Wall clock time and date at job start Tue Mar 31 2020 00:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47175 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47034 * 299.99627 * 3 2 1 6 6 H 1.48501 * 109.46932 * 59.99905 * 3 2 1 7 7 C 1.37876 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00022 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47477 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47533 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47213 * 179.97438 * 11 10 9 13 13 C 1.34783 * 119.99839 * 179.97438 * 12 11 10 14 14 O 1.21278 * 119.99864 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99873 * 180.02562 * 13 12 11 16 16 O 1.42895 * 109.47012 * 180.02562 * 15 13 12 17 17 C 1.42900 * 113.99877 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.46665 * 179.97438 * 17 16 15 19 19 C 1.38223 * 119.62264 * 0.02656 * 18 17 16 20 20 C 1.38628 * 119.16031 * 179.97438 * 19 18 17 21 21 C 1.38672 * 118.42475 * 359.97438 * 20 19 18 22 22 C 1.38186 * 119.15778 * 0.02562 * 21 20 19 23 23 N 1.31856 * 119.61279 * 180.02562 * 18 17 16 24 24 H 0.97003 * 120.00283 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47545 * 59.99117 * 9 7 2 26 26 H 1.09006 * 109.46835 * 299.99674 * 9 7 2 27 27 H 1.08998 * 109.47064 * 59.99760 * 10 9 7 28 28 H 1.09006 * 109.46984 * 299.99780 * 10 9 7 29 29 H 1.09002 * 109.46841 * 59.99437 * 11 10 9 30 30 H 1.08998 * 109.47142 * 300.00286 * 11 10 9 31 31 H 0.96997 * 120.00001 * 0.02562 * 12 11 10 32 32 H 1.09002 * 109.46796 * 60.00010 * 15 13 12 33 33 H 1.09002 * 109.46864 * 300.00185 * 15 13 12 34 34 H 1.09000 * 109.46932 * 60.00268 * 17 16 15 35 35 H 1.08993 * 109.47528 * 300.00136 * 17 16 15 36 36 H 1.07995 * 120.41821 * 359.95030 * 19 18 17 37 37 H 1.08006 * 120.78822 * 180.02562 * 20 19 18 38 38 H 1.07993 * 120.42192 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.60956 * 180.27218 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 7 2.4322 -6.1006 0.0006 13 6 1.9830 -7.3713 0.0015 14 8 0.7906 -7.5929 0.0024 15 6 2.9623 -8.5168 0.0014 16 8 2.2478 -9.7543 0.0019 17 6 3.0878 -10.9104 0.0013 18 6 2.2335 -12.1519 0.0026 19 6 0.8563 -12.0336 0.0034 20 6 0.0797 -13.1819 0.0040 21 6 0.7201 -14.4119 0.0031 22 6 2.1014 -14.4517 0.0023 23 7 2.8085 -13.3384 0.0028 24 1 -0.4851 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 0.8532 -5.0451 -0.8886 30 1 0.8539 -5.0446 0.8913 31 1 3.3859 -5.9233 0.0002 32 1 3.5895 -8.4585 0.8910 33 1 3.5884 -8.4594 -0.8890 34 1 3.7176 -10.9023 0.8909 35 1 3.7164 -10.9023 -0.8890 36 1 0.3912 -11.0589 0.0040 37 1 -0.9986 -13.1201 0.0043 38 1 0.1467 -15.3270 0.0040 39 1 2.6077 -15.4057 -0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805178431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:34 Heat of formation + Delta-G solvation = -83.401646 kcal Electronic energy + Delta-G solvation = -19776.820062 eV Core-core repulsion = 16490.159243 eV Total energy + Delta-G solvation = -3286.660819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20827 -40.74096 -38.62062 -36.90942 -35.19776 -33.61040 -33.19151 -32.81107 -29.93408 -28.23029 -27.05284 -24.81303 -24.33293 -22.97843 -22.31897 -21.45296 -18.65009 -18.47560 -17.96362 -17.55922 -17.49033 -16.83098 -16.49524 -16.49186 -16.33169 -15.98738 -15.51297 -15.23298 -14.69522 -14.42018 -14.17586 -13.96372 -13.75374 -13.62029 -13.13783 -12.89035 -12.76860 -12.54588 -12.51645 -12.34227 -11.67172 -11.58414 -11.22050 -11.00050 -10.81876 -10.76787 -10.56221 -10.45847 -10.11707 -9.86928 -8.19556 -6.31031 0.13304 0.32084 1.42183 1.42245 1.55466 1.58272 1.72397 2.41845 2.74028 2.80770 3.14382 3.59047 3.76872 3.86942 4.01948 4.15936 4.18905 4.20150 4.23591 4.30450 4.33220 4.39140 4.46745 4.55687 4.69904 4.89666 4.94858 4.99259 5.15074 5.18009 5.30691 5.41816 5.53139 5.71096 5.75110 5.84634 5.98175 6.22272 6.59031 6.87146 6.95227 7.25205 7.38759 8.92755 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.065198 B = 0.002069 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.359054 B =13527.488286 C =13920.494208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.021 3.979 10 C -0.101 4.101 11 C 0.131 3.869 12 N -0.710 5.710 13 C 0.503 3.497 14 O -0.581 6.581 15 C 0.052 3.948 16 O -0.391 6.391 17 C 0.115 3.885 18 C 0.104 3.896 19 C -0.168 4.168 20 C -0.083 4.083 21 C -0.170 4.170 22 C 0.091 3.909 23 N -0.504 5.504 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.420 0.580 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 -28.191 -0.005 29.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.017 4.017 10 C -0.139 4.139 11 C 0.007 3.993 12 N -0.364 5.364 13 C 0.291 3.709 14 O -0.460 6.460 15 C -0.026 4.026 16 O -0.309 6.309 17 C 0.038 3.962 18 C -0.033 4.033 19 C -0.188 4.188 20 C -0.109 4.109 21 C -0.190 4.190 22 C -0.066 4.066 23 N -0.215 5.215 24 H 0.071 0.929 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.257 0.743 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.170 0.830 38 H 0.185 0.815 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 8.955 -28.285 -0.004 29.669 hybrid contribution -0.657 1.356 0.001 1.507 sum 8.298 -26.929 -0.003 28.179 Atomic orbital electron populations 1.70121 1.07978 1.27714 1.51807 1.26049 0.95760 1.03649 0.94854 0.85350 0.79243 0.78581 0.77555 1.18068 1.20658 1.20668 1.21723 0.93821 0.91946 1.50227 0.91355 1.18970 0.94538 0.93128 0.95034 1.21595 0.98388 0.91528 1.02369 1.21222 0.91996 0.85535 1.00594 1.45814 1.11441 1.04512 1.74628 1.21036 0.89601 0.84731 0.75582 1.90709 1.19352 1.85334 1.50646 1.22330 0.92590 0.81584 1.06142 1.87893 1.33805 1.13269 1.95954 1.21045 0.90723 0.80884 1.03534 1.21015 0.92225 0.93137 0.96873 1.22062 0.95096 1.00616 1.01014 1.21996 1.01847 0.92263 0.94817 1.22526 0.96254 0.99547 1.00646 1.23267 0.91989 0.96780 0.94563 1.67252 1.42141 0.98396 1.13721 0.92850 0.99038 0.99029 0.91098 0.91089 0.93388 0.93379 0.74276 0.86491 0.86498 0.89157 0.89142 0.85298 0.82957 0.81478 0.79622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 2 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.59 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.08 4.97 29.85 0.15 1.23 16 10 C -0.10 -3.77 5.27 30.59 0.16 -3.60 16 11 C 0.13 4.51 5.67 86.38 0.49 5.00 16 12 N -0.71 -18.05 5.56 -463.06 -2.57 -20.63 16 13 C 0.50 13.99 7.91 87.66 0.69 14.69 16 14 O -0.58 -22.85 16.50 16.01 0.26 -22.59 16 15 C 0.05 0.90 6.42 71.24 0.46 1.35 16 16 O -0.39 -8.88 8.33 -129.94 -1.08 -9.96 16 17 C 0.11 1.99 6.48 71.24 0.46 2.45 16 18 C 0.10 2.21 6.78 42.55 0.29 2.50 16 19 C -0.17 -3.70 9.41 22.36 0.21 -3.49 16 20 C -0.08 -1.38 10.18 22.47 0.23 -1.15 16 21 C -0.17 -2.16 10.11 22.36 0.23 -1.93 16 22 C 0.09 1.32 11.18 84.67 0.95 2.27 16 23 N -0.50 -10.08 10.27 -183.88 -1.89 -11.97 16 24 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 25 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.42 7.19 8.47 -92.71 -0.79 6.40 16 32 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.13 3.33 7.00 -2.91 -0.02 3.31 16 37 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 38 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 39 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -78.44 340.87 2.30 -76.15 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.26 Total: 10.41 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 5.01 Total: -10.12 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -4.18 Total: -89.48 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.82 Total: -32.55 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -78.44 2.30 -76.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805178431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.255 kcal (2) G-P(sol) polarization free energy of solvation -78.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds