Wall clock time and date at job start Mon Mar 30 2020 23:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42903 * 113.99790 * 2 1 4 4 C 1.50696 * 109.47113 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99941 * 89.99869 * 4 3 2 6 6 C 1.38215 * 120.00294 * 180.02562 * 5 4 3 7 7 C 1.38256 * 119.99734 * 359.97438 * 6 5 4 8 8 C 1.38217 * 120.00088 * 0.02885 * 7 6 5 9 9 C 1.50700 * 119.99988 * 180.02562 * 8 7 6 10 10 O 1.45204 * 109.47377 * 269.97522 * 9 8 7 11 11 C 1.34229 * 117.00040 * 179.97438 * 10 9 8 12 12 O 1.20828 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.50692 * 119.99757 * 180.02562 * 11 10 9 14 14 C 1.53005 * 109.47329 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47329 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00501 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99871 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99664 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99723 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47019 * 90.00119 * 19 17 15 21 21 H 1.48501 * 109.46783 * 209.99415 * 19 17 15 22 22 H 1.48493 * 109.47098 * 329.99555 * 19 17 15 23 23 C 1.38212 * 120.00198 * 270.02627 * 4 3 2 24 24 H 1.09001 * 109.46787 * 299.99552 * 1 2 3 25 25 H 1.08995 * 109.47339 * 59.99710 * 1 2 3 26 26 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46763 * 60.00462 * 3 2 1 28 28 H 1.08998 * 109.47259 * 299.99900 * 3 2 1 29 29 H 1.08000 * 120.00399 * 0.02562 * 5 4 3 30 30 H 1.07995 * 120.00164 * 179.70679 * 6 5 4 31 31 H 1.08001 * 120.00211 * 180.02562 * 7 6 5 32 32 H 1.09001 * 109.47092 * 29.97816 * 9 8 7 33 33 H 1.09003 * 109.47158 * 149.97551 * 9 8 7 34 34 H 1.09006 * 109.47437 * 299.99899 * 13 11 10 35 35 H 1.09002 * 109.47577 * 59.99813 * 13 11 10 36 36 H 1.09006 * 109.46508 * 300.00136 * 14 13 11 37 37 H 1.09002 * 109.47215 * 59.99259 * 14 13 11 38 38 H 0.97006 * 119.99394 * 180.02562 * 18 17 15 39 39 H 1.08000 * 119.99961 * 359.97326 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2021 1.1318 -1.1964 6 6 5.5799 1.0221 -1.1959 7 6 6.2685 0.9678 0.0017 8 6 5.5792 1.0226 1.1985 9 6 6.3299 0.9639 2.5038 10 8 6.4630 -0.4196 2.9240 11 6 7.1125 -0.6467 4.0765 12 8 7.5555 0.2799 4.7130 13 6 7.2902 -2.0573 4.5759 14 6 8.0575 -2.0370 5.8995 15 6 8.2346 -3.4475 6.3992 16 1 7.8391 -4.2758 5.8301 17 6 8.9017 -3.6808 7.5832 18 7 9.3838 -2.6723 8.2760 19 14 9.1206 -5.4294 8.2030 20 1 10.3872 -5.9896 7.6672 21 1 9.1697 -5.4259 9.6872 22 1 7.9789 -6.2625 7.7474 23 6 4.2009 1.1317 1.1979 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6886 1.8464 0.8901 28 1 1.6886 1.8464 -0.8900 29 1 3.6642 1.1746 -2.1319 30 1 6.1182 0.9746 -2.1309 31 1 7.3452 0.8826 0.0022 32 1 7.3199 1.4010 2.3736 33 1 5.7829 1.5231 3.2630 34 1 6.3125 -2.5140 4.7302 35 1 7.8492 -2.6356 3.8403 36 1 9.0352 -1.5801 5.7456 37 1 7.4981 -1.4588 6.6350 38 1 9.8534 -2.8365 9.1087 39 1 3.6623 1.1745 2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:54:36 Heat of formation + Delta-G solvation = -141.171945 kcal Electronic energy + Delta-G solvation = -20218.152078 eV Core-core repulsion = 16896.693399 eV Total energy + Delta-G solvation = -3321.458679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57658 -40.47292 -38.59468 -37.60400 -35.65386 -33.68429 -33.07880 -32.54941 -28.65068 -28.16661 -27.16283 -26.25245 -24.15704 -23.09308 -21.76778 -21.48829 -19.10472 -18.21486 -17.79432 -17.74469 -17.31505 -16.98623 -16.87688 -16.47786 -16.30865 -15.88964 -15.14629 -14.97925 -14.51604 -14.24380 -14.04905 -13.81988 -13.58552 -13.44648 -13.15281 -13.10396 -12.83034 -12.51653 -12.35079 -12.11698 -12.03780 -11.99720 -11.76156 -11.67974 -11.44738 -11.28019 -10.65634 -10.57963 -9.88280 -9.83150 -8.20286 -6.34094 0.12510 0.31849 1.21506 1.43342 1.45823 1.56937 1.78562 2.42874 2.64381 3.13455 3.18588 3.54335 3.72224 3.89812 3.99503 4.08832 4.12949 4.26454 4.32735 4.40644 4.43972 4.44855 4.49113 4.55890 4.58272 4.69292 4.88029 4.90640 4.94773 5.03691 5.33065 5.43740 5.46884 5.52064 5.54163 5.54645 5.80201 5.95756 6.12988 6.20978 6.77214 6.85447 7.36089 8.92436 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.002829 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.876113 B = 9894.223236 C =10582.855089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.102 3.898 4 C -0.108 4.108 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.098 4.098 8 C -0.111 4.111 9 C 0.102 3.898 10 O -0.354 6.354 11 C 0.466 3.534 12 O -0.543 6.543 13 C -0.095 4.095 14 C 0.039 3.961 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.004 4.004 18 N -0.936 5.936 19 Si 0.975 3.025 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.256 1.256 23 C -0.088 4.088 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.116 0.884 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.864 8.460 -22.664 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.026 3.974 4 C -0.108 4.108 5 C -0.108 4.108 6 C -0.141 4.141 7 C -0.116 4.116 8 C -0.111 4.111 9 C 0.028 3.972 10 O -0.272 6.272 11 C 0.311 3.689 12 O -0.433 6.433 13 C -0.132 4.132 14 C 0.002 3.998 15 C -0.582 4.582 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.799 3.201 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.180 1.180 23 C -0.106 4.106 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.562 8.653 -22.350 28.576 hybrid contribution 0.296 -0.057 0.998 1.043 sum -15.266 8.597 -21.352 27.620 Atomic orbital electron populations 1.22939 0.79298 1.03764 1.01122 1.87953 1.21547 1.28320 1.95642 1.21429 0.88624 0.84969 1.02366 1.19813 0.95222 1.02408 0.93336 1.21444 0.94575 0.96725 0.98058 1.21467 0.94432 0.99682 0.98537 1.21380 1.01009 0.97321 0.91882 1.19502 0.93981 1.04195 0.93437 1.21915 1.00950 0.80085 0.94208 1.86614 1.69794 1.31707 1.39038 1.24514 0.73084 0.93552 0.77736 1.90624 1.47798 1.47128 1.57724 1.21529 1.04330 0.88189 0.99154 1.18799 0.93951 0.96345 0.90743 1.21641 1.36348 0.93143 1.07112 0.90521 1.26108 0.94992 1.02132 0.96980 1.70161 1.38214 1.33345 1.15838 0.85301 0.79174 0.78587 0.77079 1.19653 1.21087 1.18017 1.21096 0.93206 0.97713 0.98621 0.93258 0.92379 0.88995 0.91692 0.90114 0.83295 0.82722 0.84670 0.90126 0.90619 0.86818 0.86637 0.99064 0.99127 0.92719 0.85806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.16 10.69 -148.98 -1.59 -9.75 16 3 C 0.10 1.59 6.06 71.23 0.43 2.02 16 4 C -0.11 -2.09 5.51 -19.87 -0.11 -2.20 16 5 C -0.09 -1.47 9.70 22.27 0.22 -1.25 16 6 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 7 C -0.10 -2.02 9.70 22.27 0.22 -1.80 16 8 C -0.11 -2.72 5.52 -19.87 -0.11 -2.83 16 9 C 0.10 2.93 5.59 71.24 0.40 3.32 16 10 O -0.35 -12.26 10.20 -51.41 -0.52 -12.79 16 11 C 0.47 19.11 7.96 71.23 0.57 19.68 16 12 O -0.54 -26.01 15.73 21.96 0.35 -25.66 16 13 C -0.09 -3.96 5.75 29.85 0.17 -3.79 16 14 C 0.04 2.15 4.26 29.85 0.13 2.27 16 15 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 16 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 17 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 18 N -0.94 -58.71 13.29 21.45 0.28 -58.42 16 19 Si 0.97 44.16 29.54 68.60 2.03 46.18 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 C -0.09 -2.02 9.36 22.27 0.21 -1.81 16 24 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 0.90 8.09 -2.38 -0.02 0.88 16 28 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 29 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.08 2.24 8.08 -2.39 -0.02 2.22 16 33 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 34 H 0.11 4.28 8.14 -2.38 -0.02 4.26 16 35 H 0.12 4.31 8.14 -2.39 -0.02 4.29 16 36 H -0.01 -0.56 8.10 -2.38 -0.02 -0.58 16 37 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 38 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 39 H 0.12 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -74.32 343.32 5.85 -68.47 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.02 Total: 9.04 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 4.28 Total: -17.07 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.28 Total: -58.42 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -1.77 Total: -48.20 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -74.32 5.85 -68.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.699 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds