Wall clock time and date at job start Tue Mar 31 2020 00:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47034 * 299.99627 * 3 2 1 6 6 H 1.48501 * 109.46932 * 59.99905 * 3 2 1 7 7 C 1.37876 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47477 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47533 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47213 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99839 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99864 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99873 * 180.02562 * 13 12 11 16 16 O 1.42895 * 109.47012 * 180.02562 * 15 13 12 17 17 C 1.42900 * 113.99877 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46665 * 179.97438 * 17 16 15 19 19 C 1.38223 * 119.62264 * 0.02656 * 18 17 16 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 180.02562 * 18 17 16 24 24 H 0.97003 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47545 * 59.99117 * 9 7 2 26 26 H 1.09006 * 109.46835 * 299.99674 * 9 7 2 27 27 H 1.08998 * 109.47064 * 59.99760 * 10 9 7 28 28 H 1.09006 * 109.46984 * 299.99780 * 10 9 7 29 29 H 1.09002 * 109.46841 * 59.99437 * 11 10 9 30 30 H 1.08998 * 109.47142 * 300.00286 * 11 10 9 31 31 H 0.96997 * 120.00001 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.46796 * 60.00010 * 15 13 12 33 33 H 1.09002 * 109.46864 * 300.00185 * 15 13 12 34 34 H 1.09000 * 109.46932 * 60.00268 * 17 16 15 35 35 H 1.08993 * 109.47528 * 300.00136 * 17 16 15 36 36 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 37 37 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 38 38 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0015 14 8 0.7906 -7.5929 0.0024 15 6 2.9623 -8.5168 0.0014 16 8 2.2478 -9.7543 0.0019 17 6 3.0878 -10.9104 0.0013 18 6 2.2335 -12.1519 0.0026 19 6 0.8563 -12.0336 0.0034 20 6 0.0797 -13.1819 0.0040 21 6 0.7201 -14.4119 0.0031 22 6 2.1014 -14.4517 0.0023 23 7 2.8085 -13.3384 0.0028 24 1 -0.4851 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8913 31 1 3.3859 -5.9233 0.0002 32 1 3.5895 -8.4585 0.8910 33 1 3.5884 -8.4594 -0.8890 34 1 3.7176 -10.9023 0.8909 35 1 3.7164 -10.9023 -0.8890 36 1 0.3912 -11.0589 0.0040 37 1 -0.9986 -13.1201 0.0043 38 1 0.1467 -15.3270 0.0040 39 1 2.6077 -15.4057 -0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805178431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:34 Heat of formation + Delta-G solvation = -59.670686 kcal Electronic energy + Delta-G solvation = -19775.791010 eV Core-core repulsion = 16490.159243 eV Total energy + Delta-G solvation = -3285.631768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52190 -39.63541 -37.76227 -35.39653 -33.35524 -32.94901 -32.23884 -31.33379 -28.82065 -26.97078 -25.91573 -23.75851 -22.96701 -22.31829 -20.81132 -20.09080 -17.68824 -17.25992 -16.74163 -16.68888 -16.41694 -15.81861 -15.62083 -15.27149 -15.09282 -14.47583 -14.41255 -14.27211 -13.66372 -13.46209 -13.20817 -12.55410 -12.31636 -12.15010 -11.88996 -11.83612 -11.69636 -10.93888 -10.76530 -10.59209 -10.30649 -10.06497 -9.89981 -9.88347 -9.77708 -9.39562 -9.21675 -9.12628 -8.84036 -8.39531 -6.03818 -4.07034 0.78713 0.99222 2.62537 2.68705 3.28623 3.36202 3.39474 3.46695 3.61220 4.29338 4.42674 4.47121 4.57538 4.68886 4.79516 4.88864 4.92105 4.96759 5.01178 5.09581 5.30702 5.32080 5.55755 5.66957 5.74357 5.79407 5.95872 6.12616 6.39233 6.41736 6.56364 6.64952 6.81574 6.96926 7.61442 7.62345 7.63429 7.73483 7.94823 8.31624 8.36573 8.99888 9.57361 11.07462 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.065198 B = 0.002069 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.359054 B =13527.488286 C =13920.494208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.118 3.882 12 N -0.724 5.724 13 C 0.508 3.492 14 O -0.524 6.524 15 C 0.046 3.954 16 O -0.361 6.361 17 C 0.113 3.887 18 C 0.123 3.877 19 C -0.143 4.143 20 C -0.077 4.077 21 C -0.176 4.176 22 C 0.098 3.902 23 N -0.484 5.484 24 H 0.261 0.739 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.399 0.601 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -26.949 -0.003 27.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.159 4.159 11 C -0.004 4.004 12 N -0.377 5.377 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.034 4.034 16 O -0.279 6.279 17 C 0.036 3.964 18 C -0.014 4.014 19 C -0.163 4.163 20 C -0.103 4.103 21 C -0.196 4.196 22 C -0.059 4.059 23 N -0.195 5.195 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.233 0.767 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.262 -27.036 -0.002 27.752 hybrid contribution 0.214 1.063 0.000 1.084 sum 6.476 -25.973 -0.002 26.768 Atomic orbital electron populations 1.69973 1.06063 1.26608 1.50580 1.25039 0.94866 0.99346 0.95276 0.86521 0.80026 0.83735 0.77609 1.19764 1.20996 1.20999 1.21237 0.93031 0.90915 1.50883 0.92570 1.19043 0.93871 0.90861 0.97714 1.21895 0.99789 0.93253 1.00933 1.21669 0.91789 0.84828 1.02147 1.46092 1.10976 1.05486 1.75169 1.20137 0.89504 0.83776 0.77347 1.90729 1.16586 1.84532 1.48113 1.22246 0.94127 0.84098 1.02888 1.87918 1.32150 1.12185 1.95616 1.20941 0.91133 0.82170 1.02185 1.20758 0.91985 0.92303 0.96364 1.22109 0.94487 1.00734 0.98950 1.21698 1.00912 0.92249 0.95412 1.22171 0.96260 0.98922 1.02246 1.22646 0.91246 0.96251 0.95798 1.67198 1.41528 0.97996 1.12777 0.92958 0.96239 0.96229 0.92664 0.92657 0.91650 0.91643 0.76729 0.89964 0.89970 0.90655 0.90645 0.83131 0.84597 0.84760 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.75 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 2.02 5.67 -4.04 -0.02 1.99 16 12 N -0.72 -9.69 5.56 -60.29 -0.33 -10.02 16 13 C 0.51 7.23 7.91 -10.98 -0.09 7.14 16 14 O -0.52 -9.97 16.50 -14.35 -0.24 -10.20 16 15 C 0.05 0.45 6.42 36.01 0.23 0.68 16 16 O -0.36 -4.22 8.33 -55.14 -0.46 -4.68 16 17 C 0.11 1.05 6.48 36.01 0.23 1.28 16 18 C 0.12 1.33 6.78 -82.59 -0.56 0.77 16 19 C -0.14 -1.53 9.41 -39.44 -0.37 -1.90 16 20 C -0.08 -0.66 10.18 -39.28 -0.40 -1.06 16 21 C -0.18 -1.29 10.11 -39.44 -0.40 -1.69 16 22 C 0.10 0.81 11.18 -17.55 -0.20 0.61 16 23 N -0.48 -5.13 10.27 -9.47 -0.10 -5.22 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.40 3.99 8.47 -40.82 -0.35 3.65 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.15 1.78 7.00 -52.49 -0.37 1.41 16 37 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 340.87 15.07 5.14 5.14 Total: -1.00 -34.64 340.87 -8.29 -42.93 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.75 Total: -0.89 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.26 Total: -7.43 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.30 Total: -41.17 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.70 Total: -14.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.64 -8.29 -42.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805178431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.739 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds