Wall clock time and date at job start Mon Mar 30 2020 23:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00337 * 2 1 4 4 H 1.48501 * 109.47184 * 269.99939 * 3 2 1 5 5 H 1.48500 * 109.46945 * 29.99625 * 3 2 1 6 6 H 1.48499 * 109.47302 * 149.99754 * 3 2 1 7 7 C 1.38957 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00056 * 180.02562 * 7 2 1 9 9 N 1.37105 * 119.99502 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99322 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00268 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99308 * 180.02562 * 10 9 7 13 13 N 1.46506 * 109.46715 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00125 * 180.02562 * 13 12 10 15 15 O 1.21616 * 119.99779 * 0.02562 * 14 13 12 16 16 C 1.47094 * 120.00183 * 180.02562 * 14 13 12 17 17 C 1.32997 * 119.99880 * 173.88104 * 16 14 13 18 18 C 1.50692 * 120.00275 * 352.36636 * 17 16 14 19 19 C 1.53002 * 117.49763 * 300.62567 * 18 17 16 20 20 C 1.53001 * 59.99970 * 252.50785 * 19 18 17 21 21 C 1.50707 * 119.99911 * 172.36471 * 17 16 14 22 22 C 1.53001 * 117.49836 * 182.32690 * 21 17 16 23 23 C 1.53001 * 60.00078 * 252.51175 * 22 21 17 24 24 H 0.97003 * 119.99880 * 0.02562 * 1 2 3 25 25 H 0.96997 * 120.00132 * 0.02562 * 9 7 2 26 26 H 1.08999 * 109.47207 * 60.00588 * 12 10 9 27 27 H 1.08992 * 109.47457 * 299.99735 * 12 10 9 28 28 H 0.97004 * 119.99841 * 0.02562 * 13 12 10 29 29 H 1.07997 * 119.99939 * 353.87621 * 16 14 13 30 30 H 1.09002 * 115.56617 * 86.31546 * 18 17 16 31 31 H 1.09003 * 117.49692 * 145.02184 * 19 18 17 32 32 H 1.08993 * 117.49886 * 0.02562 * 19 18 17 33 33 H 1.09005 * 117.49455 * 107.49373 * 20 19 18 34 34 H 1.08998 * 117.50019 * 252.48592 * 20 19 18 35 35 H 1.08999 * 115.54750 * 328.03730 * 21 17 16 36 36 H 1.08998 * 117.49758 * 0.02562 * 22 21 17 37 37 H 1.08997 * 117.49363 * 145.02300 * 22 21 17 38 38 H 1.09003 * 117.49800 * 252.51504 * 23 22 21 39 39 H 1.08999 * 117.49677 * 107.49201 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2435 -4.8630 -0.0011 13 7 2.1955 -5.9766 -0.0016 14 6 1.7463 -7.2472 -0.0027 15 8 0.5506 -7.4694 -0.0038 16 6 2.7021 -8.3653 -0.0026 17 6 2.2636 -9.6150 0.1191 18 6 0.8124 -9.8775 0.4287 19 6 0.2497 -9.2925 1.7256 20 6 0.4972 -10.7979 1.6096 21 6 3.2181 -10.7685 -0.0527 22 6 2.6422 -12.1826 0.0454 23 6 3.5124 -11.6309 1.1764 24 1 -0.4850 0.8401 -0.0004 25 1 0.3533 -2.3906 -0.0005 26 1 0.6173 -4.9205 -0.8914 27 1 0.6166 -4.9209 0.8885 28 1 3.1492 -5.7993 -0.0012 29 1 3.7599 -8.1714 -0.1015 30 1 0.1476 -9.9204 -0.4341 31 1 -0.7853 -8.9505 1.7160 32 1 0.9290 -8.7174 2.3546 33 1 1.3396 -11.2135 2.1626 34 1 -0.3748 -11.4462 1.5241 35 1 4.0320 -10.6040 -0.7588 36 1 1.5729 -12.2785 0.2337 37 1 3.0772 -12.9487 -0.5964 38 1 4.5200 -12.0341 1.2786 39 1 3.0157 -11.3640 2.1092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821261.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:00 Heat of formation + Delta-G solvation = -23.420257 kcal Electronic energy + Delta-G solvation = -20823.573854 eV Core-core repulsion = 17539.514023 eV Total energy + Delta-G solvation = -3284.059831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20196 -40.24907 -39.22150 -36.64621 -36.19904 -35.14311 -33.43137 -33.22032 -29.50552 -26.76878 -25.13091 -23.66621 -23.22755 -22.95744 -21.52808 -21.37192 -20.14076 -19.52776 -18.37069 -17.36290 -17.12921 -16.66866 -16.43278 -16.23414 -16.09116 -15.61264 -15.34735 -15.20496 -14.92281 -14.19007 -13.84881 -13.63115 -13.58323 -13.51187 -12.91945 -12.58673 -12.47246 -12.29677 -12.18620 -12.13329 -11.95764 -11.58392 -11.48057 -11.25857 -11.05058 -10.57318 -10.37687 -10.17327 -10.10211 -9.77057 -8.52400 -6.02810 0.32376 1.35507 1.41797 1.54691 1.88889 2.11579 2.30475 2.34223 2.93431 3.03341 3.13195 3.14758 3.59691 3.65453 3.97919 4.09969 4.10558 4.13309 4.19853 4.25818 4.41418 4.43942 4.47990 4.55235 4.66182 4.91747 4.99367 5.05849 5.18747 5.24643 5.28103 5.32308 5.37289 5.37564 5.43800 5.47818 5.90792 6.45974 6.63675 7.02043 7.27669 7.43409 7.93099 8.64656 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043716 B = 0.002915 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.345380 B = 9602.647894 C =10029.122092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.432 3.568 11 O -0.625 6.625 12 C 0.125 3.875 13 N -0.710 5.710 14 C 0.539 3.461 15 O -0.562 6.562 16 C -0.228 4.228 17 C 0.034 3.966 18 C -0.114 4.114 19 C -0.154 4.154 20 C -0.168 4.168 21 C -0.145 4.145 22 C -0.164 4.164 23 C -0.162 4.162 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.411 0.589 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 -22.636 1.654 22.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.219 3.781 11 O -0.513 6.513 12 C -0.003 4.003 13 N -0.363 5.363 14 C 0.329 3.671 15 O -0.442 6.442 16 C -0.248 4.248 17 C 0.032 3.968 18 C -0.132 4.132 19 C -0.191 4.191 20 C -0.204 4.204 21 C -0.163 4.163 22 C -0.201 4.201 23 C -0.199 4.199 24 H 0.090 0.910 25 H 0.233 0.767 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.249 0.751 29 H 0.164 0.836 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.849 -22.585 1.660 22.824 hybrid contribution 0.084 1.514 -0.146 1.523 sum 2.933 -21.071 1.514 21.328 Atomic orbital electron populations 1.69681 1.07040 1.29667 1.49298 1.26147 0.96550 1.02723 0.95739 0.84859 0.77915 0.76405 0.78756 1.19499 1.19569 1.19426 1.19746 0.92960 0.83573 1.50452 0.89611 1.41858 1.09569 1.04641 1.63478 1.20470 0.88136 0.85980 0.83472 1.90467 1.15222 1.87571 1.58006 1.20700 0.91724 0.83982 1.03866 1.45668 1.11065 1.04635 1.74977 1.18927 0.88951 0.82971 0.76204 1.90762 1.17438 1.84902 1.51146 1.22336 0.99828 0.91634 1.11022 1.21291 0.93421 0.92975 0.89141 1.20807 0.93244 1.05592 0.93582 1.22639 1.01281 0.96091 0.99137 1.23464 1.04018 0.92765 1.00200 1.21269 1.00931 0.90030 1.04093 1.23224 1.00868 0.94190 1.01797 1.23193 1.02294 1.01773 0.92610 0.91037 0.76731 0.89112 0.89093 0.75149 0.83552 0.87613 0.89901 0.90957 0.87216 0.87277 0.85436 0.87673 0.86910 0.86684 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 1.00 42.10 29.55 68.60 2.03 44.12 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 8 H 0.09 5.04 7.16 -2.91 -0.02 5.01 16 9 N -0.56 -28.67 5.29 -306.97 -1.62 -30.29 16 10 C 0.43 20.45 7.85 87.66 0.69 21.14 16 11 O -0.62 -33.00 15.24 -3.07 -0.05 -33.05 16 12 C 0.13 4.73 6.15 85.63 0.53 5.26 16 13 N -0.71 -24.35 5.52 -470.45 -2.60 -26.95 16 14 C 0.54 17.26 7.41 86.57 0.64 17.90 16 15 O -0.56 -20.20 12.65 -4.08 -0.05 -20.25 16 16 C -0.23 -5.65 9.61 23.43 0.23 -5.42 16 17 C 0.03 0.73 5.36 -17.62 -0.09 0.63 16 18 C -0.11 -2.60 3.45 -11.54 -0.04 -2.64 16 19 C -0.15 -3.79 7.78 30.60 0.24 -3.56 16 20 C -0.17 -2.91 7.89 30.59 0.24 -2.67 16 21 C -0.15 -2.20 6.01 -11.54 -0.07 -2.27 16 22 C -0.16 -1.92 9.55 30.59 0.29 -1.63 16 23 C -0.16 -1.90 9.67 30.60 0.30 -1.60 16 24 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 26 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 28 H 0.41 14.00 7.42 -92.71 -0.69 13.31 16 29 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 30 H 0.11 2.67 8.12 -2.39 -0.02 2.66 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.11 1.60 5.07 -2.38 -0.01 1.59 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.29 5.62 -2.39 -0.01 1.28 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 39 H 0.10 1.20 5.96 -2.39 -0.01 1.19 16 Total: -1.00 -65.45 327.30 1.89 -63.56 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.33 Total: 44.83 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.23 Total: 6.96 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.94 Total: -106.17 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -0.10 Total: -53.30 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -65.45 1.89 -63.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821261.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.144 kcal (2) G-P(sol) polarization free energy of solvation -65.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds