Wall clock time and date at job start Tue Mar 31 2020 00:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48499 * 109.47124 * 270.00568 * 3 2 1 5 5 H 1.48508 * 109.46788 * 29.99740 * 3 2 1 6 6 H 1.48496 * 109.47350 * 149.99944 * 3 2 1 7 7 C 1.37876 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00426 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99893 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99911 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00307 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99887 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.47374 * 180.02562 * 13 11 10 15 15 C 1.44667 * 111.00393 * 167.61041 * 14 13 11 16 16 C 1.50958 * 116.83601 * 199.56415 * 15 14 13 17 17 C 1.53771 * 110.78639 * 287.46857 * 16 15 14 18 18 C 1.51945 * 106.81252 * 78.78594 * 17 16 15 19 19 O 1.33789 * 127.44874 * 116.10719 * 18 17 16 20 20 C 1.34654 * 109.19076 * 180.26755 * 19 18 17 21 21 C 1.34891 * 108.46751 * 359.85941 * 20 19 18 22 22 C 1.34182 * 124.08858 * 296.05653 * 18 17 16 23 23 C 1.47552 * 110.99789 * 293.95582 * 14 13 11 24 24 H 0.97003 * 119.99570 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47482 * 59.99226 * 9 7 2 26 26 H 1.09003 * 109.46837 * 299.99269 * 9 7 2 27 27 H 0.97005 * 119.99752 * 359.97438 * 10 9 7 28 28 H 1.08996 * 109.47269 * 60.00087 * 13 11 10 29 29 H 1.09003 * 109.47025 * 300.00144 * 13 11 10 30 30 H 1.09002 * 107.97890 * 321.42162 * 15 14 13 31 31 H 1.09003 * 107.97439 * 77.70825 * 15 14 13 32 32 H 1.09006 * 109.21362 * 47.79997 * 16 15 14 33 33 H 1.09003 * 109.21707 * 167.12807 * 16 15 14 34 34 H 1.09006 * 109.98349 * 198.10951 * 17 16 15 35 35 H 1.09008 * 109.98507 * 319.36611 * 17 16 15 36 36 H 1.08004 * 125.76025 * 179.82502 * 20 19 18 37 37 H 1.07998 * 126.79629 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.94224 * 273.17152 * 23 14 13 39 39 H 1.08998 * 109.94121 * 34.33042 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1131 -1.8998 0.0004 13 6 5.8272 -4.2425 0.0003 14 7 7.2962 -4.2426 0.0008 15 6 7.8145 -5.5616 0.2910 16 6 9.2436 -5.6419 0.7709 17 6 10.2226 -5.3583 -0.3805 18 6 10.2557 -3.8509 -0.5680 19 8 11.2986 -3.0318 -0.3912 20 6 10.9177 -1.7671 -0.6535 21 6 9.6156 -1.7774 -1.0055 22 6 9.1996 -3.1174 -0.9519 23 6 7.8253 -3.6835 -1.2581 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8752 -0.6797 -0.8896 27 1 3.3695 -3.3126 -0.0001 28 1 5.4638 -4.7566 -0.8894 29 1 5.4639 -4.7560 0.8906 30 1 7.1782 -6.0132 1.0521 31 1 7.7293 -6.1632 -0.6140 32 1 9.3980 -4.9081 1.5620 33 1 9.4338 -6.6398 1.1661 34 1 11.2168 -5.7235 -0.1225 35 1 9.8740 -5.8412 -1.2934 36 1 11.5482 -0.8924 -0.5919 37 1 9.0119 -0.9238 -1.2762 38 1 7.9058 -4.4695 -2.0090 39 1 7.1688 -2.8915 -1.6180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808796877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:40 Heat of formation + Delta-G solvation = -10.309922 kcal Electronic energy + Delta-G solvation = -21639.650918 eV Core-core repulsion = 18356.159594 eV Total energy + Delta-G solvation = -3283.491324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.55026 -39.39333 -37.65559 -34.33350 -33.73388 -33.21770 -32.33257 -29.99059 -28.97833 -27.07670 -25.68077 -24.28998 -21.99313 -21.41706 -20.67860 -19.85776 -19.32346 -17.28129 -17.24197 -16.11264 -16.02222 -15.71933 -15.37363 -14.81735 -14.78412 -14.30234 -14.25210 -13.63713 -13.53836 -13.20940 -12.81471 -12.67922 -12.61600 -12.27400 -12.13637 -11.61677 -11.50898 -11.34452 -11.27415 -11.03050 -10.84275 -10.73297 -9.96529 -9.53212 -9.49245 -9.13281 -8.77155 -8.23094 -8.18970 -8.08555 -6.21558 -4.23625 1.85145 2.74703 3.05117 3.25625 3.29346 3.33520 3.42638 3.63232 4.26377 4.33924 4.57683 4.72780 4.80160 5.00699 5.04907 5.13897 5.20025 5.25677 5.30911 5.37913 5.43004 5.50390 5.56961 5.61176 5.72043 5.85526 5.97263 6.06215 6.21234 6.34895 6.69988 6.79656 6.97698 7.08994 7.18059 7.26572 7.29762 7.40999 8.15843 8.53958 8.76217 8.99146 9.39065 10.90443 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.004008 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.978231 B = 6985.221321 C = 7854.434204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.223 3.777 10 N -0.709 5.709 11 C 0.498 3.502 12 O -0.535 6.535 13 C 0.042 3.958 14 N -0.528 5.528 15 C 0.065 3.935 16 C -0.113 4.113 17 C -0.033 4.033 18 C -0.023 4.023 19 O -0.177 6.177 20 C -0.064 4.064 21 C -0.177 4.177 22 C -0.150 4.150 23 C 0.130 3.870 24 H 0.267 0.733 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.395 0.605 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.199 0.801 37 H 0.148 0.852 38 H 0.042 0.958 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.324 -12.341 -1.570 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.101 3.899 10 N -0.359 5.359 11 C 0.282 3.718 12 O -0.413 6.413 13 C -0.089 4.089 14 N -0.253 5.253 15 C -0.063 4.063 16 C -0.150 4.150 17 C -0.070 4.070 18 C -0.074 4.074 19 O -0.073 6.073 20 C -0.131 4.131 21 C -0.197 4.197 22 C -0.151 4.151 23 C 0.004 3.996 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.228 0.772 28 H 0.078 0.922 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.216 0.784 37 H 0.166 0.834 38 H 0.060 0.940 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.127 -11.349 -1.107 23.133 hybrid contribution -0.509 0.352 -0.607 0.867 sum 19.618 -10.997 -1.714 22.555 Atomic orbital electron populations 1.69886 1.06221 1.27411 1.49529 1.24798 0.94781 0.99176 0.93872 0.86815 0.80615 0.83240 0.79016 1.19886 1.20912 1.18478 1.21106 0.88601 0.95189 1.53222 0.90285 1.19449 0.95106 0.78715 0.96666 1.46174 1.05653 1.10945 1.73115 1.20368 0.83051 0.90710 0.77712 1.90662 1.55216 1.45886 1.49498 1.21967 0.88141 0.95976 1.02810 1.60038 1.05454 1.23981 1.35781 1.21144 0.96422 0.88718 1.00050 1.21386 0.93327 1.02368 0.97964 1.20565 1.00897 0.85698 0.99823 1.22333 0.85780 0.93541 1.05757 1.83915 1.37251 1.17124 1.69039 1.24032 0.96773 0.85050 1.07199 1.21547 0.95072 0.97644 1.05409 1.19955 0.95682 0.93265 1.06241 1.20835 0.92135 0.98201 0.88454 0.92278 0.95772 0.96314 0.77178 0.92203 0.88116 0.91074 0.95566 0.90449 0.90233 0.90121 0.89484 0.78440 0.83382 0.94013 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.54 -14.87 9.83 -34.44 -0.34 -15.21 16 8 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 9 C 0.22 5.47 4.50 -5.19 -0.02 5.44 16 10 N -0.71 -14.12 5.55 -61.47 -0.34 -14.46 16 11 C 0.50 9.31 7.29 -10.99 -0.08 9.23 16 12 O -0.54 -12.01 14.66 5.56 0.08 -11.92 16 13 C 0.04 0.57 5.42 -4.98 -0.03 0.54 16 14 N -0.53 -7.30 4.07 -239.46 -0.97 -8.27 16 15 C 0.06 0.66 4.84 -6.05 -0.03 0.63 16 16 C -0.11 -1.03 5.77 -27.36 -0.16 -1.19 16 17 C -0.03 -0.31 6.03 -26.87 -0.16 -0.47 16 18 C -0.02 -0.31 6.54 -35.12 -0.23 -0.54 16 19 O -0.18 -2.40 10.66 6.10 0.07 -2.34 16 20 C -0.06 -0.81 12.10 29.54 0.36 -0.45 16 21 C -0.18 -2.63 10.91 -39.95 -0.44 -3.06 16 22 C -0.15 -2.22 5.65 -104.71 -0.59 -2.81 16 23 C 0.13 1.87 5.02 -4.10 -0.02 1.85 16 24 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 27 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 28 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 29 H 0.10 1.15 7.68 -51.93 -0.40 0.75 16 30 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 31 H 0.03 0.24 7.54 -51.93 -0.39 -0.16 16 32 H 0.08 0.88 7.92 -51.93 -0.41 0.46 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.71 7.89 -51.92 -0.41 0.30 16 36 H 0.20 1.73 8.06 -52.48 -0.42 1.30 16 37 H 0.15 2.21 8.06 -52.49 -0.42 1.78 16 38 H 0.04 0.52 7.75 -51.93 -0.40 0.11 16 39 H 0.10 1.60 6.02 -51.93 -0.31 1.28 16 LS Contribution 318.58 15.07 4.80 4.80 Total: -1.00 -33.61 318.58 -7.61 -41.23 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -5.51 Total: 3.79 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.84 Total: -3.93 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.54 Total: -48.47 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.15 Total: -14.26 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.61 -7.61 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808796877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.917 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds