0.92239 0.95576 1.21452 0.98797 0.90552 1.02247 1.23199 0.90928 0.83528 1.01992 1.86649 1.41554 1.15098 1.83292 1.20141 0.86016 0.82887 0.71670 1.90805 1.16161 1.87132 1.48950 1.19444 0.90643 0.91021 1.21036 1.22726 0.93930 0.89434 1.00971 1.45798 1.04941 1.09979 1.51859 1.24408 0.94021 0.83429 1.03429 1.70400 1.08502 1.22913 1.18935 1.20533 0.84032 0.98160 1.04890 1.21710 1.01928 0.91687 1.00512 1.21968 0.90956 1.03176 1.00871 1.22659 1.01659 0.73071 1.05656 0.92594 0.98309 0.98301 0.91859 0.91850 0.91621 0.91630 0.76515 0.88498 0.88020 0.87397 0.90925 0.90714 0.85942 0.86612 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.49 13.29 21.45 0.28 -58.20 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 45.61 29.54 68.60 2.03 47.63 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.51 9.11 25.60 0.23 -32.28 16 8 H 0.06 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.61 4.97 29.85 0.15 1.75 16 10 C -0.09 -4.35 5.53 30.59 0.17 -4.18 16 11 C 0.08 3.32 5.48 71.98 0.39 3.71 16 12 O -0.35 -14.85 10.23 -57.06 -0.58 -15.44 16 13 C 0.55 21.25 7.95 70.17 0.56 21.81 16 14 O -0.54 -22.04 16.67 19.70 0.33 -21.71 16 15 C -0.10 -3.09 7.02 40.49 0.28 -2.81 16 16 C 0.07 1.57 11.32 83.86 0.95 2.52 16 17 N -0.45 -7.12 3.12 -512.69 -1.60 -8.72 16 18 C 0.21 4.48 7.65 138.05 1.06 5.54 16 19 N -0.49 -15.50 11.32 -176.12 -1.99 -17.49 16 20 C -0.04 -0.43 6.33 30.11 0.19 -0.24 16 21 C -0.12 -0.45 5.96 30.77 0.18 -0.27 16 22 C -0.13 -0.19 5.93 30.72 0.18 -0.01 16 23 C 0.09 0.41 6.96 86.44 0.60 1.01 16 24 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.22 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.07 0.31 8.12 -2.39 -0.02 0.29 16 36 H 0.07 0.22 8.11 -2.38 -0.02 0.20 16 37 H 0.12 -0.46 8.14 -2.39 -0.02 -0.48 16 38 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -81.29 333.18 4.91 -76.38 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: 1.03 Total: 0.61 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 5.41 Total: -3.05 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -3.31 Total: -84.42 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.26 Total: -37.15 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -81.29 4.91 -76.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799587177.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.710 kcal (2) G-P(sol) polarization free energy of solvation -81.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds