Wall clock time and date at job start Tue Mar 31 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00089 * 2 1 4 4 H 1.48493 * 109.47288 * 270.00251 * 3 2 1 5 5 H 1.48496 * 109.46976 * 30.00418 * 3 2 1 6 6 H 1.48503 * 109.47015 * 150.00040 * 3 2 1 7 7 C 1.37876 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00112 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46615 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46615 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46899 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99824 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00342 * 179.97438 * 13 12 11 16 16 C 1.39540 * 120.00403 * 185.26532 * 15 13 12 17 17 C 1.39421 * 120.86024 * 212.42488 * 16 15 13 18 18 C 1.37927 * 119.07536 * 179.97438 * 17 16 15 19 19 N 1.31982 * 120.83561 * 359.97438 * 18 17 16 20 20 C 1.31953 * 121.90034 * 0.02695 * 19 18 17 21 21 C 1.50696 * 119.58032 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.47005 * 180.02562 * 21 20 19 23 23 C 1.37969 * 120.83283 * 0.26823 * 20 19 18 24 24 H 0.97004 * 119.99823 * 359.97438 * 1 2 3 25 25 H 1.08988 * 109.47416 * 59.99726 * 9 7 2 26 26 H 1.09001 * 109.46724 * 299.99121 * 9 7 2 27 27 H 1.09000 * 109.46847 * 60.00127 * 10 9 7 28 28 H 1.08990 * 109.47151 * 299.99734 * 10 9 7 29 29 H 1.09000 * 109.47000 * 60.00722 * 11 10 9 30 30 H 1.09001 * 109.47268 * 299.99578 * 11 10 9 31 31 H 1.09000 * 109.46847 * 60.00628 * 12 11 10 32 32 H 1.08998 * 109.46843 * 300.00290 * 12 11 10 33 33 H 0.97004 * 119.99260 * 5.26337 * 15 13 12 34 34 H 1.07997 * 120.45911 * 0.02562 * 17 16 15 35 35 H 1.07995 * 119.58081 * 180.02562 * 18 17 16 36 36 H 1.09008 * 109.47017 * 299.99327 * 21 20 19 37 37 H 1.08998 * 109.47573 * 59.99765 * 21 20 19 38 38 H 0.96695 * 113.99804 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.45912 * 179.72409 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5516 -2.6366 -0.0001 12 6 6.0615 -4.0792 0.0004 13 6 7.5685 -4.0792 -0.0003 14 8 8.1749 -3.0288 -0.0006 15 7 8.2424 -5.2463 0.0005 16 6 9.6334 -5.2488 0.1108 17 6 10.3989 -6.2304 -0.5172 18 6 11.7713 -6.1974 -0.3841 19 7 12.3596 -5.2528 0.3256 20 6 11.6703 -4.3067 0.9346 21 6 12.3960 -3.2538 1.7319 22 8 11.4477 -2.3449 2.2949 23 6 10.2933 -4.2729 0.8556 24 1 -0.4850 0.8401 0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8752 -0.6797 -0.8896 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1506 0.8896 29 1 5.9149 -2.1229 0.8900 30 1 5.9149 -2.1227 -0.8901 31 1 5.6982 -4.5932 -0.8895 32 1 5.6981 -4.5926 0.8906 33 1 7.7604 -6.0846 -0.0755 34 1 9.9238 -7.0054 -1.1003 35 1 12.3722 -6.9535 -0.8674 36 1 12.9618 -3.7301 2.5327 37 1 13.0782 -2.7094 1.0790 38 1 11.8451 -1.6390 2.8229 39 1 9.7348 -3.4983 1.3602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807169651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:33 Heat of formation + Delta-G solvation = -67.031488 kcal Electronic energy + Delta-G solvation = -20418.633079 eV Core-core repulsion = 17132.682123 eV Total energy + Delta-G solvation = -3285.950956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09793 -39.55175 -37.10306 -35.65334 -35.00276 -32.67253 -31.97326 -31.32934 -29.89870 -26.98811 -26.18571 -24.00329 -22.60319 -21.62003 -20.49724 -20.07046 -18.04676 -17.85772 -17.07076 -16.57254 -16.23995 -15.93705 -15.50393 -15.43895 -15.00506 -14.38597 -14.25464 -14.06966 -13.91640 -13.61754 -12.68516 -12.55711 -12.38947 -12.17742 -11.96565 -11.78572 -11.21157 -11.13303 -10.78913 -10.59121 -10.57568 -10.33088 -9.88277 -9.71642 -9.66114 -9.45258 -9.16779 -9.13722 -8.86086 -8.50421 -6.01620 -3.99285 0.80544 0.98393 2.45340 2.71320 3.34729 3.41838 3.47685 3.48536 3.52998 4.34048 4.49194 4.50293 4.64382 4.79506 4.90929 4.99200 5.10133 5.10785 5.12672 5.18079 5.33214 5.50442 5.64794 5.69161 5.89082 5.96227 6.04399 6.08212 6.35425 6.54499 6.63164 6.77008 6.95420 7.05311 7.30815 7.35763 7.48629 7.71685 7.83248 7.90167 8.56858 9.03169 9.61705 11.11851 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.002897 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.921625 B = 9664.043156 C =10487.518535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.108 4.108 12 C -0.137 4.137 13 C 0.511 3.489 14 O -0.505 6.505 15 N -0.679 5.679 16 C 0.195 3.805 17 C -0.208 4.208 18 C 0.120 3.880 19 N -0.499 5.499 20 C 0.135 3.865 21 C 0.131 3.869 22 O -0.565 6.565 23 C -0.153 4.153 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.011 0.989 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.414 0.586 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.388 0.612 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.994 -13.991 1.822 28.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.146 4.146 12 C -0.176 4.176 13 C 0.300 3.700 14 O -0.377 6.377 15 N -0.325 5.325 16 C 0.091 3.909 17 C -0.231 4.231 18 C -0.038 4.038 19 N -0.212 5.212 20 C -0.002 4.002 21 C 0.052 3.948 22 O -0.371 6.371 23 C -0.175 4.175 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.251 0.749 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.236 0.764 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 25.654 -13.434 1.611 29.003 hybrid contribution -0.470 0.664 0.016 0.814 sum 25.184 -12.769 1.627 28.283 Atomic orbital electron populations 1.69922 1.06314 1.26848 1.51423 1.25043 0.94734 0.99236 0.94587 0.86772 0.80436 0.83540 0.78547 1.20316 1.21443 1.18884 1.21176 0.89640 0.94391 1.50594 0.91105 1.19575 0.96939 0.92410 0.96356 1.21477 0.91439 1.00062 1.01019 1.21523 0.97465 0.92462 1.03125 1.21819 0.88783 1.02331 1.04707 1.21438 0.91362 0.82689 0.74553 1.90763 1.70258 1.30946 1.45723 1.43723 1.04453 1.10743 1.73545 1.18097 0.83884 0.95474 0.93449 1.21920 0.95490 1.02139 1.03548 1.22431 0.91483 0.95384 0.94458 1.67218 1.41110 1.03277 1.09591 1.20736 0.90591 0.93735 0.95091 1.20532 0.89511 0.89051 0.95693 1.86484 1.35831 1.43340 1.71395 1.21975 0.95422 1.00735 0.99384 0.92798 0.96580 0.97042 0.92796 0.92736 0.91574 0.91641 0.88512 0.88361 0.74918 0.84425 0.82201 0.91282 0.91212 0.76424 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -1.96 5.15 -26.73 -0.14 -2.10 16 11 C -0.11 -1.74 4.50 -26.73 -0.12 -1.86 16 12 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 13 C 0.51 6.60 7.60 -10.99 -0.08 6.51 16 14 O -0.50 -8.63 13.68 5.55 0.08 -8.56 16 15 N -0.68 -6.67 5.35 -9.71 -0.05 -6.72 16 16 C 0.19 2.20 6.33 -83.49 -0.53 1.67 16 17 C -0.21 -1.83 10.06 -39.25 -0.39 -2.22 16 18 C 0.12 1.08 11.17 -17.60 -0.20 0.89 16 19 N -0.50 -5.66 10.27 -9.56 -0.10 -5.76 16 20 C 0.14 1.62 6.78 -82.64 -0.56 1.06 16 21 C 0.13 1.21 7.59 36.00 0.27 1.48 16 22 O -0.56 -5.61 12.11 -35.23 -0.43 -6.03 16 23 C -0.15 -2.03 8.03 -39.26 -0.32 -2.35 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.02 0.39 7.20 -51.94 -0.37 0.02 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 30 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.41 2.49 8.82 -40.82 -0.36 2.13 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.39 1.83 9.12 45.56 0.42 2.24 16 39 H 0.16 2.44 5.42 -52.48 -0.28 2.16 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -36.95 331.27 -6.97 -43.92 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.81 Total: 0.78 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.77 Total: -12.71 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.62 Total: -40.03 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.35 Total: -14.59 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -36.95 -6.97 -43.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807169651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.108 kcal (2) G-P(sol) polarization free energy of solvation -36.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds