Wall clock time and date at job start Mon Mar 30 2020 23:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00337 * 2 1 4 4 H 1.48501 * 109.47184 * 269.99939 * 3 2 1 5 5 H 1.48500 * 109.46945 * 29.99625 * 3 2 1 6 6 H 1.48499 * 109.47302 * 149.99754 * 3 2 1 7 7 C 1.38957 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99502 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99322 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00268 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99308 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46715 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00125 * 180.02562 * 13 12 10 15 15 O 1.21616 * 119.99779 * 0.02562 * 14 13 12 16 16 C 1.47094 * 120.00183 * 180.02562 * 14 13 12 17 17 C 1.32997 * 119.99880 * 173.88104 * 16 14 13 18 18 C 1.50692 * 120.00275 * 352.36636 * 17 16 14 19 19 C 1.53002 * 117.49763 * 300.62567 * 18 17 16 20 20 C 1.53001 * 59.99970 * 252.50785 * 19 18 17 21 21 C 1.50707 * 119.99911 * 172.36471 * 17 16 14 22 22 C 1.53001 * 117.49836 * 182.32690 * 21 17 16 23 23 C 1.53001 * 60.00078 * 252.51175 * 22 21 17 24 24 H 0.97003 * 119.99880 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00132 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47207 * 60.00588 * 12 10 9 27 27 H 1.08992 * 109.47457 * 299.99735 * 12 10 9 28 28 H 0.97004 * 119.99841 * 0.02562 * 13 12 10 29 29 H 1.07997 * 119.99939 * 353.87621 * 16 14 13 30 30 H 1.09002 * 115.56617 * 86.31546 * 18 17 16 31 31 H 1.09003 * 117.49692 * 145.02184 * 19 18 17 32 32 H 1.08993 * 117.49886 * 0.02562 * 19 18 17 33 33 H 1.09005 * 117.49455 * 107.49373 * 20 19 18 34 34 H 1.08998 * 117.50019 * 252.48592 * 20 19 18 35 35 H 1.08999 * 115.54750 * 328.03730 * 21 17 16 36 36 H 1.08998 * 117.49758 * 0.02562 * 22 21 17 37 37 H 1.08997 * 117.49363 * 145.02300 * 22 21 17 38 38 H 1.09003 * 117.49800 * 252.51504 * 23 22 21 39 39 H 1.08999 * 117.49677 * 107.49201 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1955 -5.9766 -0.0016 14 6 1.7463 -7.2472 -0.0027 15 8 0.5506 -7.4694 -0.0038 16 6 2.7021 -8.3653 -0.0026 17 6 2.2636 -9.6150 0.1191 18 6 0.8124 -9.8775 0.4287 19 6 0.2497 -9.2925 1.7256 20 6 0.4972 -10.7979 1.6096 21 6 3.2181 -10.7685 -0.0527 22 6 2.6422 -12.1826 0.0454 23 6 3.5124 -11.6309 1.1764 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9209 0.8885 28 1 3.1492 -5.7993 -0.0012 29 1 3.7599 -8.1714 -0.1015 30 1 0.1476 -9.9204 -0.4341 31 1 -0.7853 -8.9505 1.7160 32 1 0.9290 -8.7174 2.3546 33 1 1.3396 -11.2135 2.1626 34 1 -0.3748 -11.4462 1.5241 35 1 4.0320 -10.6040 -0.7588 36 1 1.5729 -12.2785 0.2337 37 1 3.0772 -12.9487 -0.5964 38 1 4.5200 -12.0341 1.2786 39 1 3.0157 -11.3640 2.1092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:01 Heat of formation + Delta-G solvation = -3.868390 kcal Electronic energy + Delta-G solvation = -20822.726022 eV Core-core repulsion = 17539.514023 eV Total energy + Delta-G solvation = -3283.211999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.03320 -38.76168 -37.88265 -35.82616 -34.36157 -33.56506 -32.31002 -31.36163 -27.93998 -25.07331 -23.84920 -22.90732 -22.38176 -22.28014 -20.31238 -19.61731 -18.62355 -18.01704 -17.05830 -16.18637 -15.52416 -15.33275 -15.09473 -15.04135 -14.59690 -14.30733 -14.10956 -13.70627 -13.59355 -13.00635 -12.73804 -12.16076 -12.00876 -11.91486 -11.62640 -11.45954 -11.32062 -11.20177 -11.11743 -10.71357 -10.45672 -10.39279 -10.30095 -10.21491 -9.62872 -9.22977 -9.07770 -8.61705 -8.58237 -8.09278 -6.50871 -3.92800 1.31691 3.12099 3.22187 3.27180 3.42399 3.49374 3.70557 3.77116 3.83709 4.12271 4.43196 4.50334 4.63258 4.74019 4.90411 4.95184 4.99448 5.17813 5.21750 5.27303 5.36554 5.37880 5.58491 5.64960 5.84080 5.87629 5.92481 5.98066 5.99909 6.09468 6.15999 6.22946 6.33313 6.39793 6.77747 7.46609 7.92800 7.94579 8.45902 8.58232 9.05416 9.40389 9.88472 10.66127 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043716 B = 0.002915 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.345380 B = 9602.647894 C =10029.122092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.111 3.889 13 N -0.706 5.706 14 C 0.540 3.460 15 O -0.539 6.539 16 C -0.205 4.205 17 C 0.015 3.985 18 C -0.101 4.101 19 C -0.134 4.134 20 C -0.201 4.201 21 C -0.128 4.128 22 C -0.172 4.172 23 C -0.171 4.171 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.410 0.590 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -21.047 1.511 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.017 4.017 13 N -0.359 5.359 14 C 0.329 3.671 15 O -0.418 6.418 16 C -0.226 4.226 17 C 0.013 3.987 18 C -0.119 4.119 19 C -0.171 4.171 20 C -0.238 4.238 21 C -0.146 4.146 22 C -0.209 4.209 23 C -0.208 4.208 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.247 0.753 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.210 -20.972 1.518 21.142 hybrid contribution 0.330 1.138 -0.110 1.190 sum 2.539 -19.834 1.408 20.045 Atomic orbital electron populations 1.69615 1.06017 1.28502 1.49424 1.25325 0.95665 0.99928 0.96828 0.85813 0.79230 0.80503 0.78489 1.20267 1.20799 1.19317 1.19732 0.93454 0.82031 1.48207 0.87699 1.41804 1.09469 1.04493 1.62731 1.19791 0.88306 0.85053 0.85446 1.90494 1.13757 1.86863 1.57291 1.20906 0.91909 0.85791 1.03068 1.45637 1.11415 1.04635 1.74242 1.18401 0.88622 0.82872 0.77247 1.90774 1.16297 1.84692 1.50068 1.22381 0.99595 0.92388 1.08193 1.20987 0.93217 0.92435 0.92022 1.20778 0.93072 1.04270 0.93748 1.22729 1.02227 0.93774 0.98408 1.23407 1.03205 0.94467 1.02687 1.21194 1.00684 0.90323 1.02367 1.23132 1.00833 0.95109 1.01782 1.23108 1.01302 1.03083 0.93310 0.91603 0.77047 0.89976 0.89976 0.75250 0.85416 0.86473 0.88619 0.89649 0.88685 0.88961 0.86543 0.87431 0.88597 0.88400 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.05 13.05 55.50 0.72 -23.33 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.78 5.29 -10.96 -0.06 -13.83 16 10 C 0.43 9.94 7.85 -10.98 -0.09 9.85 16 11 O -0.60 -15.47 15.24 5.55 0.08 -15.38 16 12 C 0.11 2.08 6.15 -5.19 -0.03 2.05 16 13 N -0.71 -12.02 5.52 -62.67 -0.35 -12.36 16 14 C 0.54 8.62 7.41 -12.67 -0.09 8.52 16 15 O -0.54 -9.57 12.65 5.26 0.07 -9.50 16 16 C -0.20 -2.61 9.61 -37.81 -0.36 -2.97 16 17 C 0.02 0.18 5.36 -101.17 -0.54 -0.37 16 18 C -0.10 -1.19 3.45 -91.77 -0.32 -1.51 16 19 C -0.13 -1.66 7.78 -26.73 -0.21 -1.87 16 20 C -0.20 -1.94 7.89 -26.73 -0.21 -2.15 16 21 C -0.13 -1.13 6.01 -91.77 -0.55 -1.68 16 22 C -0.17 -1.28 9.55 -26.73 -0.26 -1.54 16 23 C -0.17 -1.28 9.67 -26.73 -0.26 -1.54 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 26 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.41 6.91 7.42 -40.82 -0.30 6.61 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.12 1.49 8.12 -51.93 -0.42 1.07 16 31 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 0.83 5.07 -51.93 -0.26 0.57 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.11 0.83 5.62 -51.93 -0.29 0.54 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.77 5.96 -51.93 -0.31 0.46 16 LS Contribution 327.30 15.07 4.93 4.93 Total: -1.00 -30.39 327.30 -8.01 -38.40 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -5.23 Total: 16.58 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -3.16 Total: -1.11 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.32 Total: -49.53 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.15 Total: -24.89 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.39 -8.01 -38.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.528 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds