Wall clock time and date at job start Mon Mar 30 2020 23:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99790 * 2 1 4 4 C 1.50696 * 109.47113 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99941 * 89.99869 * 4 3 2 6 6 C 1.38215 * 120.00294 * 180.02562 * 5 4 3 7 7 C 1.38256 * 119.99734 * 359.97438 * 6 5 4 8 8 C 1.38217 * 120.00088 * 0.02885 * 7 6 5 9 9 C 1.50700 * 119.99988 * 180.02562 * 8 7 6 10 10 O 1.45204 * 109.47377 * 269.97522 * 9 8 7 11 11 C 1.34229 * 117.00040 * 179.97438 * 10 9 8 12 12 O 1.20828 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.50692 * 119.99757 * 180.02562 * 11 10 9 14 14 C 1.53005 * 109.47329 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47329 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00501 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99871 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99664 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99723 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47019 * 90.00119 * 19 17 15 21 21 H 1.48501 * 109.46783 * 209.99415 * 19 17 15 22 22 H 1.48493 * 109.47098 * 329.99555 * 19 17 15 23 23 C 1.38212 * 120.00198 * 270.02627 * 4 3 2 24 24 H 1.09001 * 109.46787 * 299.99552 * 1 2 3 25 25 H 1.08995 * 109.47339 * 59.99710 * 1 2 3 26 26 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46763 * 60.00462 * 3 2 1 28 28 H 1.08998 * 109.47259 * 299.99900 * 3 2 1 29 29 H 1.08000 * 120.00399 * 0.02562 * 5 4 3 30 30 H 1.07995 * 120.00164 * 179.70679 * 6 5 4 31 31 H 1.08001 * 120.00211 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47092 * 29.97816 * 9 8 7 33 33 H 1.09003 * 109.47158 * 149.97551 * 9 8 7 34 34 H 1.09006 * 109.47437 * 299.99899 * 13 11 10 35 35 H 1.09002 * 109.47577 * 59.99813 * 13 11 10 36 36 H 1.09006 * 109.46508 * 300.00136 * 14 13 11 37 37 H 1.09002 * 109.47215 * 59.99259 * 14 13 11 38 38 H 0.97006 * 119.99394 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.99961 * 359.97326 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2021 1.1318 -1.1964 6 6 5.5799 1.0221 -1.1959 7 6 6.2685 0.9678 0.0017 8 6 5.5792 1.0226 1.1985 9 6 6.3299 0.9639 2.5038 10 8 6.4630 -0.4196 2.9240 11 6 7.1125 -0.6467 4.0765 12 8 7.5555 0.2799 4.7130 13 6 7.2902 -2.0573 4.5759 14 6 8.0575 -2.0370 5.8995 15 6 8.2346 -3.4475 6.3992 16 1 7.8391 -4.2758 5.8301 17 6 8.9017 -3.6808 7.5832 18 7 9.3838 -2.6723 8.2760 19 14 9.1206 -5.4294 8.2030 20 1 10.3872 -5.9896 7.6672 21 1 9.1697 -5.4259 9.6872 22 1 7.9789 -6.2625 7.7474 23 6 4.2009 1.1317 1.1979 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 3.6642 1.1746 -2.1319 30 1 6.1182 0.9746 -2.1309 31 1 7.3452 0.8826 0.0022 32 1 7.3199 1.4010 2.3736 33 1 5.7829 1.5231 3.2630 34 1 6.3125 -2.5140 4.7302 35 1 7.8492 -2.6356 3.8403 36 1 9.0352 -1.5801 5.7456 37 1 7.4981 -1.4588 6.6350 38 1 9.8534 -2.8365 9.1087 39 1 3.6623 1.1745 2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:36 Heat of formation + Delta-G solvation = -121.595933 kcal Electronic energy + Delta-G solvation = -20217.303199 eV Core-core repulsion = 16896.693399 eV Total energy + Delta-G solvation = -3320.609799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.17646 -39.50027 -37.86738 -36.11540 -33.56431 -32.72582 -31.81392 -31.05680 -27.68536 -27.00192 -25.61897 -25.54203 -22.46671 -22.08323 -20.86886 -19.77811 -17.31831 -17.03896 -16.67087 -16.54471 -16.21659 -15.96409 -15.84208 -15.20923 -14.96498 -14.45396 -14.28362 -13.47720 -13.31952 -13.05073 -12.88754 -12.62525 -12.27909 -12.20570 -12.13601 -11.73904 -11.33340 -11.21903 -11.11851 -10.94641 -10.62668 -10.36404 -10.04253 -10.02310 -9.92952 -9.58403 -9.17485 -9.07290 -8.96307 -8.36269 -6.00158 -4.04840 0.97255 1.12597 2.84954 3.01240 3.32956 3.38901 3.41966 3.53002 3.90238 4.44220 4.48327 4.52226 4.66006 4.85735 4.89881 4.95637 5.03214 5.05585 5.15151 5.23580 5.34941 5.35297 5.36298 5.44052 5.66902 5.76450 5.82740 6.15283 6.20446 6.23240 6.29520 6.37968 6.66612 6.72588 6.80218 6.96160 7.68211 7.75264 7.99667 8.27592 8.43540 9.02336 9.59115 11.10900 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.002829 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.876113 B = 9894.223236 C =10582.855089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.104 3.896 4 C -0.099 4.099 5 C -0.092 4.092 6 C -0.126 4.126 7 C -0.088 4.088 8 C -0.092 4.092 9 C 0.104 3.896 10 O -0.360 6.360 11 C 0.456 3.544 12 O -0.507 6.507 13 C -0.103 4.103 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.896 3.104 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.073 4.073 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.649 9.643 -20.455 26.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.027 3.973 4 C -0.099 4.099 5 C -0.110 4.110 6 C -0.144 4.144 7 C -0.106 4.106 8 C -0.092 4.092 9 C 0.030 3.970 10 O -0.278 6.278 11 C 0.300 3.700 12 O -0.393 6.393 13 C -0.141 4.141 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.092 4.092 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.318 9.839 -20.101 26.568 hybrid contribution -0.014 -0.514 0.416 0.662 sum -14.332 9.325 -19.685 26.074 Atomic orbital electron populations 1.22772 0.80916 1.03021 0.99934 1.88013 1.19642 1.27238 1.95378 1.21330 0.89769 0.85263 1.00904 1.19524 0.94027 1.02859 0.93456 1.21062 0.94340 0.98250 0.97365 1.21123 0.94180 1.00997 0.98064 1.21169 1.00354 0.97318 0.91769 1.19580 0.93633 1.01930 0.94023 1.21680 1.00259 0.82023 0.92999 1.86654 1.70949 1.29432 1.40803 1.24805 0.73549 0.94290 0.77341 1.90633 1.46091 1.46164 1.56427 1.21773 1.03798 0.86982 1.01528 1.19021 0.95464 0.97441 0.88487 1.21164 1.36524 0.92227 1.06694 0.92291 1.25026 0.95498 0.97154 0.96686 1.69998 1.37178 1.30445 1.15221 0.86537 0.78554 0.84631 0.77930 1.20609 1.21199 1.19767 1.20981 0.93321 0.97029 0.97831 0.93928 0.94109 0.89414 0.92313 0.92410 0.85899 0.85535 0.85514 0.90483 0.90571 0.88930 0.88933 0.95591 0.95587 0.92864 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.07 10.69 -35.23 -0.38 -4.45 16 3 C 0.10 0.90 6.06 36.00 0.22 1.12 16 4 C -0.10 -1.03 5.51 -104.63 -0.58 -1.61 16 5 C -0.09 -0.87 9.70 -39.58 -0.38 -1.26 16 6 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 7 C -0.09 -0.97 9.70 -39.58 -0.38 -1.35 16 8 C -0.09 -1.14 5.52 -104.62 -0.58 -1.72 16 9 C 0.10 1.49 5.59 36.01 0.20 1.69 16 10 O -0.36 -6.26 10.20 -39.26 -0.40 -6.66 16 11 C 0.46 9.24 7.96 36.00 0.29 9.53 16 12 O -0.51 -11.69 15.73 -18.75 -0.29 -11.99 16 13 C -0.10 -2.17 5.75 -27.88 -0.16 -2.33 16 14 C 0.03 0.88 4.26 -27.88 -0.12 0.76 16 15 C -0.53 -14.93 9.11 -34.44 -0.31 -15.25 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 19 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.07 -0.86 9.36 -39.58 -0.37 -1.23 16 24 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 33 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 34 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 36 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -33.81 343.32 -7.61 -41.42 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.87 Total: -3.30 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -1.56 Total: -10.31 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -1.07 Total: -23.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.81 -7.61 -41.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.174 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds