Wall clock time and date at job start Tue Mar 31 2020 00:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47021 * 269.99757 * 3 2 1 5 5 H 1.48509 * 109.47314 * 29.99509 * 3 2 1 6 6 H 1.48499 * 109.47460 * 149.99454 * 3 2 1 7 7 C 1.37877 * 120.00290 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00389 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99567 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47038 * 175.27587 * 9 7 2 11 11 C 1.46897 * 110.99914 * 71.27956 * 10 9 7 12 12 C 1.50703 * 109.47217 * 190.00186 * 11 10 9 13 13 C 1.35484 * 126.08267 * 90.02286 * 12 11 10 14 14 N 1.34956 * 108.98816 * 180.02562 * 13 12 11 15 15 H 0.96994 * 125.63949 * 179.97438 * 14 13 12 16 16 C 1.37703 * 108.72526 * 359.97438 * 14 13 12 17 17 C 1.46496 * 126.25864 * 180.02562 * 16 14 13 18 18 O 1.21615 * 120.00022 * 179.97438 * 17 16 14 19 19 O 1.34894 * 120.00134 * 359.97438 * 17 16 14 20 20 C 1.37992 * 107.47753 * 359.74279 * 16 14 13 21 21 C 1.46899 * 110.99849 * 195.22852 * 10 9 7 22 22 C 1.52999 * 109.46718 * 67.52472 * 21 10 9 23 23 C 1.53007 * 117.49762 * 243.17750 * 22 21 10 24 24 C 1.53004 * 117.49826 * 174.52280 * 22 21 10 25 25 H 0.97004 * 119.99496 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47309 * 55.27395 * 9 7 2 27 27 H 1.09004 * 109.46831 * 295.27594 * 9 7 2 28 28 H 1.09000 * 109.47165 * 309.99521 * 11 10 9 29 29 H 1.09002 * 109.47633 * 70.00045 * 11 10 9 30 30 H 1.07997 * 125.50148 * 359.97438 * 13 12 11 31 31 H 0.96699 * 116.99750 * 179.97438 * 19 17 16 32 32 H 1.07995 * 126.51851 * 180.25489 * 20 16 14 33 33 H 1.08999 * 109.47106 * 187.52145 * 21 10 9 34 34 H 1.08996 * 109.47622 * 307.52703 * 21 10 9 35 35 H 1.08999 * 115.55668 * 28.85137 * 22 21 10 36 36 H 1.09001 * 117.49926 * 0.02562 * 23 22 21 37 37 H 1.08996 * 117.49651 * 145.01938 * 23 22 21 38 38 H 1.08997 * 117.49741 * 214.97862 * 24 22 21 39 39 H 1.09000 * 117.50120 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2015 -3.6134 -0.1129 11 6 2.9684 -3.7796 1.1289 12 6 4.0919 -4.7572 0.8985 13 6 5.3439 -4.4502 0.4815 14 7 6.0673 -5.5859 0.3906 15 1 6.9951 -5.6443 0.1139 16 6 5.2705 -6.6480 0.7556 17 6 5.6696 -8.0570 0.7956 18 8 4.8691 -8.9062 1.1378 19 8 6.9249 -8.4124 0.4529 20 6 4.0293 -6.1416 1.0830 21 6 1.5121 -4.8585 -0.4765 22 6 0.9657 -4.7417 -1.9008 23 6 -0.5520 -4.8071 -2.0829 24 6 0.3225 -5.9867 -2.5150 25 1 -0.4849 0.8401 -0.0004 26 1 0.5627 -2.5213 -0.8443 27 1 0.6889 -2.5942 0.9297 28 1 3.3808 -2.8175 1.4328 29 1 2.3127 -4.1580 1.9131 30 1 5.7044 -3.4572 0.2573 31 1 7.1416 -9.3539 0.4953 32 1 3.1716 -6.7075 1.4154 33 1 2.2136 -5.6911 -0.4236 34 1 0.6882 -5.0331 0.2155 35 1 1.5245 -4.0837 -2.5663 36 1 -1.1613 -4.9329 -1.1878 37 1 -0.9916 -4.1923 -2.8682 38 1 0.4579 -6.1475 -3.5846 39 1 0.2889 -6.8891 -1.9046 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833760408.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:14 Heat of formation + Delta-G solvation = -40.915675 kcal Electronic energy + Delta-G solvation = -21367.792446 eV Core-core repulsion = 18082.973957 eV Total energy + Delta-G solvation = -3284.818489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.01 seconds Orbital eigenvalues (eV) -42.40170 -40.62609 -39.13957 -37.08995 -36.90125 -34.63000 -32.51450 -30.82983 -29.43355 -27.90451 -25.61173 -24.80671 -23.18062 -22.82857 -21.53848 -20.90002 -20.67703 -19.23693 -18.69162 -18.41610 -16.96094 -16.78977 -16.48270 -16.33763 -15.86259 -15.46741 -15.08042 -14.71412 -14.54171 -14.30396 -14.25156 -13.95455 -13.57038 -13.29709 -12.96420 -12.63443 -12.61820 -12.47704 -12.35534 -12.26090 -12.12654 -11.88545 -11.74801 -11.32270 -11.05511 -10.68833 -10.48813 -9.84409 -9.23786 -8.88067 -8.10165 -6.19083 0.21354 1.46817 1.47971 1.58337 1.65769 1.92047 2.10348 2.37522 2.47589 2.97915 3.22387 3.49830 3.98717 4.08651 4.11717 4.19879 4.24366 4.33399 4.46053 4.60530 4.69649 4.77551 4.79738 4.90774 4.99348 5.00346 5.05361 5.18293 5.27782 5.32610 5.39919 5.48575 5.53270 5.70766 5.77439 5.94888 6.18344 6.50792 6.56909 6.75267 6.95268 6.97627 7.49920 9.00750 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.004806 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.719647 B = 5825.255191 C = 7155.639751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.069 0.931 9 C 0.209 3.791 10 N -0.528 5.528 11 C 0.134 3.866 12 C -0.182 4.182 13 C 0.076 3.924 14 N -0.507 5.507 15 H 0.439 0.561 16 C -0.067 4.067 17 C 0.565 3.435 18 O -0.546 6.546 19 O -0.508 6.508 20 C -0.098 4.098 21 C 0.091 3.909 22 C -0.151 4.151 23 C -0.191 4.191 24 C -0.155 4.155 25 H 0.261 0.739 26 H 0.015 0.985 27 H -0.049 1.049 28 H 0.077 0.923 29 H 0.018 0.982 30 H 0.199 0.801 31 H 0.436 0.564 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.009 0.991 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.530 -13.684 -1.159 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.083 3.917 10 N -0.252 5.252 11 C 0.006 3.994 12 C -0.188 4.188 13 C -0.064 4.064 14 N -0.103 5.103 15 H 0.280 0.720 16 C -0.177 4.177 17 C 0.411 3.589 18 O -0.438 6.438 19 O -0.323 6.323 20 C -0.126 4.126 21 C -0.038 4.038 22 C -0.170 4.170 23 C -0.228 4.228 24 C -0.192 4.192 25 H 0.070 0.930 26 H 0.033 0.967 27 H -0.031 1.031 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.216 0.784 31 H 0.299 0.701 32 H 0.156 0.844 33 H 0.102 0.898 34 H 0.027 0.973 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.127 0.873 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.609 -13.361 -1.498 19.130 hybrid contribution -0.445 0.251 0.665 0.839 sum 13.164 -13.109 -0.833 18.596 Atomic orbital electron populations 1.70109 1.07811 1.27522 1.52376 1.25880 0.95614 1.03029 0.95201 0.85439 0.78765 0.78530 0.78193 1.20219 1.21465 1.18290 1.21508 0.93816 0.90826 1.49044 0.91318 1.19392 0.90377 0.88818 0.93150 1.62095 1.26561 1.03912 1.32637 1.20205 0.92151 0.97178 0.89849 1.19332 0.95730 0.93394 1.10357 1.22161 0.91391 0.91842 1.00982 1.41690 1.13608 1.04755 1.50261 0.72018 1.19080 0.93448 0.85563 1.19624 1.19373 0.79798 0.87133 0.72557 1.90943 1.53764 1.51851 1.47202 1.84522 1.29984 1.36999 1.80806 1.21277 0.95585 0.94044 1.01649 1.21619 0.95864 0.93167 0.93106 1.22172 0.95153 1.01911 0.97737 1.22995 0.93646 1.03076 1.03079 1.23020 1.02463 0.92005 1.01706 0.93044 0.96699 1.03098 0.90440 0.96390 0.78423 0.70139 0.84422 0.89825 0.97296 0.88953 0.89947 0.89237 0.87330 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.39 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.01 5.46 84.66 0.46 0.47 16 3 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 4 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.51 -28.31 8.52 25.60 0.22 -28.09 16 8 H 0.07 3.61 7.37 -2.91 -0.02 3.59 16 9 C 0.21 11.05 4.60 85.56 0.39 11.44 16 10 N -0.53 -22.59 4.44 -905.37 -4.02 -26.61 16 11 C 0.13 5.08 5.29 85.56 0.45 5.54 16 12 C -0.18 -5.54 4.98 -20.12 -0.10 -5.64 16 13 C 0.08 1.80 11.78 83.58 0.98 2.79 16 14 N -0.51 -9.80 6.07 -184.05 -1.12 -10.91 16 15 H 0.44 5.34 8.96 -92.71 -0.83 4.51 16 16 C -0.07 -1.64 7.10 40.32 0.29 -1.35 16 17 C 0.56 12.94 8.30 69.97 0.58 13.52 16 18 O -0.55 -16.09 17.67 19.46 0.34 -15.75 16 19 O -0.51 -7.10 13.44 -58.09 -0.78 -7.88 16 20 C -0.10 -2.86 9.01 22.59 0.20 -2.66 16 21 C 0.09 3.44 5.10 86.30 0.44 3.88 16 22 C -0.15 -5.44 4.73 -10.79 -0.05 -5.50 16 23 C -0.19 -6.44 10.05 30.62 0.31 -6.13 16 24 C -0.15 -4.33 10.25 30.62 0.31 -4.02 16 25 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.01 0.86 6.87 -2.39 -0.02 0.84 16 27 H -0.05 -2.84 8.06 -2.38 -0.02 -2.86 16 28 H 0.08 3.09 6.96 -2.39 -0.02 3.07 16 29 H 0.02 0.70 8.12 -2.39 -0.02 0.68 16 30 H 0.20 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.44 2.05 9.11 -74.06 -0.67 1.38 16 32 H 0.14 4.12 8.05 -2.91 -0.02 4.10 16 33 H 0.08 2.91 5.75 -2.39 -0.01 2.90 16 34 H 0.01 0.35 7.84 -2.39 -0.02 0.34 16 35 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.08 2.85 8.03 -2.39 -0.02 2.83 16 37 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 38 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -71.22 335.02 0.81 -70.42 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -0.42 Total: 17.13 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.49 Total: -15.75 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -4.85 Total: -93.64 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.44 Total: -23.62 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.22 0.81 -70.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833760408.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.500 kcal (2) G-P(sol) polarization free energy of solvation -71.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.01 seconds