Wall clock time and date at job start Tue Mar 31 2020 00:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47021 * 269.99757 * 3 2 1 5 5 H 1.48509 * 109.47314 * 29.99509 * 3 2 1 6 6 H 1.48499 * 109.47460 * 149.99454 * 3 2 1 7 7 C 1.37877 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00389 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99567 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47038 * 175.27587 * 9 7 2 11 11 C 1.46897 * 110.99914 * 71.27956 * 10 9 7 12 12 C 1.50703 * 109.47217 * 190.00186 * 11 10 9 13 13 C 1.35484 * 126.08267 * 90.02286 * 12 11 10 14 14 N 1.34956 * 108.98816 * 180.02562 * 13 12 11 15 15 H 0.96994 * 125.63949 * 179.97438 * 14 13 12 16 16 C 1.37703 * 108.72526 * 359.97438 * 14 13 12 17 17 C 1.46496 * 126.25864 * 180.02562 * 16 14 13 18 18 O 1.21615 * 120.00022 * 179.97438 * 17 16 14 19 19 O 1.34894 * 120.00134 * 359.97438 * 17 16 14 20 20 C 1.37992 * 107.47753 * 359.74279 * 16 14 13 21 21 C 1.46899 * 110.99849 * 195.22852 * 10 9 7 22 22 C 1.52999 * 109.46718 * 67.52472 * 21 10 9 23 23 C 1.53007 * 117.49762 * 243.17750 * 22 21 10 24 24 C 1.53004 * 117.49826 * 174.52280 * 22 21 10 25 25 H 0.97004 * 119.99496 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47309 * 55.27395 * 9 7 2 27 27 H 1.09004 * 109.46831 * 295.27594 * 9 7 2 28 28 H 1.09000 * 109.47165 * 309.99521 * 11 10 9 29 29 H 1.09002 * 109.47633 * 70.00045 * 11 10 9 30 30 H 1.07997 * 125.50148 * 359.97438 * 13 12 11 31 31 H 0.96699 * 116.99750 * 179.97438 * 19 17 16 32 32 H 1.07995 * 126.51851 * 180.25489 * 20 16 14 33 33 H 1.08999 * 109.47106 * 187.52145 * 21 10 9 34 34 H 1.08996 * 109.47622 * 307.52703 * 21 10 9 35 35 H 1.08999 * 115.55668 * 28.85137 * 22 21 10 36 36 H 1.09001 * 117.49926 * 0.02562 * 23 22 21 37 37 H 1.08996 * 117.49651 * 145.01938 * 23 22 21 38 38 H 1.08997 * 117.49741 * 214.97862 * 24 22 21 39 39 H 1.09000 * 117.50120 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2015 -3.6134 -0.1129 11 6 2.9684 -3.7796 1.1289 12 6 4.0919 -4.7572 0.8985 13 6 5.3439 -4.4502 0.4815 14 7 6.0673 -5.5859 0.3906 15 1 6.9951 -5.6443 0.1139 16 6 5.2705 -6.6480 0.7556 17 6 5.6696 -8.0570 0.7956 18 8 4.8691 -8.9062 1.1378 19 8 6.9249 -8.4124 0.4529 20 6 4.0293 -6.1416 1.0830 21 6 1.5121 -4.8585 -0.4765 22 6 0.9657 -4.7417 -1.9008 23 6 -0.5520 -4.8071 -2.0829 24 6 0.3225 -5.9867 -2.5150 25 1 -0.4849 0.8401 -0.0004 26 1 0.5627 -2.5213 -0.8443 27 1 0.6889 -2.5942 0.9297 28 1 3.3808 -2.8175 1.4328 29 1 2.3127 -4.1580 1.9131 30 1 5.7044 -3.4572 0.2573 31 1 7.1416 -9.3539 0.4953 32 1 3.1716 -6.7075 1.4154 33 1 2.2136 -5.6911 -0.4236 34 1 0.6882 -5.0331 0.2155 35 1 1.5245 -4.0837 -2.5663 36 1 -1.1613 -4.9329 -1.1878 37 1 -0.9916 -4.1923 -2.8682 38 1 0.4579 -6.1475 -3.5846 39 1 0.2889 -6.8891 -1.9046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833760408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:15 Heat of formation + Delta-G solvation = -18.889546 kcal Electronic energy + Delta-G solvation = -21366.837322 eV Core-core repulsion = 18082.973957 eV Total energy + Delta-G solvation = -3283.863365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34915 -39.65848 -37.64741 -36.19842 -35.38833 -32.62185 -31.20819 -29.74163 -27.54384 -26.46727 -23.99129 -23.59397 -21.90424 -21.12449 -20.43741 -19.73777 -19.34930 -18.11040 -17.77114 -16.34838 -15.84499 -15.53137 -15.24474 -14.70552 -14.29369 -14.00911 -13.76616 -13.49465 -13.34573 -13.17648 -12.78750 -12.27350 -11.94738 -11.83789 -11.74218 -11.17798 -11.08514 -10.97093 -10.82279 -10.60684 -10.59606 -10.53940 -9.93686 -9.78044 -9.28123 -9.16883 -8.70542 -8.37959 -8.11560 -7.14531 -5.97495 -3.98262 1.23077 2.76493 2.82685 3.18008 3.26762 3.33603 3.39972 3.42041 4.31728 4.46197 5.00128 5.10471 5.27285 5.32876 5.37942 5.39361 5.44970 5.55177 5.74415 5.97910 5.99601 6.07983 6.15989 6.20600 6.27996 6.34512 6.38450 6.45792 6.55219 6.59436 6.85964 6.89327 7.08278 7.39669 7.44643 7.45954 7.77019 7.86404 8.19431 8.31839 8.62855 9.09202 9.65257 11.13137 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.004806 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.719647 B = 5825.255191 C = 7155.639751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.191 3.809 10 N -0.528 5.528 11 C 0.129 3.871 12 C -0.157 4.157 13 C 0.061 3.939 14 N -0.530 5.530 15 H 0.420 0.580 16 C -0.066 4.066 17 C 0.555 3.445 18 O -0.513 6.513 19 O -0.525 6.525 20 C -0.081 4.081 21 C 0.084 3.916 22 C -0.126 4.126 23 C -0.179 4.179 24 C -0.191 4.191 25 H 0.260 0.740 26 H 0.041 0.959 27 H -0.014 1.014 28 H 0.091 0.909 29 H 0.028 0.972 30 H 0.177 0.823 31 H 0.414 0.586 32 H 0.146 0.854 33 H 0.069 0.931 34 H 0.020 0.980 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.862 -13.012 -0.369 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.542 4.542 8 H 0.080 0.920 9 C 0.066 3.934 10 N -0.253 5.253 11 C 0.000 4.000 12 C -0.163 4.163 13 C -0.077 4.077 14 N -0.125 5.125 15 H 0.258 0.742 16 C -0.176 4.176 17 C 0.401 3.599 18 O -0.402 6.402 19 O -0.337 6.337 20 C -0.109 4.109 21 C -0.044 4.044 22 C -0.145 4.145 23 C -0.216 4.216 24 C -0.228 4.228 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.003 0.997 28 H 0.109 0.891 29 H 0.047 0.953 30 H 0.195 0.805 31 H 0.272 0.728 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.869 -12.643 -0.697 16.688 hybrid contribution 0.330 0.128 0.417 0.547 sum 11.199 -12.515 -0.280 16.797 Atomic orbital electron populations 1.69961 1.06008 1.26568 1.51230 1.24967 0.94803 0.99118 0.95684 0.86565 0.79707 0.83478 0.77991 1.20799 1.21460 1.19939 1.21171 0.93388 0.90029 1.49612 0.92008 1.19773 0.90345 0.87146 0.96097 1.62122 1.27686 1.04034 1.31410 1.20345 0.91573 0.96884 0.91164 1.19660 0.95506 0.93681 1.07493 1.21973 0.92295 0.90677 1.02755 1.41775 1.13030 1.05931 1.51811 0.74238 1.19055 0.93719 0.84586 1.20204 1.19576 0.79154 0.87863 0.73278 1.90945 1.52506 1.51111 1.45664 1.84581 1.32440 1.34809 1.81914 1.21316 0.94703 0.94240 1.00623 1.21630 0.96087 0.93870 0.92832 1.22242 0.94614 0.99348 0.98284 1.22971 0.94341 1.01277 1.03035 1.22941 1.06444 0.93008 1.00442 0.93053 0.94073 0.99659 0.89110 0.95344 0.80541 0.72787 0.83660 0.91308 0.96142 0.87212 0.89287 0.89257 0.89512 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.50 -13.60 8.52 -34.44 -0.29 -13.89 16 8 H 0.06 1.63 7.37 -52.49 -0.39 1.24 16 9 C 0.19 4.83 4.60 -4.97 -0.02 4.80 16 10 N -0.53 -10.95 4.44 -237.52 -1.05 -12.01 16 11 C 0.13 2.37 5.29 -4.98 -0.03 2.35 16 12 C -0.16 -2.44 4.98 -105.02 -0.52 -2.96 16 13 C 0.06 0.79 11.78 -17.16 -0.20 0.59 16 14 N -0.53 -5.91 6.07 -9.53 -0.06 -5.97 16 15 H 0.42 3.38 8.96 -40.82 -0.37 3.01 16 16 C -0.07 -0.88 7.10 -81.99 -0.58 -1.46 16 17 C 0.56 7.00 8.30 34.06 0.28 7.29 16 18 O -0.51 -7.92 17.67 -19.35 -0.34 -8.26 16 19 O -0.52 -4.58 13.44 -41.02 -0.55 -5.13 16 20 C -0.08 -1.21 9.01 -39.09 -0.35 -1.56 16 21 C 0.08 1.56 5.10 -3.82 -0.02 1.54 16 22 C -0.13 -2.25 4.73 -90.61 -0.43 -2.68 16 23 C -0.18 -2.98 10.05 -26.69 -0.27 -3.25 16 24 C -0.19 -2.82 10.25 -26.69 -0.27 -3.10 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.04 1.12 6.87 -51.93 -0.36 0.76 16 27 H -0.01 -0.39 8.06 -51.93 -0.42 -0.81 16 28 H 0.09 1.77 6.96 -51.93 -0.36 1.40 16 29 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 30 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.41 1.72 9.11 45.56 0.42 2.14 16 32 H 0.15 2.14 8.05 -52.49 -0.42 1.72 16 33 H 0.07 1.20 5.75 -51.93 -0.30 0.90 16 34 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 35 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 36 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -32.27 335.02 -8.74 -41.01 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.69 Total: 5.64 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.81 Total: -10.90 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.38 Total: -43.53 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.89 Total: -13.39 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.27 -8.74 -41.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.117 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds