Wall clock time and date at job start Tue Mar 31 2020 00:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48499 * 109.47124 * 270.00568 * 3 2 1 5 5 H 1.48508 * 109.46788 * 29.99740 * 3 2 1 6 6 H 1.48496 * 109.47350 * 149.99944 * 3 2 1 7 7 C 1.37876 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00426 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99893 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47092 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99911 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00307 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99887 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.47374 * 180.02562 * 13 11 10 15 15 C 1.44667 * 111.00393 * 167.61041 * 14 13 11 16 16 C 1.50958 * 116.83601 * 199.56415 * 15 14 13 17 17 C 1.53771 * 110.78639 * 287.46857 * 16 15 14 18 18 C 1.51945 * 106.81252 * 78.78594 * 17 16 15 19 19 O 1.33789 * 127.44874 * 116.10719 * 18 17 16 20 20 C 1.34654 * 109.19076 * 180.26755 * 19 18 17 21 21 C 1.34891 * 108.46751 * 359.85941 * 20 19 18 22 22 C 1.34182 * 124.08858 * 296.05653 * 18 17 16 23 23 C 1.47552 * 110.99789 * 293.95582 * 14 13 11 24 24 H 0.97003 * 119.99570 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47482 * 59.99226 * 9 7 2 26 26 H 1.09003 * 109.46837 * 299.99269 * 9 7 2 27 27 H 0.97005 * 119.99752 * 359.97438 * 10 9 7 28 28 H 1.08996 * 109.47269 * 60.00087 * 13 11 10 29 29 H 1.09003 * 109.47025 * 300.00144 * 13 11 10 30 30 H 1.09002 * 107.97890 * 321.42162 * 15 14 13 31 31 H 1.09003 * 107.97439 * 77.70825 * 15 14 13 32 32 H 1.09006 * 109.21362 * 47.79997 * 16 15 14 33 33 H 1.09003 * 109.21707 * 167.12807 * 16 15 14 34 34 H 1.09006 * 109.98349 * 198.10951 * 17 16 15 35 35 H 1.09008 * 109.98507 * 319.36611 * 17 16 15 36 36 H 1.08004 * 125.76025 * 179.82502 * 20 19 18 37 37 H 1.07998 * 126.79629 * 179.97438 * 21 20 19 38 38 H 1.09002 * 109.94224 * 273.17152 * 23 14 13 39 39 H 1.08998 * 109.94121 * 34.33042 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0001 11 6 5.3249 -2.8216 -0.0001 12 8 6.1131 -1.8998 0.0004 13 6 5.8272 -4.2425 0.0003 14 7 7.2962 -4.2426 0.0008 15 6 7.8145 -5.5616 0.2910 16 6 9.2436 -5.6419 0.7709 17 6 10.2226 -5.3583 -0.3805 18 6 10.2557 -3.8509 -0.5680 19 8 11.2986 -3.0318 -0.3912 20 6 10.9177 -1.7671 -0.6535 21 6 9.6156 -1.7774 -1.0055 22 6 9.1996 -3.1174 -0.9519 23 6 7.8253 -3.6835 -1.2581 24 1 -0.4850 0.8401 -0.0004 25 1 3.8746 -0.6808 0.8904 26 1 3.8752 -0.6797 -0.8896 27 1 3.3695 -3.3126 -0.0001 28 1 5.4638 -4.7566 -0.8894 29 1 5.4639 -4.7560 0.8906 30 1 7.1782 -6.0132 1.0521 31 1 7.7293 -6.1632 -0.6140 32 1 9.3980 -4.9081 1.5620 33 1 9.4338 -6.6398 1.1661 34 1 11.2168 -5.7235 -0.1225 35 1 9.8740 -5.8412 -1.2934 36 1 11.5482 -0.8924 -0.5919 37 1 9.0119 -0.9238 -1.2762 38 1 7.9058 -4.4695 -2.0090 39 1 7.1688 -2.8915 -1.6180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808796877.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:40 Heat of formation + Delta-G solvation = -35.210808 kcal Electronic energy + Delta-G solvation = -21640.730702 eV Core-core repulsion = 18356.159594 eV Total energy + Delta-G solvation = -3284.571108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.55264 -40.76703 -38.78720 -36.10975 -34.68497 -34.41669 -34.19708 -30.93238 -30.61497 -28.53538 -26.60899 -25.41079 -23.78490 -22.49512 -21.55913 -21.39890 -20.33866 -19.11377 -18.23061 -17.67555 -17.27893 -16.91103 -16.58175 -16.28087 -15.91840 -15.79026 -15.36508 -15.04066 -14.68587 -14.49973 -14.19133 -14.02590 -13.86663 -13.72182 -13.35908 -13.05662 -12.76961 -12.65594 -12.40856 -12.21221 -12.04900 -11.95089 -11.67903 -11.64531 -10.92431 -10.68911 -10.59116 -9.86899 -9.18225 -9.15748 -8.41009 -6.47403 0.86682 1.30648 1.33263 1.46002 1.68283 1.81313 2.14192 2.26672 2.36767 2.94542 3.10697 3.78339 3.87637 3.96560 4.04404 4.08061 4.14784 4.30789 4.42197 4.46908 4.52618 4.58851 4.73193 4.79704 4.81067 4.89955 5.00689 5.03645 5.06657 5.22036 5.26624 5.30949 5.42393 5.56477 5.66206 5.94871 6.11277 6.27105 6.30708 6.54074 6.91813 7.16411 7.50014 8.73757 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026814 B = 0.004008 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.978231 B = 6985.221321 C = 7854.434204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.061 0.939 9 C 0.236 3.764 10 N -0.709 5.709 11 C 0.494 3.506 12 O -0.576 6.576 13 C 0.054 3.946 14 N -0.550 5.550 15 C 0.058 3.942 16 C -0.108 4.108 17 C -0.031 4.031 18 C -0.023 4.023 19 O -0.183 6.183 20 C -0.053 4.053 21 C -0.216 4.216 22 C -0.180 4.180 23 C 0.136 3.864 24 H 0.272 0.728 25 H 0.007 0.993 26 H 0.008 0.992 27 H 0.408 0.592 28 H 0.089 0.911 29 H 0.129 0.871 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.233 0.767 37 H 0.133 0.867 38 H 0.062 0.938 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.024 -14.282 -1.369 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.079 0.921 9 C 0.112 3.888 10 N -0.360 5.360 11 C 0.281 3.719 12 O -0.456 6.456 13 C -0.076 4.076 14 N -0.276 5.276 15 C -0.069 4.069 16 C -0.145 4.145 17 C -0.068 4.068 18 C -0.074 4.074 19 O -0.079 6.079 20 C -0.120 4.120 21 C -0.236 4.236 22 C -0.182 4.182 23 C 0.009 3.991 24 H 0.081 0.919 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.244 0.756 28 H 0.106 0.894 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.249 0.751 37 H 0.151 0.849 38 H 0.080 0.920 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.828 -13.335 -0.906 25.595 hybrid contribution -1.024 0.918 -0.666 1.528 sum 20.804 -12.417 -1.572 24.279 Atomic orbital electron populations 1.69981 1.07609 1.28566 1.50810 1.25572 0.95509 1.02546 0.93653 0.85882 0.79168 0.79574 0.79390 1.19018 1.19739 1.18846 1.21313 0.89985 0.94601 1.52420 0.92078 1.19008 0.93239 0.81336 0.95254 1.46020 1.06834 1.09463 1.73688 1.21370 0.81867 0.92863 0.75801 1.90651 1.56035 1.47908 1.50960 1.21923 0.88400 0.91911 1.05402 1.59982 1.05437 1.26521 1.35618 1.21309 0.97218 0.86893 1.01522 1.21406 0.92651 1.03511 0.96973 1.20803 1.02291 0.82922 1.00795 1.23026 0.84947 0.95202 1.04247 1.83936 1.37585 1.17476 1.68946 1.24609 0.96384 0.85735 1.05253 1.21677 0.96388 0.97819 1.07693 1.20193 0.96630 0.93569 1.07769 1.20688 0.91274 0.97763 0.89335 0.91854 0.97472 0.97442 0.75616 0.89372 0.85324 0.89402 0.93528 0.93075 0.86688 0.88174 0.87780 0.75061 0.84906 0.92022 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.96 21.45 0.30 -55.51 16 2 C 0.03 1.57 5.47 84.65 0.46 2.03 16 3 Si 0.94 44.77 27.47 68.60 1.88 46.66 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.26 -12.69 6.54 99.48 0.65 -12.03 16 7 C -0.55 -30.26 9.83 25.60 0.25 -30.01 16 8 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 9 C 0.24 11.71 4.50 85.63 0.38 12.09 16 10 N -0.71 -28.11 5.55 -466.78 -2.59 -30.70 16 11 C 0.49 18.32 7.29 87.66 0.64 18.96 16 12 O -0.58 -26.44 14.66 -3.03 -0.04 -26.48 16 13 C 0.05 1.33 5.42 85.56 0.46 1.80 16 14 N -0.55 -14.17 4.07 -911.53 -3.71 -17.88 16 15 C 0.06 0.97 4.84 86.06 0.42 1.38 16 16 C -0.11 -1.60 5.77 30.19 0.17 -1.42 16 17 C -0.03 -0.48 6.03 30.51 0.18 -0.30 16 18 C -0.02 -0.58 6.54 25.16 0.16 -0.42 16 19 O -0.18 -4.75 10.66 -1.09 -0.01 -4.76 16 20 C -0.05 -1.32 12.10 67.05 0.81 -0.51 16 21 C -0.22 -6.63 10.91 22.03 0.24 -6.39 16 22 C -0.18 -5.32 5.65 -19.92 -0.11 -5.43 16 23 C 0.14 3.84 5.02 85.77 0.43 4.27 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.01 0.39 7.20 -2.39 -0.02 0.37 16 26 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 27 H 0.41 13.87 8.32 -92.70 -0.77 13.10 16 28 H 0.09 1.73 8.12 -2.39 -0.02 1.71 16 29 H 0.13 2.49 7.68 -2.39 -0.02 2.47 16 30 H 0.09 1.19 7.53 -2.39 -0.02 1.17 16 31 H 0.05 0.62 7.54 -2.39 -0.02 0.60 16 32 H 0.05 1.05 7.92 -2.38 -0.02 1.03 16 33 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.10 1.28 7.89 -2.38 -0.02 1.27 16 36 H 0.23 3.72 8.06 -2.91 -0.02 3.69 16 37 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 38 H 0.06 1.42 7.75 -2.39 -0.02 1.40 16 39 H 0.06 2.11 6.02 -2.39 -0.01 2.09 16 Total: -1.00 -74.98 318.58 0.58 -74.40 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.23 Total: 18.22 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 4.51 Total: -3.95 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -6.00 Total: -104.08 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.06 Total: -31.24 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.66 kcal Total: -74.98 0.58 -74.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808796877.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.192 kcal (2) G-P(sol) polarization free energy of solvation -74.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds