Wall clock time and date at job start Mon Mar 30 2020 23:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.52998 * 109.46963 * 269.99561 * 3 2 1 6 6 O 1.45198 * 109.47207 * 65.00297 * 5 3 2 7 7 C 1.34229 * 117.00299 * 180.02562 * 6 5 3 8 8 O 1.20824 * 119.99923 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99960 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.47196 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47460 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.37869 * 120.00309 * 179.97438 * 11 10 9 14 14 N 1.31524 * 119.99832 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00420 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46815 * 359.97438 * 15 13 11 17 17 H 1.48491 * 109.47336 * 120.00035 * 15 13 11 18 18 H 1.48505 * 109.46766 * 239.99970 * 15 13 11 19 19 C 1.50704 * 109.47175 * 149.99736 * 3 2 1 20 20 C 1.38236 * 120.00039 * 39.72451 * 19 3 2 21 21 C 1.38233 * 120.00077 * 179.79050 * 20 19 3 22 22 C 1.38239 * 119.99726 * 0.43731 * 21 20 19 23 23 C 1.38228 * 120.00042 * 359.81596 * 22 21 20 24 24 C 1.38231 * 120.00369 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 26 26 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 28 28 H 1.09003 * 109.47319 * 184.99990 * 5 3 2 29 29 H 1.09002 * 109.47191 * 305.00149 * 5 3 2 30 30 H 1.09004 * 109.47153 * 299.99473 * 9 7 6 31 31 H 1.09000 * 109.47727 * 59.99903 * 9 7 6 32 32 H 1.09004 * 109.46730 * 299.99844 * 10 9 7 33 33 H 1.09000 * 109.46771 * 59.99429 * 10 9 7 34 34 H 0.97002 * 119.99907 * 180.02562 * 14 13 11 35 35 H 1.08003 * 119.99846 * 359.97438 * 20 19 3 36 36 H 1.07996 * 119.99993 * 180.27983 * 21 20 19 37 37 H 1.07996 * 119.99665 * 179.83926 * 22 21 20 38 38 H 1.08002 * 119.99946 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.00708 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 8 0.9281 1.9250 -2.0917 7 6 0.9345 2.3305 -3.3713 8 8 1.9829 2.5501 -3.9302 9 6 -0.3661 2.5128 -4.1104 10 6 -0.0796 2.9775 -5.5397 11 6 -1.3801 3.1593 -6.2790 12 1 -2.3173 2.9626 -5.7795 13 6 -1.3737 3.5767 -7.5930 14 7 -0.2324 3.8157 -8.2015 15 14 -2.9858 3.8027 -8.5093 16 1 -4.1182 3.4704 -7.6079 17 1 -3.1068 5.2131 -8.9576 18 1 -3.0138 2.9035 -9.6908 19 6 3.3386 1.2639 0.7105 20 6 4.1871 0.1881 0.5272 21 6 5.4075 0.1520 1.1755 22 6 5.7754 1.1875 2.0142 23 6 4.9247 2.2608 2.2015 24 6 3.7063 2.2990 1.5498 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8901 28 1 2.7414 2.7273 -1.4439 29 1 2.8100 1.0318 -1.9815 30 1 -0.9048 1.5656 -4.1370 31 1 -0.9722 3.2613 -3.6000 32 1 0.4589 3.9249 -5.5127 33 1 0.5267 2.2294 -6.0503 34 1 -0.2279 4.1097 -9.1258 35 1 3.8979 -0.6229 -0.1248 36 1 6.0723 -0.6863 1.0288 37 1 6.7277 1.1581 2.5227 38 1 5.2120 3.0696 2.8570 39 1 3.0413 3.1373 1.6965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:36 Heat of formation + Delta-G solvation = -139.400078 kcal Electronic energy + Delta-G solvation = -20777.761141 eV Core-core repulsion = 17456.379296 eV Total energy + Delta-G solvation = -3321.381845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62231 -40.47894 -38.77412 -37.41677 -35.66126 -33.65572 -33.09992 -31.82700 -29.94211 -28.07023 -27.36537 -24.97545 -23.83724 -23.42340 -21.96759 -21.45595 -19.15001 -18.32852 -18.17121 -17.77924 -17.41590 -17.12261 -16.51127 -16.38853 -15.87473 -15.47660 -15.36667 -15.05922 -14.36527 -14.27314 -14.17440 -13.98285 -13.78793 -13.54888 -13.24231 -12.88291 -12.83038 -12.49001 -12.40944 -12.05472 -12.02980 -11.95835 -11.76310 -11.63372 -11.49068 -11.27945 -10.66441 -10.59486 -9.84996 -9.78463 -8.20681 -6.34605 0.29028 0.47489 1.20897 1.43081 1.44308 1.57298 1.64296 2.42591 2.63012 2.87326 3.13286 3.63968 3.72840 3.84031 3.98911 4.08370 4.15289 4.20256 4.30105 4.37445 4.44139 4.48721 4.58647 4.62183 4.68717 4.71472 4.90636 4.95543 5.01657 5.13288 5.34123 5.46411 5.52214 5.53663 5.55462 5.59482 5.79850 6.05576 6.12008 6.14131 6.75558 6.85076 7.35877 8.92261 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034909 B = 0.002933 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.893233 B = 9545.767906 C = 9965.187797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.145 3.855 4 H 0.096 0.904 5 C 0.045 3.955 6 O -0.350 6.350 7 C 0.464 3.536 8 O -0.545 6.545 9 C -0.092 4.092 10 C 0.037 3.963 11 C -0.542 4.542 12 H 0.079 0.921 13 C -0.006 4.006 14 N -0.937 5.937 15 Si 0.975 3.025 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.281 1.281 19 C -0.108 4.108 20 C -0.107 4.107 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.126 4.126 24 C -0.113 4.113 25 H 0.057 0.943 26 H 0.098 0.902 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.116 0.884 31 H 0.119 0.881 32 H -0.010 1.010 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.119 0.881 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -5.983 24.465 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C 0.087 3.913 4 H 0.114 0.886 5 C -0.029 4.029 6 O -0.267 6.267 7 C 0.309 3.691 8 O -0.435 6.435 9 C -0.130 4.130 10 C 0.000 4.000 11 C -0.580 4.580 12 H 0.097 0.903 13 C -0.203 4.203 14 N -0.576 5.576 15 Si 0.799 3.201 16 H -0.176 1.176 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.108 4.108 20 C -0.125 4.125 21 C -0.149 4.149 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.131 4.131 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.355 -6.051 24.184 25.727 hybrid contribution -0.291 0.352 -1.138 1.226 sum 6.065 -5.699 23.046 24.503 Atomic orbital electron populations 1.23066 0.79076 1.03876 1.01296 1.87880 1.21807 1.26620 1.94829 1.20808 0.93478 0.86147 0.90880 0.88610 1.23795 0.83385 1.01934 0.93817 1.86509 1.35314 1.78432 1.26406 1.24615 0.92960 0.71525 0.80001 1.90634 1.35734 1.48355 1.68795 1.21526 0.90791 1.05405 0.95232 1.18809 0.96229 0.94839 0.90113 1.21666 0.93408 1.45524 0.97369 0.90304 1.26121 1.00415 0.94868 0.98928 1.70175 1.27977 1.46961 1.12535 0.85251 0.78938 0.77643 0.78289 1.17567 1.20607 1.20688 1.19574 0.94723 0.96921 0.99596 1.21152 0.94220 0.97768 0.99392 1.21462 0.96260 0.99958 0.97257 1.21586 1.00522 0.93614 0.97737 1.21470 0.93695 0.99291 0.99886 1.21277 0.97992 0.97965 0.95882 0.92420 0.88378 0.93185 0.90451 0.91971 0.86566 0.86317 0.99201 0.99379 0.92763 0.86331 0.84196 0.83445 0.83273 0.84164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.71 113.37 1.21 1.66 16 2 O -0.39 -9.63 9.66 -145.57 -1.41 -11.04 16 3 C 0.15 3.33 2.71 29.85 0.08 3.41 16 4 H 0.10 1.86 7.65 -2.39 -0.02 1.85 16 5 C 0.04 1.30 5.10 71.98 0.37 1.67 16 6 O -0.35 -11.27 8.33 -48.76 -0.41 -11.68 16 7 C 0.46 18.55 7.96 71.23 0.57 19.12 16 8 O -0.55 -26.29 15.73 21.97 0.35 -25.94 16 9 C -0.09 -3.71 5.75 29.85 0.17 -3.53 16 10 C 0.04 2.03 4.26 29.85 0.13 2.16 16 11 C -0.54 -30.21 9.11 25.60 0.23 -29.98 16 12 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 13 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 14 N -0.94 -58.47 13.29 21.45 0.28 -58.19 16 15 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 16 H -0.25 -10.41 7.11 99.48 0.71 -9.70 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 C -0.11 -2.32 4.97 -19.86 -0.10 -2.42 16 20 C -0.11 -2.31 9.36 22.27 0.21 -2.10 16 21 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 22 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 23 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 24 C -0.11 -1.98 9.67 22.27 0.22 -1.76 16 25 H 0.06 0.92 8.09 -2.39 -0.02 0.90 16 26 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.10 6.37 -2.38 -0.02 1.09 16 28 H 0.08 2.22 8.13 -2.39 -0.02 2.20 16 29 H 0.06 1.98 8.13 -2.39 -0.02 1.96 16 30 H 0.12 4.13 8.14 -2.38 -0.02 4.11 16 31 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 32 H -0.01 -0.64 8.10 -2.38 -0.02 -0.66 16 33 H -0.01 -0.75 8.10 -2.39 -0.02 -0.77 16 34 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 35 H 0.12 2.68 7.77 -2.91 -0.02 2.66 16 36 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 38 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.14 1.89 8.04 -2.91 -0.02 1.87 16 Total: -1.00 -73.05 338.10 6.09 -66.96 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.02 Total: 11.00 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 4.22 Total: -16.80 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.28 Total: -58.19 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -1.47 Total: -48.66 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -73.05 6.09 -66.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.435 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds