Wall clock time and date at job start Mon Mar 30 2020 23:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.52998 * 109.46963 * 269.99561 * 3 2 1 6 6 O 1.45198 * 109.47207 * 65.00297 * 5 3 2 7 7 C 1.34229 * 117.00299 * 180.02562 * 6 5 3 8 8 O 1.20824 * 119.99923 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99960 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.47196 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47460 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00309 * 179.97438 * 11 10 9 14 14 N 1.31524 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00420 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46815 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47336 * 120.00035 * 15 13 11 18 18 H 1.48505 * 109.46766 * 239.99970 * 15 13 11 19 19 C 1.50704 * 109.47175 * 149.99736 * 3 2 1 20 20 C 1.38236 * 120.00039 * 39.72451 * 19 3 2 21 21 C 1.38233 * 120.00077 * 179.79050 * 20 19 3 22 22 C 1.38239 * 119.99726 * 0.43731 * 21 20 19 23 23 C 1.38228 * 120.00042 * 359.81596 * 22 21 20 24 24 C 1.38231 * 120.00369 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 28 28 H 1.09003 * 109.47319 * 184.99990 * 5 3 2 29 29 H 1.09002 * 109.47191 * 305.00149 * 5 3 2 30 30 H 1.09004 * 109.47153 * 299.99473 * 9 7 6 31 31 H 1.09000 * 109.47727 * 59.99903 * 9 7 6 32 32 H 1.09004 * 109.46730 * 299.99844 * 10 9 7 33 33 H 1.09000 * 109.46771 * 59.99429 * 10 9 7 34 34 H 0.97002 * 119.99907 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.99846 * 359.97438 * 20 19 3 36 36 H 1.07996 * 119.99993 * 180.27983 * 21 20 19 37 37 H 1.07996 * 119.99665 * 179.83926 * 22 21 20 38 38 H 1.08002 * 119.99946 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.00708 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 8 0.9281 1.9250 -2.0917 7 6 0.9345 2.3305 -3.3713 8 8 1.9829 2.5501 -3.9302 9 6 -0.3661 2.5128 -4.1104 10 6 -0.0796 2.9775 -5.5397 11 6 -1.3801 3.1593 -6.2790 12 1 -2.3173 2.9626 -5.7795 13 6 -1.3737 3.5767 -7.5930 14 7 -0.2324 3.8157 -8.2015 15 14 -2.9858 3.8027 -8.5093 16 1 -4.1182 3.4704 -7.6079 17 1 -3.1068 5.2131 -8.9576 18 1 -3.0138 2.9035 -9.6908 19 6 3.3386 1.2639 0.7105 20 6 4.1871 0.1881 0.5272 21 6 5.4075 0.1520 1.1755 22 6 5.7754 1.1875 2.0142 23 6 4.9247 2.2608 2.2015 24 6 3.7063 2.2990 1.5498 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 2.7414 2.7273 -1.4439 29 1 2.8100 1.0318 -1.9815 30 1 -0.9048 1.5656 -4.1370 31 1 -0.9722 3.2613 -3.6000 32 1 0.4589 3.9249 -5.5127 33 1 0.5267 2.2294 -6.0503 34 1 -0.2279 4.1097 -9.1258 35 1 3.8979 -0.6229 -0.1248 36 1 6.0723 -0.6863 1.0288 37 1 6.7277 1.1581 2.5227 38 1 5.2120 3.0696 2.8570 39 1 3.0413 3.1373 1.6965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:37 Heat of formation + Delta-G solvation = -120.807142 kcal Electronic energy + Delta-G solvation = -20776.954891 eV Core-core repulsion = 17456.379296 eV Total energy + Delta-G solvation = -3320.575594 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24156 -39.51797 -37.82508 -35.95353 -33.59643 -32.74971 -31.16998 -31.13258 -28.88688 -26.74144 -25.88639 -23.82156 -22.76795 -22.03888 -21.09320 -19.82033 -17.57278 -17.11375 -16.96198 -16.50250 -15.93327 -15.75570 -15.62110 -14.71934 -14.67877 -14.49352 -14.35562 -13.63060 -13.59056 -13.16258 -12.85751 -12.58657 -12.35255 -12.25842 -11.88522 -11.52022 -11.31867 -11.21223 -11.13334 -10.98658 -10.63933 -10.37379 -10.06782 -10.00905 -9.80297 -9.50192 -9.18106 -9.14579 -9.02325 -8.39195 -6.02666 -4.07675 1.02722 1.18000 2.82236 3.00931 3.29888 3.37287 3.40763 3.43812 3.69440 4.42703 4.54813 4.64838 4.76126 4.82771 4.90505 4.94491 5.24168 5.29622 5.31661 5.32800 5.35755 5.46451 5.52165 5.68667 5.72903 5.81445 5.83444 6.09786 6.16808 6.20845 6.28134 6.30072 6.62705 6.73753 6.92402 7.01636 7.65455 7.72067 7.96861 8.24148 8.39957 8.99674 9.56528 11.08371 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.002933 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.893233 B = 9545.767906 C = 9965.187797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.377 6.377 3 C 0.136 3.864 4 H 0.080 0.920 5 C 0.047 3.953 6 O -0.366 6.366 7 C 0.455 3.545 8 O -0.504 6.504 9 C -0.102 4.102 10 C 0.032 3.968 11 C -0.528 4.528 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.889 5.889 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.089 4.089 20 C -0.087 4.087 21 C -0.124 4.124 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.106 4.106 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.261 0.739 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 -6.025 22.485 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.078 3.922 4 H 0.098 0.902 5 C -0.027 4.027 6 O -0.284 6.284 7 C 0.299 3.701 8 O -0.390 6.390 9 C -0.140 4.140 10 C -0.005 4.005 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.528 5.528 15 Si 0.723 3.277 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.089 4.089 20 C -0.105 4.105 21 C -0.142 4.142 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.124 4.124 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.648 -6.075 22.159 24.216 hybrid contribution -0.783 0.397 -0.611 1.070 sum 6.865 -5.679 21.548 23.317 Atomic orbital electron populations 1.22924 0.80039 1.02778 1.01086 1.87880 1.20647 1.26140 1.94936 1.20830 0.92414 0.86106 0.92837 0.90211 1.23532 0.84606 1.02127 0.92462 1.86526 1.34124 1.79460 1.28330 1.24794 0.93825 0.72344 0.79124 1.90640 1.34411 1.46336 1.67609 1.21765 0.90045 1.03609 0.98583 1.19026 0.97397 0.97614 0.86440 1.21184 0.92417 1.46122 0.96868 0.92263 1.25030 0.96377 0.95335 0.97641 1.70010 1.25019 1.45711 1.12013 0.86485 0.83627 0.77774 0.79794 1.19654 1.20960 1.20954 1.19527 0.94935 0.95958 0.98470 1.21076 0.93156 0.97670 0.98627 1.21203 0.96633 0.98950 0.97386 1.21213 0.99560 0.94225 0.98399 1.21098 0.94261 0.98622 1.00110 1.21016 0.97140 0.98014 0.96224 0.94241 0.89749 0.91915 0.90546 0.90526 0.88984 0.89000 0.95596 0.95581 0.92890 0.85290 0.85829 0.86021 0.85805 0.85759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.71 101.05 1.08 1.38 16 2 O -0.38 -4.75 9.66 -38.80 -0.37 -5.13 16 3 C 0.14 1.62 2.71 -27.88 -0.08 1.54 16 4 H 0.08 0.84 7.65 -51.93 -0.40 0.45 16 5 C 0.05 0.68 5.10 37.16 0.19 0.87 16 6 O -0.37 -6.00 8.33 -42.02 -0.35 -6.35 16 7 C 0.46 9.04 7.96 36.00 0.29 9.33 16 8 O -0.50 -11.69 15.73 -18.75 -0.29 -11.98 16 9 C -0.10 -2.08 5.75 -27.88 -0.16 -2.25 16 10 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 11 C -0.53 -14.73 9.11 -34.44 -0.31 -15.05 16 12 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 15 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 C -0.09 -0.98 4.97 -104.62 -0.52 -1.50 16 20 C -0.09 -0.94 9.36 -39.58 -0.37 -1.31 16 21 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 22 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 23 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 24 C -0.11 -1.01 9.67 -39.58 -0.38 -1.40 16 25 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.74 6.37 -51.93 -0.33 0.41 16 28 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 29 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 30 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 31 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.13 1.39 7.77 -52.48 -0.41 0.98 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.97 8.04 -52.48 -0.42 0.55 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -32.95 338.10 -7.62 -40.58 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -5.74 Total: -1.85 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -1.67 Total: -10.44 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.02 Total: -23.46 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.95 -7.62 -40.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.230 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds