Wall clock time and date at job start Mon Mar 30 2020 23:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99453 * 2 1 4 4 H 1.08996 * 109.47209 * 30.00342 * 3 2 1 5 5 C 1.52997 * 109.46910 * 149.99985 * 3 2 1 6 6 C 1.50706 * 109.47198 * 294.99643 * 5 3 2 7 7 C 1.38238 * 119.99775 * 90.00136 * 6 5 3 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38233 * 120.00212 * 270.02182 * 6 5 3 12 12 C 1.50694 * 109.47096 * 269.99804 * 3 2 1 13 13 O 1.20835 * 120.00212 * 355.00197 * 12 3 2 14 14 O 1.34224 * 120.00199 * 175.00321 * 12 3 2 15 15 C 1.45205 * 117.00458 * 179.97438 * 14 12 3 16 16 H 1.08998 * 109.46669 * 330.00232 * 15 14 12 17 17 C 1.53001 * 109.46929 * 89.99813 * 15 14 12 18 18 C 1.50700 * 109.47326 * 209.99873 * 15 14 12 19 19 H 1.07997 * 120.00153 * 0.02562 * 18 15 14 20 20 C 1.37876 * 119.99740 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99952 * 180.02562 * 20 18 15 22 22 Si 1.86805 * 120.00063 * 0.02562 * 20 18 15 23 23 H 1.48504 * 109.47037 * 90.00206 * 22 20 18 24 24 H 1.48499 * 109.46901 * 210.00122 * 22 20 18 25 25 H 1.48495 * 109.47257 * 330.00012 * 22 20 18 26 26 H 1.08997 * 109.47344 * 299.99492 * 1 2 3 27 27 H 1.09003 * 109.47231 * 60.00568 * 1 2 3 28 28 H 1.09006 * 109.46477 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47286 * 174.99993 * 5 3 2 30 30 H 1.09002 * 109.47284 * 54.99416 * 5 3 2 31 31 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 35 35 H 1.07999 * 119.99956 * 0.02562 * 11 6 5 36 36 H 1.08999 * 109.47453 * 179.97438 * 17 15 14 37 37 H 1.09001 * 109.47330 * 300.00769 * 17 15 14 38 38 H 1.09002 * 109.46865 * 60.00235 * 17 15 14 39 39 H 0.97002 * 120.00266 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 3.3588 1.2634 0.7212 6 6 3.1415 0.9238 2.1734 7 6 3.1431 -0.3968 2.5820 8 6 2.9443 -0.7083 3.9141 9 6 2.7446 0.3007 4.8375 10 6 2.7377 1.6210 4.4280 11 6 2.9402 1.9327 3.0966 12 6 2.2145 1.7644 -1.4208 13 8 1.9800 1.0134 -2.3379 14 8 2.6569 3.0074 -1.6676 15 6 2.8311 3.3809 -3.0599 16 1 3.0846 2.4964 -3.6443 17 6 1.5312 3.9881 -3.5914 18 6 3.9416 4.3933 -3.1733 19 1 4.4645 4.7227 -2.2876 20 6 4.2900 4.8989 -4.4078 21 7 5.2595 5.7820 -4.5068 22 14 3.3850 4.3296 -5.9396 23 1 2.2179 5.2150 -6.1828 24 1 4.3019 4.3874 -7.1063 25 1 2.9160 2.9339 -5.7474 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3632 -1.0278 -0.0005 29 1 3.8426 2.2372 0.6444 30 1 3.9930 0.5052 0.2618 31 1 3.2997 -1.1852 1.8606 32 1 2.9452 -1.7400 4.2333 33 1 2.5897 0.0573 5.8783 34 1 2.5772 2.4092 5.1488 35 1 2.9382 2.9644 2.7772 36 1 1.6620 4.2689 -4.6365 37 1 0.7279 3.2559 -3.5093 38 1 1.2777 4.8725 -3.0069 39 1 5.5044 6.1381 -5.3753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835161664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:55 Heat of formation + Delta-G solvation = -106.365219 kcal Electronic energy + Delta-G solvation = -21600.171445 eV Core-core repulsion = 18280.222099 eV Total energy + Delta-G solvation = -3319.949346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.18590 -39.19798 -37.71343 -35.73107 -33.63251 -33.10396 -30.92249 -30.75945 -29.39637 -26.43294 -25.37471 -24.83305 -22.58938 -21.84939 -21.03820 -19.82880 -17.62985 -17.02165 -16.87657 -16.37185 -16.09066 -15.41868 -15.08040 -14.97134 -14.82509 -14.55631 -13.85159 -13.43790 -13.17385 -13.05379 -12.81865 -12.58270 -12.34985 -12.27482 -11.97875 -11.70670 -11.57021 -11.20881 -11.09759 -10.92977 -10.91661 -10.54303 -10.25165 -9.85113 -9.78513 -9.33931 -9.15609 -8.95104 -8.72655 -8.71256 -6.25222 -4.27782 1.27689 1.37127 2.71601 3.16327 3.19425 3.29277 3.31582 3.75098 3.80651 4.24301 4.70136 4.82997 4.93189 4.99224 5.03936 5.06484 5.10536 5.28270 5.37052 5.39300 5.45322 5.50584 5.64250 5.68742 5.87223 6.03385 6.07868 6.11315 6.23219 6.35181 6.41753 6.45867 6.55269 6.61449 6.94475 6.97596 6.99070 7.32346 7.47643 8.19366 8.55290 8.81228 9.31825 10.86784 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026530 B = 0.004207 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.158659 B = 6654.512173 C = 7301.007020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.108 3.892 4 H 0.096 0.904 5 C -0.076 4.076 6 C -0.076 4.076 7 C -0.099 4.099 8 C -0.124 4.124 9 C -0.126 4.126 10 C -0.123 4.123 11 C -0.115 4.115 12 C 0.427 3.573 13 O -0.506 6.506 14 O -0.340 6.340 15 C 0.190 3.810 16 H 0.046 0.954 17 C -0.170 4.170 18 C -0.525 4.525 19 H 0.088 0.912 20 C 0.080 3.920 21 N -0.887 5.887 22 Si 0.878 3.122 23 H -0.273 1.273 24 H -0.289 1.289 25 H -0.263 1.263 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.884 -10.084 15.938 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.048 3.952 4 H 0.113 0.887 5 C -0.113 4.113 6 C -0.076 4.076 7 C -0.117 4.117 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.141 4.141 11 C -0.133 4.133 12 C 0.269 3.731 13 O -0.395 6.395 14 O -0.256 6.256 15 C 0.136 3.864 16 H 0.064 0.936 17 C -0.227 4.227 18 C -0.563 4.563 19 H 0.106 0.894 20 C -0.123 4.123 21 N -0.524 5.524 22 Si 0.707 3.293 23 H -0.200 1.200 24 H -0.216 1.216 25 H -0.187 1.187 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.075 0.925 37 H 0.054 0.946 38 H 0.083 0.917 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.712 -10.319 15.494 20.150 hybrid contribution -0.748 0.020 -1.113 1.341 sum -8.460 -10.299 14.381 19.608 Atomic orbital electron populations 1.22865 0.80707 1.03099 1.00091 1.87988 1.20063 1.24881 1.94141 1.21590 0.97347 0.86513 0.89743 0.88673 1.20692 0.94463 1.05144 0.91005 1.19730 0.99644 0.93541 0.94666 1.21118 0.98712 0.96056 0.95766 1.21134 1.00581 0.99134 0.93391 1.21126 1.00826 0.93123 0.99353 1.21114 1.00618 0.96458 0.95908 1.21172 0.99726 0.99335 0.93095 1.24221 0.74707 0.81599 0.92597 1.90610 1.46988 1.55261 1.46611 1.86506 1.75019 1.29431 1.34636 1.20938 0.94359 0.96340 0.74730 0.93648 1.22526 0.98197 1.00948 1.01032 1.20768 1.16093 1.23417 0.95981 0.89412 1.24723 0.94862 0.94362 0.98348 1.69833 1.28597 1.28788 1.25210 0.86984 0.79202 0.80234 0.82841 1.19998 1.21618 1.18749 0.93868 0.93668 0.89254 0.87501 0.89273 0.85755 0.86311 0.86464 0.86195 0.85634 0.92480 0.94568 0.91739 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.81 101.05 1.09 1.43 16 2 O -0.35 -5.24 9.38 -55.14 -0.52 -5.76 16 3 C 0.11 1.63 2.61 -27.89 -0.07 1.55 16 4 H 0.10 1.24 7.79 -51.93 -0.40 0.84 16 5 C -0.08 -1.03 5.04 -27.88 -0.14 -1.17 16 6 C -0.08 -0.91 4.97 -104.62 -0.52 -1.43 16 7 C -0.10 -1.12 9.40 -39.58 -0.37 -1.50 16 8 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 9 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 10 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 12 C 0.43 8.53 7.22 36.00 0.26 8.79 16 13 O -0.51 -11.55 15.73 -25.47 -0.40 -11.95 16 14 O -0.34 -7.60 9.83 -39.24 -0.39 -7.98 16 15 C 0.19 4.78 2.15 -27.88 -0.06 4.72 16 16 H 0.05 1.22 6.22 -51.93 -0.32 0.89 16 17 C -0.17 -3.86 9.03 37.16 0.34 -3.52 16 18 C -0.52 -14.89 9.48 -34.44 -0.33 -15.22 16 19 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 20 C 0.08 2.29 5.45 -17.82 -0.10 2.20 16 21 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 22 Si 0.88 21.61 24.37 -169.99 -4.14 17.47 16 23 H -0.27 -6.44 6.87 56.52 0.39 -6.05 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.26 -6.41 6.53 56.52 0.37 -6.04 16 26 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.45 8.06 -51.93 -0.42 1.04 16 30 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -32.32 330.49 -6.73 -39.06 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.56 Total: 0.54 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.48 Total: -10.64 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -1.30 Total: -25.70 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.47 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.32 -6.73 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835161664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.306 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds