Wall clock time and date at job start Tue Mar 31 2020 00:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00089 * 2 1 4 4 H 1.48493 * 109.47288 * 270.00251 * 3 2 1 5 5 H 1.48496 * 109.46976 * 30.00418 * 3 2 1 6 6 H 1.48503 * 109.47015 * 150.00040 * 3 2 1 7 7 C 1.37876 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00032 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00112 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46885 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46615 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46615 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46899 * 179.97438 * 12 11 10 14 14 O 1.21283 * 119.99824 * 0.02562 * 13 12 11 15 15 N 1.34772 * 120.00342 * 179.97438 * 13 12 11 16 16 C 1.39540 * 120.00403 * 185.26532 * 15 13 12 17 17 C 1.39421 * 120.86024 * 212.42488 * 16 15 13 18 18 C 1.37927 * 119.07536 * 179.97438 * 17 16 15 19 19 N 1.31982 * 120.83561 * 359.97438 * 18 17 16 20 20 C 1.31953 * 121.90034 * 0.02695 * 19 18 17 21 21 C 1.50696 * 119.58032 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.47005 * 180.02562 * 21 20 19 23 23 C 1.37969 * 120.83283 * 0.26823 * 20 19 18 24 24 H 0.97004 * 119.99823 * 359.97438 * 1 2 3 25 25 H 1.08988 * 109.47416 * 59.99726 * 9 7 2 26 26 H 1.09001 * 109.46724 * 299.99121 * 9 7 2 27 27 H 1.09000 * 109.46847 * 60.00127 * 10 9 7 28 28 H 1.08990 * 109.47151 * 299.99734 * 10 9 7 29 29 H 1.09000 * 109.47000 * 60.00722 * 11 10 9 30 30 H 1.09001 * 109.47268 * 299.99578 * 11 10 9 31 31 H 1.09000 * 109.46847 * 60.00628 * 12 11 10 32 32 H 1.08998 * 109.46843 * 300.00290 * 12 11 10 33 33 H 0.97004 * 119.99260 * 5.26337 * 15 13 12 34 34 H 1.07997 * 120.45911 * 0.02562 * 17 16 15 35 35 H 1.07995 * 119.58081 * 180.02562 * 18 17 16 36 36 H 1.09008 * 109.47017 * 299.99327 * 21 20 19 37 37 H 1.08998 * 109.47573 * 59.99765 * 21 20 19 38 38 H 0.96695 * 113.99804 * 179.97438 * 22 21 20 39 39 H 1.08004 * 120.45912 * 179.72409 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5516 -2.6366 -0.0001 12 6 6.0615 -4.0792 0.0004 13 6 7.5685 -4.0792 -0.0003 14 8 8.1749 -3.0288 -0.0006 15 7 8.2424 -5.2463 0.0005 16 6 9.6334 -5.2488 0.1108 17 6 10.3989 -6.2304 -0.5172 18 6 11.7713 -6.1974 -0.3841 19 7 12.3596 -5.2528 0.3256 20 6 11.6703 -4.3067 0.9346 21 6 12.3960 -3.2538 1.7319 22 8 11.4477 -2.3449 2.2949 23 6 10.2933 -4.2729 0.8556 24 1 -0.4850 0.8401 0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8752 -0.6797 -0.8896 27 1 3.6585 -3.1502 -0.8903 28 1 3.6579 -3.1506 0.8896 29 1 5.9149 -2.1229 0.8900 30 1 5.9149 -2.1227 -0.8901 31 1 5.6982 -4.5932 -0.8895 32 1 5.6981 -4.5926 0.8906 33 1 7.7604 -6.0846 -0.0755 34 1 9.9238 -7.0054 -1.1003 35 1 12.3722 -6.9535 -0.8674 36 1 12.9618 -3.7301 2.5327 37 1 13.0782 -2.7094 1.0790 38 1 11.8451 -1.6390 2.8229 39 1 9.7348 -3.4983 1.3602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807169651.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:33 Heat of formation + Delta-G solvation = -95.832834 kcal Electronic energy + Delta-G solvation = -20419.881999 eV Core-core repulsion = 17132.682123 eV Total energy + Delta-G solvation = -3287.199876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94521 -40.45551 -37.82694 -36.85413 -36.27652 -34.63874 -32.73537 -32.49767 -31.30535 -27.84874 -27.64679 -25.07159 -23.78826 -22.69441 -21.75805 -21.45272 -18.90198 -18.83767 -18.59607 -17.91575 -17.19700 -16.72265 -16.47156 -16.33255 -16.17476 -15.80046 -15.54844 -15.13944 -14.81855 -14.65239 -14.46144 -13.92804 -13.71673 -13.54986 -13.13592 -12.88904 -12.71434 -12.36620 -12.11513 -12.03707 -11.76508 -11.56306 -11.35888 -11.28864 -11.27210 -11.13333 -10.76418 -10.45751 -9.91966 -9.70035 -8.30161 -6.33102 0.03217 0.17174 1.34316 1.35908 1.48582 1.51755 1.88510 2.35405 2.76493 2.85862 3.05417 3.52229 3.80868 3.85346 3.97701 4.09662 4.12802 4.20797 4.35094 4.39825 4.47211 4.57809 4.62739 4.74295 4.78575 4.83918 4.91417 5.07558 5.12129 5.19302 5.24258 5.30906 5.59788 5.65212 5.68297 5.74811 6.28103 6.30038 6.75096 6.84972 6.95334 7.02602 7.31876 8.86420 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.002897 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.921625 B = 9664.043156 C =10487.518535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.018 4.018 10 C -0.093 4.093 11 C -0.100 4.100 12 C -0.127 4.127 13 C 0.512 3.488 14 O -0.554 6.554 15 N -0.660 5.660 16 C 0.178 3.822 17 C -0.196 4.196 18 C 0.117 3.883 19 N -0.514 5.514 20 C 0.118 3.882 21 C 0.130 3.870 22 O -0.589 6.589 23 C -0.182 4.182 24 H 0.266 0.734 25 H 0.013 0.987 26 H 0.012 0.988 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.434 0.566 34 H 0.176 0.824 35 H 0.198 0.802 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.406 0.594 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.879 -15.513 1.194 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.138 4.138 12 C -0.166 4.166 13 C 0.301 3.699 14 O -0.431 6.431 15 N -0.307 5.307 16 C 0.074 3.926 17 C -0.218 4.218 18 C -0.040 4.040 19 N -0.226 5.226 20 C -0.018 4.018 21 C 0.052 3.948 22 O -0.398 6.398 23 C -0.204 4.204 24 H 0.075 0.925 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.275 0.725 34 H 0.193 0.807 35 H 0.214 0.786 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.257 0.743 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 27.551 -15.005 0.993 31.388 hybrid contribution -1.073 1.032 0.202 1.502 sum 26.479 -13.973 1.195 29.963 Atomic orbital electron populations 1.70060 1.08113 1.28073 1.52920 1.25985 0.95601 1.03366 0.94323 0.85706 0.79385 0.78706 0.79160 1.19244 1.20757 1.17648 1.21550 0.92117 0.93228 1.49898 0.94355 1.19580 0.93892 0.95979 0.96059 1.21333 0.93485 0.96718 1.01557 1.21310 0.95027 0.95550 1.01893 1.21719 0.87916 0.99573 1.07377 1.21588 0.91762 0.82738 0.73766 1.90758 1.71165 1.32874 1.48254 1.43472 1.04148 1.10806 1.72306 1.18328 0.84450 0.95932 0.93879 1.22281 0.95280 1.01727 1.02481 1.23161 0.92250 0.95205 0.93382 1.67313 1.41390 1.03752 1.10193 1.21105 0.90497 0.94622 0.95594 1.20636 0.89198 0.88778 0.96212 1.86454 1.37089 1.44295 1.71955 1.21881 0.96149 1.01309 1.01109 0.92517 0.96882 0.96939 0.92166 0.92291 0.93032 0.92846 0.85578 0.85841 0.72532 0.80694 0.78556 0.89511 0.90290 0.74287 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.50 13.96 21.45 0.30 -60.20 16 2 C 0.00 0.23 5.47 84.65 0.46 0.70 16 3 Si 0.95 45.98 27.47 68.60 1.88 47.86 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 7 C -0.53 -31.07 9.66 25.60 0.25 -30.82 16 8 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.48 5.15 30.60 0.16 -3.32 16 11 C -0.10 -3.11 4.50 30.60 0.14 -2.98 16 12 C -0.13 -2.65 5.70 29.85 0.17 -2.48 16 13 C 0.51 12.56 7.60 87.66 0.67 13.23 16 14 O -0.55 -19.20 13.68 -3.04 -0.04 -19.24 16 15 N -0.66 -11.57 5.35 -303.01 -1.62 -13.19 16 16 C 0.18 3.75 6.33 38.47 0.24 3.99 16 17 C -0.20 -2.81 10.06 22.48 0.23 -2.59 16 18 C 0.12 1.78 11.17 84.60 0.95 2.73 16 19 N -0.51 -10.88 10.27 -184.16 -1.89 -12.77 16 20 C 0.12 2.81 6.78 42.48 0.29 3.10 16 21 C 0.13 2.40 7.59 71.23 0.54 2.94 16 22 O -0.59 -12.11 12.11 -148.98 -1.80 -13.92 16 23 C -0.18 -4.88 8.03 22.48 0.18 -4.70 16 24 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 25 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 26 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 27 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 30 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 31 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.43 3.74 8.82 -92.71 -0.82 2.92 16 34 H 0.18 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.41 3.97 9.12 -74.06 -0.68 3.29 16 39 H 0.13 4.21 5.42 -2.91 -0.02 4.20 16 Total: -1.00 -83.00 331.27 0.74 -82.26 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -0.48 Total: 10.15 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 4.39 Total: -20.94 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -3.21 Total: -86.17 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.85 Total: -33.16 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.86 kcal Total: -83.00 0.74 -82.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807169651.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.571 kcal (2) G-P(sol) polarization free energy of solvation -82.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds